RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 FAM184AQ8NB25 1140 aa12.49□□□□□ -0.41
TDP1-211ENST00000555178 DCAF4Q8WV16 495 aa12.49□□□□□ -0.41
TDP1-211ENST00000555178 PIGSQ96S52 555 aa12.49□□□□□ -0.41
TDP1-211ENST00000555178 JMJD4Q9H9V9 463 aa12.49□□□□□ -0.41
TDP1-211ENST00000555178 AS3MTQ9HBK9 375 aa12.49□□□□□ -0.41
TDP1-211ENST00000555178 GOPCQ9HD26 462 aa12.49□□□□□ -0.41
TDP1-211ENST00000555178 VPS37CA5D8V6 355 aaPredicted RBP12.49□□□□□ -0.41
TDP1-211ENST00000555178 FMNL1O95466 1100 aaPredicted RBP12.49□□□□□ -0.41
TDP1-211ENST00000555178 LARP1BQ659C4 914 aaKnown RBP12.49□□□□□ -0.41
TDP1-211ENST00000555178 TYW1BQ6NUM6 668 aa12.49□□□□□ -0.41
TDP1-211ENST00000555178 BRI3BPQ8WY22 251 aa12.49□□□□□ -0.41
TDP1-211ENST00000555178 RBM28Q9NW13 759 aaKnown RBP12.49□□□□□ -0.41
TDP1-211ENST00000555178 CCDC196A0A1B0GTZ2 297 aa12.48□□□□□ -0.41
TDP1-211ENST00000555178 STX6O43752 255 aa12.48□□□□□ -0.41
TDP1-211ENST00000555178 HMGN5P82970 282 aaKnown RBP12.48□□□□□ -0.41
TDP1-211ENST00000555178 ASPRV1Q53RT3 343 aa12.48□□□□□ -0.41
TDP1-211ENST00000555178 RGMBQ6NW40 437 aa12.48□□□□□ -0.41
TDP1-211ENST00000555178 HOMER1Q86YM7 354 aa12.48□□□□□ -0.41
TDP1-211ENST00000555178 GPKOWQ92917 476 aaPredicted RBP eCLIP12.48□□□□□ -0.412e-6■■■□□ 15.9
TDP1-211ENST00000555178 KIFC2Q96AC6 838 aa12.48□□□□□ -0.41
TDP1-211ENST00000555178 C12orf42Q96LP6 360 aa12.48□□□□□ -0.41
TDP1-211ENST00000555178 MAP3K14Q99558 947 aa12.48□□□□□ -0.41
TDP1-211ENST00000555178 TANGO6Q9C0B7 1094 aa12.48□□□□□ -0.41
TDP1-211ENST00000555178 R3HDMLQ9H3Y0 253 aa12.48□□□□□ -0.41
TDP1-211ENST00000555178 RIOX1Q9H6W3 641 aa12.48□□□□□ -0.41
TDP1-211ENST00000555178 PRR12Q9ULL5 1215 aa12.48□□□□□ -0.41
TDP1-211ENST00000555178 MTMR6Q9Y217 621 aa12.48□□□□□ -0.41
TDP1-211ENST00000555178 CDKL5O76039 1030 aa12.47□□□□□ -0.41
TDP1-211ENST00000555178 KIF5BP33176 963 aa12.47□□□□□ -0.41
TDP1-211ENST00000555178 SSRP1Q08945 709 aaKnown RBP12.47□□□□□ -0.41
TDP1-211ENST00000555178 FOXD4L6Q3SYB3 417 aaPredicted RBP12.47□□□□□ -0.41
TDP1-211ENST00000555178 FOXD4L3Q6VB84 417 aaPredicted RBP12.47□□□□□ -0.41
TDP1-211ENST00000555178 FERMT3Q86UX7 667 aa12.47□□□□□ -0.41
TDP1-211ENST00000555178 CIZ1Q9ULV3 898 aaPredicted RBP12.47□□□□□ -0.41
TDP1-211ENST00000555178 C19orf81C9J6K1 198 aa12.47□□□□□ -0.41
TDP1-211ENST00000555178 AOC2O75106 756 aa12.47□□□□□ -0.41
TDP1-211ENST00000555178 BRD1O95696 1058 aa12.47□□□□□ -0.41
TDP1-211ENST00000555178 CPLX2Q6PUV4 134 aaKnown RBP12.47□□□□□ -0.41
TDP1-211ENST00000555178 FAM43AQ8N2R8 423 aa12.47□□□□□ -0.41
TDP1-211ENST00000555178 TNPO1Q92973 898 aaKnown RBP12.47□□□□□ -0.41
TDP1-211ENST00000555178 ATG4CQ96DT6 458 aa12.47□□□□□ -0.41
TDP1-211ENST00000555178 TCHHQ07283 1943 aa12.46□□□□□ -0.41
TDP1-211ENST00000555178 CXCL11O14625 94 aa12.46□□□□□ -0.41
TDP1-211ENST00000555178 WDR46O15213 610 aaKnown RBP12.46□□□□□ -0.41
TDP1-211ENST00000555178 SLC10A3P09131 477 aa12.46□□□□□ -0.41
TDP1-211ENST00000555178 IKQ13123 557 aaPredicted RBP12.46□□□□□ -0.41
TDP1-211ENST00000555178 SYDE2Q5VT97 1194 aa12.46□□□□□ -0.41
TDP1-211ENST00000555178 BTNL9Q6UXG8 535 aa12.46□□□□□ -0.41
TDP1-211ENST00000555178 CATSPERGQ6ZRH7 1159 aa12.46□□□□□ -0.41
TDP1-211ENST00000555178 COA7Q96BR5 231 aa12.46□□□□□ -0.41
TDP1-211ENST00000555178 ALG1Q9BT22 464 aa12.46□□□□□ -0.41
TDP1-211ENST00000555178 SH2D4AQ9H788 454 aa12.46□□□□□ -0.41
TDP1-211ENST00000555178 SYNPO2Q9UMS6 1093 aa12.46□□□□□ -0.41
TDP1-211ENST00000555178 STK36Q9NRP7 1315 aa12.46□□□□□ -0.41
TDP1-211ENST00000555178 A0A0G2JMZ2 1700 aa12.46□□□□□ -0.41
TDP1-211ENST00000555178 CCL15-CCL14A0A0B4J2E2 113 aa12.46□□□□□ -0.42
TDP1-211ENST00000555178 BTBD19C9JJ37 291 aa12.46□□□□□ -0.42
TDP1-211ENST00000555178 FLOT1O75955 427 aa12.46□□□□□ -0.42
TDP1-211ENST00000555178 APLP1P51693 650 aa12.46□□□□□ -0.42
TDP1-211ENST00000555178 PPP2R5BQ15173 497 aa12.46□□□□□ -0.42
TDP1-211ENST00000555178 CCL15Q16663 113 aa12.46□□□□□ -0.42
TDP1-211ENST00000555178 PPP4R3BQ5MIZ7 849 aa12.46□□□□□ -0.42
TDP1-211ENST00000555178 GPATCH4Q5T3I0 446 aaKnown RBP12.46□□□□□ -0.42
TDP1-211ENST00000555178 LPAR1Q92633 364 aa12.46□□□□□ -0.42
TDP1-211ENST00000555178 MTMR8Q96EF0 704 aa12.46□□□□□ -0.42
TDP1-211ENST00000555178 P2RX7Q99572 595 aaKnown RBP12.46□□□□□ -0.42
TDP1-211ENST00000555178 SPZ1Q9BXG8 430 aa12.46□□□□□ -0.42
TDP1-211ENST00000555178 RNF26Q9BY78 433 aaPredicted RBP12.46□□□□□ -0.42
TDP1-211ENST00000555178 TMOD4Q9NZQ9 345 aa12.46□□□□□ -0.42
TDP1-211ENST00000555178 IGF2BP3O00425 579 aaKnown RBP eCLIP12.45□□□□□ -0.42
TDP1-211ENST00000555178 PRPF3O43395 683 aaKnown RBP12.45□□□□□ -0.42
TDP1-211ENST00000555178 CYP2C8P10632 490 aa12.45□□□□□ -0.42
TDP1-211ENST00000555178 STAT2P52630 851 aa12.45□□□□□ -0.42
TDP1-211ENST00000555178 USP14P54578 494 aa12.45□□□□□ -0.42
TDP1-211ENST00000555178 SNAPC2Q13487 334 aa12.45□□□□□ -0.42
TDP1-211ENST00000555178 QRICH1Q2TAL8 776 aa12.45□□□□□ -0.42
TDP1-211ENST00000555178 WWC2Q6AWC2 1192 aa12.45□□□□□ -0.42
TDP1-211ENST00000555178 CCDC174Q6PII3 467 aa12.45□□□□□ -0.42
TDP1-211ENST00000555178 TRIM22Q8IYM9 498 aa12.45□□□□□ -0.42
TDP1-211ENST00000555178 VPS54Q9P1Q0 977 aa12.45□□□□□ -0.42
TDP1-211ENST00000555178 KCNJ14Q9UNX9 436 aa12.45□□□□□ -0.42
TDP1-211ENST00000555178 ZNF536O15090 1300 aa12.45□□□□□ -0.42
TDP1-211ENST00000555178 UNCXA6NJT0 531 aa12.45□□□□□ -0.42
TDP1-211ENST00000555178 ZSCAN22P10073 491 aaPredicted RBP12.45□□□□□ -0.42
TDP1-211ENST00000555178 NUCB2P80303 420 aa12.45□□□□□ -0.42
TDP1-211ENST00000555178 CDC37Q16543 378 aaPredicted RBP12.45□□□□□ -0.42
TDP1-211ENST00000555178 NOM1Q5C9Z4 860 aaKnown RBP12.45□□□□□ -0.42
TDP1-211ENST00000555178 FAM173BQ6P4H8 233 aa12.45□□□□□ -0.42
TDP1-211ENST00000555178 PAXIP1Q6ZW49 1069 aaPredicted RBP12.45□□□□□ -0.42
TDP1-211ENST00000555178 C8orf76Q96K31 380 aa12.45□□□□□ -0.42
TDP1-211ENST00000555178 ASCC2Q9H1I8 757 aaPredicted RBP12.45□□□□□ -0.42
TDP1-211ENST00000555178 DOCK3Q8IZD9 2030 aa12.44□□□□□ -0.42
TDP1-211ENST00000555178 SPDYE16A6NNV3 312 aaPredicted RBP12.44□□□□□ -0.42
TDP1-211ENST00000555178 H3BQV1 296 aa12.44□□□□□ -0.42
TDP1-211ENST00000555178 DEXIO95424 95 aa12.44□□□□□ -0.42
TDP1-211ENST00000555178 IFFO2Q5TF58 517 aa12.44□□□□□ -0.42
TDP1-211ENST00000555178 AGBL1Q96MI9 1066 aa12.44□□□□□ -0.42
TDP1-211ENST00000555178 SLF1Q9BQI6 1058 aa12.44□□□□□ -0.42
TDP1-211ENST00000555178 FEM1BQ9UK73 627 aa12.44□□□□□ -0.42
TDP1-211ENST00000555178 PPP1R9AQ9ULJ8 1098 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms