RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 STAT3P40763 770 aa13.66□□□□□ -0.22
CCDC88C-208ENST00000554165 RGS2P41220 211 aa13.66□□□□□ -0.22
CCDC88C-208ENST00000554165 UBXN2AP68543 259 aa13.66□□□□□ -0.22
CCDC88C-208ENST00000554165 COL9A3Q14050 684 aaPredicted RBP13.66□□□□□ -0.22
CCDC88C-208ENST00000554165 BMP2KLQ5H9B9 411 aa13.66□□□□□ -0.22
CCDC88C-208ENST00000554165 ESR2Q92731 530 aa13.66□□□□□ -0.22
CCDC88C-208ENST00000554165 APBA2Q99767 749 aa13.66□□□□□ -0.22
CCDC88C-208ENST00000554165 GPCPD1Q9NPB8 672 aa13.66□□□□□ -0.22
CCDC88C-208ENST00000554165 IVNS1ABPQ9Y6Y0 642 aa13.66□□□□□ -0.22
CCDC88C-208ENST00000554165 MKI67P46013 3256 aaKnown RBP13.65□□□□□ -0.22
CCDC88C-208ENST00000554165 PGK2P07205 417 aa13.65□□□□□ -0.22
CCDC88C-208ENST00000554165 GJB1P08034 283 aa13.65□□□□□ -0.22
CCDC88C-208ENST00000554165 ZKSCAN1P17029 563 aaPredicted RBP13.65□□□□□ -0.22
CCDC88C-208ENST00000554165 CACNB2Q08289 660 aaPredicted RBP13.65□□□□□ -0.22
CCDC88C-208ENST00000554165 IKQ13123 557 aaPredicted RBP13.65□□□□□ -0.22
CCDC88C-208ENST00000554165 CCDC96Q2M329 555 aa13.65□□□□□ -0.22
CCDC88C-208ENST00000554165 SNRNP48Q6IEG0 339 aaKnown RBP13.65□□□□□ -0.22
CCDC88C-208ENST00000554165 STOX1Q6ZVD7 989 aa13.65□□□□□ -0.22
CCDC88C-208ENST00000554165 CYB5R4Q7L1T6 521 aa13.65□□□□□ -0.22
CCDC88C-208ENST00000554165 RIOX2Q8IUF8 465 aa13.65□□□□□ -0.22
CCDC88C-208ENST00000554165 SHCBP1Q8NEM2 672 aa13.65□□□□□ -0.22
CCDC88C-208ENST00000554165 MAP4K1Q92918 833 aa13.65□□□□□ -0.22
CCDC88C-208ENST00000554165 DEFB118Q96PH6 123 aa13.65□□□□□ -0.22
CCDC88C-208ENST00000554165 ESYT1Q9BSJ8 1104 aa13.65□□□□□ -0.22
CCDC88C-208ENST00000554165 LSG1Q9H089 658 aaKnown RBP13.65□□□□□ -0.22
CCDC88C-208ENST00000554165 SLC38A10Q9HBR0 1119 aa13.65□□□□□ -0.22
CCDC88C-208ENST00000554165 RBBP6Q7Z6E9 1792 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-208ENST00000554165 ZBED4O75132 1171 aa13.64□□□□□ -0.23
CCDC88C-208ENST00000554165 PCP11498 1178 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-208ENST00000554165 PRKAR2AP13861 404 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-208ENST00000554165 CCND3P30281 292 aaPredicted RBP13.64□□□□□ -0.23
CCDC88C-208ENST00000554165 CYP2C19P33261 490 aa13.64□□□□□ -0.23
CCDC88C-208ENST00000554165 ENAHQ8N8S7 591 aaPredicted RBP13.64□□□□□ -0.23
CCDC88C-208ENST00000554165 U2AF1L4Q8WU68 220 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-208ENST00000554165 AGBL1Q96MI9 1066 aa13.64□□□□□ -0.23
CCDC88C-208ENST00000554165 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.64□□□□□ -0.23
CCDC88C-208ENST00000554165 MROH8Q9H579 483 aa13.64□□□□□ -0.23
CCDC88C-208ENST00000554165 PAK6Q9NQU5 681 aaPredicted RBP13.64□□□□□ -0.23
CCDC88C-208ENST00000554165 RBM8AQ9Y5S9 174 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-208ENST00000554165 U3KPZ7 1027 aaPredicted RBP13.64□□□□□ -0.23
CCDC88C-208ENST00000554165 ZNF536O15090 1300 aa13.64□□□□□ -0.23
CCDC88C-208ENST00000554165 SLC25A27O95847 323 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 HOXC6P09630 235 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 GOLGA8HP0CJ92 632 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 PDHBP11177 359 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 FCER1AP12319 257 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 GJA8P48165 433 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 STAT2P52630 851 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 PPP4R3BQ5MIZ7 849 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 MAP3K21Q5TCX8 1036 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 CCDC174Q6PII3 467 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 CHST3Q7LGC8 479 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 DPP9Q86TI2 863 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 TRPV1Q8NER1 839 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 CHURC1Q8WUH1 139 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 DCAF4Q8WV16 495 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 ZSCAN10Q96SZ4 725 aaPredicted RBP13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 MMP19Q99542 508 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 TEX13BQ9BXU2 312 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 CPVLQ9H3G5 476 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 SENP2Q9HC62 589 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 HOMER2Q9NSB8 354 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 PRR12Q9ULL5 1215 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 SMCHD1A6NHR9 2005 aa13.63□□□□□ -0.23
CCDC88C-208ENST00000554165 ZNFX1Q9P2E3 1918 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-208ENST00000554165 E7EWF7 191 aa13.62□□□□□ -0.23
CCDC88C-208ENST00000554165 STRNO43815 780 aa13.62□□□□□ -0.23
CCDC88C-208ENST00000554165 SGPL1O95470 568 aa13.62□□□□□ -0.23
CCDC88C-208ENST00000554165 IGHA2P01877 340 aa13.62□□□□□ -0.23
CCDC88C-208ENST00000554165 CENPBP07199 599 aaPredicted RBP13.62□□□□□ -0.23
CCDC88C-208ENST00000554165 FAM160B2Q86V87 743 aa13.62□□□□□ -0.23
CCDC88C-208ENST00000554165 DGKHQ86XP1 1220 aa13.62□□□□□ -0.23
CCDC88C-208ENST00000554165 TTC14Q96N46 770 aa13.62□□□□□ -0.23
CCDC88C-208ENST00000554165 KRT23Q9C075 422 aa13.62□□□□□ -0.23
CCDC88C-208ENST00000554165 HMX1Q9NP08 348 aaPredicted RBP13.62□□□□□ -0.23
CCDC88C-208ENST00000554165 CTDP1Q9Y5B0 961 aaPredicted RBP13.62□□□□□ -0.23
CCDC88C-208ENST00000554165 TNKSO95271 1327 aa13.62□□□□□ -0.23
CCDC88C-208ENST00000554165 RPTORQ8N122 1335 aa13.62□□□□□ -0.23
CCDC88C-208ENST00000554165 CEP290O15078 2479 aa13.61□□□□□ -0.23
CCDC88C-208ENST00000554165 ATP2A1O14983 1001 aa13.61□□□□□ -0.23
CCDC88C-208ENST00000554165 TFRCP02786 760 aaKnown RBP13.61□□□□□ -0.23
CCDC88C-208ENST00000554165 SNHG28P0DPA3 235 aa13.61□□□□□ -0.23
CCDC88C-208ENST00000554165 ANTXR2P58335 489 aa13.61□□□□□ -0.23
CCDC88C-208ENST00000554165 ZNF543Q08ER8 600 aa13.61□□□□□ -0.23
CCDC88C-208ENST00000554165 SEC23AQ15436 765 aa13.61□□□□□ -0.23
CCDC88C-208ENST00000554165 PRAMEF19Q5SWL8 479 aa13.61□□□□□ -0.23
CCDC88C-208ENST00000554165 KIAA1211Q6ZU35 1233 aa13.61□□□□□ -0.23
CCDC88C-208ENST00000554165 IQCA1Q86XH1 822 aa13.61□□□□□ -0.23
CCDC88C-208ENST00000554165 ABRAQ8N0Z2 381 aa13.61□□□□□ -0.23
CCDC88C-208ENST00000554165 PNMA1Q8ND90 353 aa13.61□□□□□ -0.23
CCDC88C-208ENST00000554165 ANKS1AQ92625 1134 aa13.61□□□□□ -0.23
CCDC88C-208ENST00000554165 UBA5Q9GZZ9 404 aa13.61□□□□□ -0.23
CCDC88C-208ENST00000554165 CNNM2Q9H8M5 875 aa13.61□□□□□ -0.23
CCDC88C-208ENST00000554165 ANO2Q9NQ90 1003 aa13.61□□□□□ -0.23
CCDC88C-208ENST00000554165 GPHNQ9NQX3 736 aaPredicted RBP13.61□□□□□ -0.23
CCDC88C-208ENST00000554165 SLC27A2O14975 620 aa13.6□□□□□ -0.23
CCDC88C-208ENST00000554165 PLA2G6O60733 806 aa13.6□□□□□ -0.23
CCDC88C-208ENST00000554165 KCTD2Q14681 263 aa13.6□□□□□ -0.23
CCDC88C-208ENST00000554165 ZNF792Q3KQV3 632 aa13.6□□□□□ -0.23
CCDC88C-208ENST00000554165 MUM1L1Q5H9M0 696 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms