RNA–Protein interactions for RNA: ENST00000555905.5

TMEM260-208, Transcript of transmembrane protein 260, humanhuman

TSL 5

Gene TMEM260, Length 766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-208ENST00000555905 CHURC1Q8WUH1 139 aa12.78□□□□□ -0.36
TMEM260-208ENST00000555905 RRP36Q96EU6 259 aaKnown RBP12.78□□□□□ -0.36
TMEM260-208ENST00000555905 C12orf42Q96LP6 360 aa12.78□□□□□ -0.36
TMEM260-208ENST00000555905 EMILIN3Q9NT22 766 aa12.78□□□□□ -0.36
TMEM260-208ENST00000555905 SEC63Q9UGP8 760 aaKnown RBP12.78□□□□□ -0.36
TMEM260-208ENST00000555905 V9GY48 417 aaPredicted RBP12.78□□□□□ -0.36
TMEM260-208ENST00000555905 CNTNAP5Q8WYK1 1306 aa12.78□□□□□ -0.36
TMEM260-208ENST00000555905 PTPRFP10586 1907 aa12.78□□□□□ -0.36
TMEM260-208ENST00000555905 IRF6O14896 467 aa12.77□□□□□ -0.37
TMEM260-208ENST00000555905 PLA2G6O60733 806 aa12.77□□□□□ -0.37
TMEM260-208ENST00000555905 DTNBO60941 627 aa12.77□□□□□ -0.37
TMEM260-208ENST00000555905 PDIA4P13667 645 aaKnown RBP12.77□□□□□ -0.37
TMEM260-208ENST00000555905 FDPSP14324 419 aaKnown RBP12.77□□□□□ -0.37
TMEM260-208ENST00000555905 VCAM1P19320 739 aa12.77□□□□□ -0.37
TMEM260-208ENST00000555905 SLC16A2P36021 539 aa12.77□□□□□ -0.37
TMEM260-208ENST00000555905 VASPP50552 380 aaPredicted RBP12.77□□□□□ -0.37
TMEM260-208ENST00000555905 SH3D19Q5HYK7 790 aa12.77□□□□□ -0.37
TMEM260-208ENST00000555905 SYDE2Q5VT97 1194 aa12.77□□□□□ -0.37
TMEM260-208ENST00000555905 LARP1BQ659C4 914 aaKnown RBP12.77□□□□□ -0.37
TMEM260-208ENST00000555905 TTBK2Q6IQ55 1244 aa12.77□□□□□ -0.37
TMEM260-208ENST00000555905 FAM160B2Q86V87 743 aa12.77□□□□□ -0.37
TMEM260-208ENST00000555905 WNK4Q96J92 1243 aa12.77□□□□□ -0.37
TMEM260-208ENST00000555905 TANGO6Q9C0B7 1094 aa12.77□□□□□ -0.37
TMEM260-208ENST00000555905 UBA5Q9GZZ9 404 aa12.77□□□□□ -0.37
TMEM260-208ENST00000555905 RIOX1Q9H6W3 641 aa12.77□□□□□ -0.37
TMEM260-208ENST00000555905 VAT1LQ9HCJ6 419 aa12.77□□□□□ -0.37
TMEM260-208ENST00000555905 FEM1BQ9UK73 627 aa12.77□□□□□ -0.37
TMEM260-208ENST00000555905 KCNH4Q9UQ05 1017 aa12.77□□□□□ -0.37
TMEM260-208ENST00000555905 BAZ2BQ9UIF8 2168 aaKnown RBP12.76□□□□□ -0.37
TMEM260-208ENST00000555905 A0A0G2JLL6 359 aaPredicted RBP12.76□□□□□ -0.37
TMEM260-208ENST00000555905 SNAPC2Q13487 334 aa12.76□□□□□ -0.37
TMEM260-208ENST00000555905 TRIM29Q14134 588 aa12.76□□□□□ -0.37
TMEM260-208ENST00000555905 BTNL9Q6UXG8 535 aa12.76□□□□□ -0.37
TMEM260-208ENST00000555905 FASTKD5Q7L8L6 764 aaKnown RBP12.76□□□□□ -0.37
TMEM260-208ENST00000555905 PRRT2Q7Z6L0 340 aaPredicted RBP12.76□□□□□ -0.37
TMEM260-208ENST00000555905 ADGRF4Q8IZF3 695 aa12.76□□□□□ -0.37
TMEM260-208ENST00000555905 PROCA1Q8NCQ7 364 aaPredicted RBP12.76□□□□□ -0.37
TMEM260-208ENST00000555905 PIBF1Q8WXW3 757 aa12.76□□□□□ -0.37
TMEM260-208ENST00000555905 ALG1Q9BT22 464 aa12.76□□□□□ -0.37
TMEM260-208ENST00000555905 CPVLQ9H3G5 476 aa12.76□□□□□ -0.37
TMEM260-208ENST00000555905 RPAP3Q9H6T3 665 aaPredicted RBP12.76□□□□□ -0.37
TMEM260-208ENST00000555905 CIZ1Q9ULV3 898 aaPredicted RBP12.76□□□□□ -0.37
TMEM260-208ENST00000555905 LOC285556D6RIA3 1793 aa12.76□□□□□ -0.37
TMEM260-208ENST00000555905 hCG_1642624A0A1W2PR95 340 aa12.75□□□□□ -0.37
TMEM260-208ENST00000555905 TMEM88BA6NKF7 163 aa12.75□□□□□ -0.37
TMEM260-208ENST00000555905 H3BQV1 296 aa12.75□□□□□ -0.37
TMEM260-208ENST00000555905 CYTH3O43739 400 aa12.75□□□□□ -0.37
TMEM260-208ENST00000555905 FLOT1O75955 427 aa12.75□□□□□ -0.37
TMEM260-208ENST00000555905 SCG2P13521 617 aa12.75□□□□□ -0.37
TMEM260-208ENST00000555905 XBP1P17861 261 aa12.75□□□□□ -0.37
TMEM260-208ENST00000555905 DDIT3P35638 169 aa12.75□□□□□ -0.37
TMEM260-208ENST00000555905 GTF2A2P52657 109 aa12.75□□□□□ -0.37
TMEM260-208ENST00000555905 NUCB2P80303 420 aa12.75□□□□□ -0.37
TMEM260-208ENST00000555905 DGKZQ13574 1117 aa12.75□□□□□ -0.37
TMEM260-208ENST00000555905 PFKFB3Q16875 520 aaPredicted RBP12.75□□□□□ -0.37
TMEM260-208ENST00000555905 IFFO2Q5TF58 517 aa12.75□□□□□ -0.37
TMEM260-208ENST00000555905 GADL1Q6ZQY3 521 aa12.75□□□□□ -0.37
TMEM260-208ENST00000555905 SAPCD2Q86UD0 394 aa12.75□□□□□ -0.37
TMEM260-208ENST00000555905 HOMER1Q86YM7 354 aa12.75□□□□□ -0.37
TMEM260-208ENST00000555905 C8orf76Q96K31 380 aa12.75□□□□□ -0.37
TMEM260-208ENST00000555905 SLF1Q9BQI6 1058 aa12.75□□□□□ -0.37
TMEM260-208ENST00000555905 JMJD4Q9H9V9 463 aa12.75□□□□□ -0.37
TMEM260-208ENST00000555905 CHMP5Q9NZZ3 219 aa12.75□□□□□ -0.37
TMEM260-208ENST00000555905 PNMA6FA0A0J9YX94 578 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 USP17L15C9J2P7 530 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 USP17L13C9JLJ4 530 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 USP17L11C9JVI0 530 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 USP17L18D6R9N7 530 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 USP17L22D6RA61 530 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 USP17L17D6RBQ6 530 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 USP17L19D6RCP7 530 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 USP17L20D6RJB6 530 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 ZBTB5O15062 677 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 STX6O43752 255 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 ZBTB48P10074 688 aaPredicted RBP12.74□□□□□ -0.37
TMEM260-208ENST00000555905 CETPP11597 493 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 SYT1P21579 422 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 GJA5P36382 358 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 ZNF157P51786 506 aaPredicted RBP12.74□□□□□ -0.37
TMEM260-208ENST00000555905 FOSBP53539 338 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 USP17L24Q0WX57 530 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 SLC35G1Q2M3R5 365 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 SPRYD7Q5W111 196 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 HEATR3Q7Z4Q2 680 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 PRPF38AQ8NAV1 312 aaKnown RBP12.74□□□□□ -0.37
TMEM260-208ENST00000555905 KIFC2Q96AC6 838 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 PIGSQ96S52 555 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 PRR12Q9ULL5 1215 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 ABT1Q9ULW3 272 aaKnown RBP12.74□□□□□ -0.37
TMEM260-208ENST00000555905 TLL2Q9Y6L7 1015 aa12.74□□□□□ -0.37
TMEM260-208ENST00000555905 WDR33Q9C0J8 1336 aaKnown RBP12.73□□□□□ -0.37
TMEM260-208ENST00000555905 VPS37CA5D8V6 355 aaPredicted RBP12.73□□□□□ -0.37
TMEM260-208ENST00000555905 hCG_1984214I3L0E3 225 aa12.73□□□□□ -0.37
TMEM260-208ENST00000555905 CD44P16070 742 aaKnown RBP12.73□□□□□ -0.37
TMEM260-208ENST00000555905 TRAF1Q13077 416 aa12.73□□□□□ -0.37
TMEM260-208ENST00000555905 PABPC4Q13310 644 aaKnown RBP eCLIP12.73□□□□□ -0.37
TMEM260-208ENST00000555905 PKN1Q16512 942 aa12.73□□□□□ -0.37
TMEM260-208ENST00000555905 CDC37Q16543 378 aaPredicted RBP12.73□□□□□ -0.37
TMEM260-208ENST00000555905 RGMBQ6NW40 437 aa12.73□□□□□ -0.37
TMEM260-208ENST00000555905 CATSPERGQ6ZRH7 1159 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms