RNA–Protein interactions for RNA: ENST00000554270.5

PTPN21-205, Transcript of protein tyrosine phosphatase, non-receptor type 21, human

TSL 1 (best)

Gene PTPN21, Length 4,008 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN21-205	ENST00000554270	PNKP	Q96T60	521 aa		12.84	□□□□□ -0.35
PTPN21-205	ENST00000554270	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	12.84	□□□□□ -0.35
PTPN21-205	ENST00000554270	EXOC1	Q9NV70	894 aa		12.84	□□□□□ -0.35
PTPN21-205	ENST00000554270	TBC1D7	Q9P0N9	293 aa		12.84	□□□□□ -0.35
PTPN21-205	ENST00000554270	WDR19	Q8NEZ3	1342 aa		12.84	□□□□□ -0.35
PTPN21-205	ENST00000554270	C6orf229	H3BNL8	230 aa		12.84	□□□□□ -0.35
PTPN21-205	ENST00000554270	CCNT1	O60563	726 aa	Known RBP	12.84	□□□□□ -0.35
PTPN21-205	ENST00000554270	CAMTA2	O94983	1202 aa		12.84	□□□□□ -0.35
PTPN21-205	ENST00000554270	RPN1	P04843	607 aa	Known RBP	12.84	□□□□□ -0.35
PTPN21-205	ENST00000554270	TXK	P42681	527 aa		12.84	□□□□□ -0.35
PTPN21-205	ENST00000554270	CCDC42	Q96M95	316 aa		12.84	□□□□□ -0.35
PTPN21-205	ENST00000554270	MPHOSPH10	O00566	681 aa	Known RBP	12.84	□□□□□ -0.35
PTPN21-205	ENST00000554270	NR1I3	Q14994	352 aa		12.84	□□□□□ -0.35
PTPN21-205	ENST00000554270	TBC1D9B	Q66K14	1250 aa		12.84	□□□□□ -0.35
PTPN21-205	ENST00000554270	TYW1B	Q6NUM6	668 aa		12.84	□□□□□ -0.35
PTPN21-205	ENST00000554270	PTF1A	Q7RTS3	328 aa		12.84	□□□□□ -0.35
PTPN21-205	ENST00000554270	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.84	□□□□□ -0.35
PTPN21-205	ENST00000554270	TTF2	Q9UNY4	1162 aa	Known RBP	12.84	□□□□□ -0.35
PTPN21-205	ENST00000554270	RIMBP2	O15034	1052 aa		12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	LDHB	P07195	334 aa	Known RBP	12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	ERCC5	P28715	1186 aa	Predicted RBP	12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	SF3A3	Q12874	501 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	FBXL16	Q8N461	479 aa		12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	GBP3	Q9H0R5	595 aa		12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	DCP1A	Q9NPI6	582 aa	Predicted RBP	12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	GYPC	P04921	128 aa		12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	EPS15	P42566	896 aa		12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	PRCP	P42785	496 aa		12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	SPAG1	Q07617	926 aa		12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	PKN1	Q16512	942 aa		12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	KCTD19	Q17RG1	926 aa	Predicted RBP	12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	TRMT1L	Q7Z2T5	733 aa	Known RBP	12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	BLID	Q8IZY5	108 aa		12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	MARCH10	Q8NA82	808 aa	Predicted RBP	12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	JAKMIP2	Q96AA8	810 aa		12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	MED15	Q96RN5	788 aa		12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	NOC4L	Q9BVI4	516 aa	Known RBP	12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	BIN2	Q9UBW5	565 aa	Predicted RBP	12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270		H3BQF6	201 aa		12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	KRT18	P05783	430 aa	Known RBP	12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	PARP1	P09874	1014 aa	Known RBP	12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	CYP2C19	P33261	490 aa		12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	TEC	P42680	631 aa		12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	DPYD	Q12882	1025 aa		12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	TMTC3	Q6ZXV5	915 aa		12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	CERS3	Q8IU89	383 aa		12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	FERMT2	Q96AC1	680 aa		12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	SLC39A2	Q9NP94	309 aa		12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	RBM28	Q9NW13	759 aa	Known RBP	12.83	□□□□□ -0.36
PTPN21-205	ENST00000554270	NTSR2	O95665	410 aa		12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	USP17L2	Q6R6M4	530 aa		12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	FCHSD1	Q86WN1	690 aa		12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	TRIML1	Q8N9V2	468 aa		12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	SMCR8	Q8TEV9	937 aa	Predicted RBP	12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	NLRC4	Q9NPP4	1024 aa		12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	FRMPD2	Q68DX3	1309 aa	Predicted RBP	12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	CALM1	P0DP23	149 aa		12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	CALM2	P0DP24	149 aa		12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	CALM3	P0DP25	149 aa		12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	TROAP	Q12815	778 aa		12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	KIF5A	Q12840	1032 aa		12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	OR8K1	Q8NGG5	319 aa		12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	GSDMA	Q96QA5	445 aa		12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	STK36	Q9NRP7	1315 aa		12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	TTC26	A0AVF1	554 aa		12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	ZNF185	O15231	689 aa		12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	PRPF3	O43395	683 aa	Known RBP	12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	MDM2	Q00987	491 aa	Predicted RBP	12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	IK	Q13123	557 aa	Predicted RBP	12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	IFT81	Q8WYA0	676 aa		12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	GPCPD1	Q9NPB8	672 aa		12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	ADD3	Q9UEY8	706 aa	Known RBP	12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	SEC63	Q9UGP8	760 aa	Known RBP	12.82	□□□□□ -0.36
PTPN21-205	ENST00000554270	KRT86	O43790	486 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	KLK7	P49862	253 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	SLC7A5	Q01650	507 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	CASP8	Q14790	479 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	KRT26	Q7Z3Y9	468 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	FAM204A	Q9H8W3	233 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	ABHD10	Q9NUJ1	306 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	RMND1	Q9NWS8	449 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270		A0A1B0GTH6	734 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	CCDC151	A5D8V7	595 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	CLSTN1	O94985	981 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	TPTE2	Q6XPS3	522 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	C2CD5	Q86YS7	1000 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	CLEC10A	Q8IUN9	316 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	SAR1B	Q9Y6B6	198 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	RNF225	M0QZC1	329 aa	Predicted RBP	12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	BUB1	O43683	1085 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	ZEB2	O60315	1214 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	BMP15	O95972	392 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	RFC4	P35249	363 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	CYLC1	P35663	651 aa	Predicted RBP	12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	TNNI2	P48788	182 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	C2orf54	Q08AI8	447 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	SEC23A	Q15436	765 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	SHISA4	Q96DD7	197 aa		12.81	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms