RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 C20orf194Q5TEA3 1177 aa15.36■□□□□ 0.05
PTCH1-218ENST00000548945 SNRNP48Q6IEG0 339 aaKnown RBP15.36■□□□□ 0.05
PTCH1-218ENST00000548945 MAMDC4Q6UXC1 1216 aa15.36■□□□□ 0.05
PTCH1-218ENST00000548945 ZNF467Q7Z7K2 595 aaPredicted RBP15.36■□□□□ 0.05
PTCH1-218ENST00000548945 BADQ92934 168 aa15.36■□□□□ 0.05
PTCH1-218ENST00000548945 MKL1Q969V6 931 aa15.36■□□□□ 0.05
PTCH1-218ENST00000548945 FERMT2Q96AC1 680 aa15.36■□□□□ 0.05
PTCH1-218ENST00000548945 TSEN34Q9BSV6 310 aaKnown RBP15.36■□□□□ 0.05
PTCH1-218ENST00000548945 CDH23Q9H251 3354 aa15.36■□□□□ 0.05
PTCH1-218ENST00000548945 DNAJC25-GNG10A0A024R161 153 aa15.35■□□□□ 0.05
PTCH1-218ENST00000548945 TRIM43BA6NCK2 446 aa15.35■□□□□ 0.05
PTCH1-218ENST00000548945 MINDY4BA8MYZ0 360 aa15.35■□□□□ 0.05
PTCH1-218ENST00000548945 GPAA1O43292 621 aa15.35■□□□□ 0.05
PTCH1-218ENST00000548945 TAL1P17542 331 aaPredicted RBP15.35■□□□□ 0.05
PTCH1-218ENST00000548945 SHHQ15465 462 aa15.35■□□□□ 0.05
PTCH1-218ENST00000548945 ZNF697Q5TEC3 545 aa15.35■□□□□ 0.05
PTCH1-218ENST00000548945 TRIM43Q96BQ3 446 aaPredicted RBP15.35■□□□□ 0.05
PTCH1-218ENST00000548945 DDX11Q96FC9 970 aa15.35■□□□□ 0.05
PTCH1-218ENST00000548945 GUCD1Q96NT3 240 aa15.35■□□□□ 0.05
PTCH1-218ENST00000548945 A0A1W2PQ45 241 aaPredicted RBP15.34■□□□□ 0.05
PTCH1-218ENST00000548945 A0A1W2PQY0 241 aa15.34■□□□□ 0.05
PTCH1-218ENST00000548945 KIAA0355O15063 1070 aa15.34■□□□□ 0.05
PTCH1-218ENST00000548945 ZBED4O75132 1171 aa15.34■□□□□ 0.05
PTCH1-218ENST00000548945 ADAMTS4O75173 837 aa15.34■□□□□ 0.05
PTCH1-218ENST00000548945 PGK1P00558 417 aa15.34■□□□□ 0.05
PTCH1-218ENST00000548945 CLTBP09497 229 aa15.34■□□□□ 0.05
PTCH1-218ENST00000548945 FDX1P10109 184 aa15.34■□□□□ 0.05
PTCH1-218ENST00000548945 TDO2P48775 406 aa15.34■□□□□ 0.05
PTCH1-218ENST00000548945 OAZ1P54368 228 aa15.34■□□□□ 0.05
PTCH1-218ENST00000548945 SMAD3P84022 425 aaKnown RBP15.34■□□□□ 0.05
PTCH1-218ENST00000548945 C9orf50Q5SZB4 431 aa15.34■□□□□ 0.05
PTCH1-218ENST00000548945 SH3RF1Q7Z6J0 888 aa15.34■□□□□ 0.05
PTCH1-218ENST00000548945 ZNF444Q8N0Y2 327 aaPredicted RBP15.34■□□□□ 0.05
PTCH1-218ENST00000548945 GMCL1P1Q8NEA9 526 aa15.34■□□□□ 0.05
PTCH1-218ENST00000548945 TOX2Q96NM4 488 aa15.34■□□□□ 0.05
PTCH1-218ENST00000548945 NUP88Q99567 741 aaPredicted RBP15.34■□□□□ 0.05
PTCH1-218ENST00000548945 SLC38A10Q9HBR0 1119 aa15.34■□□□□ 0.05
PTCH1-218ENST00000548945 EPB41L4AQ9HCS5 686 aaPredicted RBP15.34■□□□□ 0.05
PTCH1-218ENST00000548945 MTMR4Q9NYA4 1195 aa15.34■□□□□ 0.05
PTCH1-218ENST00000548945 CLIP2Q9UDT6 1046 aa15.34■□□□□ 0.05
PTCH1-218ENST00000548945 FBXO40Q9UH90 709 aa15.34■□□□□ 0.05
PTCH1-218ENST00000548945 FEM1BQ9UK73 627 aa15.34■□□□□ 0.05
PTCH1-218ENST00000548945 FAM184BQ9ULE4 1060 aa15.34■□□□□ 0.05
PTCH1-218ENST00000548945 PLIN4Q96Q06 1357 aa15.34■□□□□ 0.05
PTCH1-218ENST00000548945 VCANP13611 3396 aa15.33■□□□□ 0.05
PTCH1-218ENST00000548945 TTC28Q96AY4 2481 aa15.33■□□□□ 0.04
PTCH1-218ENST00000548945 MOXD2PA6NHM9 499 aa15.33■□□□□ 0.04
PTCH1-218ENST00000548945 PATL2C9JE40 543 aaKnown RBP15.33■□□□□ 0.04
PTCH1-218ENST00000548945 SNAI1O95863 264 aaPredicted RBP15.33■□□□□ 0.04
PTCH1-218ENST00000548945 TTLL1O95922 423 aa15.33■□□□□ 0.04
PTCH1-218ENST00000548945 ANKRD33Q7Z3H0 272 aa15.33■□□□□ 0.04
PTCH1-218ENST00000548945 NUP133Q8WUM0 1156 aa15.33■□□□□ 0.04
PTCH1-218ENST00000548945 NACAP1Q9BZK3 213 aa15.33■□□□□ 0.04
PTCH1-218ENST00000548945 RIPK3Q9Y572 518 aa15.33■□□□□ 0.04
PTCH1-218ENST00000548945 CTDP1Q9Y5B0 961 aaPredicted RBP15.33■□□□□ 0.04
PTCH1-218ENST00000548945 TTC41PQ6P2S7 1318 aa15.33■□□□□ 0.04
PTCH1-218ENST00000548945 ERC2O15083 957 aa15.32■□□□□ 0.04
PTCH1-218ENST00000548945 DUSP11O75319 330 aaKnown RBP15.32■□□□□ 0.04
PTCH1-218ENST00000548945 CST5P28325 142 aaPredicted RBP15.32■□□□□ 0.04
PTCH1-218ENST00000548945 ACLYP53396 1101 aa15.32■□□□□ 0.04
PTCH1-218ENST00000548945 KLHDC9Q8NEP7 349 aa15.32■□□□□ 0.04
PTCH1-218ENST00000548945 CHST13Q8NET6 341 aa15.32■□□□□ 0.04
PTCH1-218ENST00000548945 NEDD1Q8NHV4 660 aa15.32■□□□□ 0.04
PTCH1-218ENST00000548945 CEP95Q96GE4 821 aa15.32■□□□□ 0.04
PTCH1-218ENST00000548945 SYNRGQ9UMZ2 1314 aa15.32■□□□□ 0.04
PTCH1-218ENST00000548945 MYO9BQ13459 2157 aa15.31■□□□□ 0.04
PTCH1-218ENST00000548945 TMEM265A0A087WTH1 108 aa15.31■□□□□ 0.04
PTCH1-218ENST00000548945 M0R2C6 588 aa15.31■□□□□ 0.04
PTCH1-218ENST00000548945 APPP05067 770 aa15.31■□□□□ 0.04
PTCH1-218ENST00000548945 SLC3A2P08195 630 aaKnown RBP15.31■□□□□ 0.04
PTCH1-218ENST00000548945 RAG1P15918 1043 aa15.31■□□□□ 0.04
PTCH1-218ENST00000548945 PDE4BQ07343 736 aa15.31■□□□□ 0.04
PTCH1-218ENST00000548945 PPP4R3BQ5MIZ7 849 aa15.31■□□□□ 0.04
PTCH1-218ENST00000548945 CCSAPQ6IQ19 270 aaPredicted RBP15.31■□□□□ 0.04
PTCH1-218ENST00000548945 IFNL3Q8IZI9 196 aa15.31■□□□□ 0.04
PTCH1-218ENST00000548945 CPXCR1Q8N123 301 aa15.31■□□□□ 0.04
PTCH1-218ENST00000548945 STK11IPQ8N1F8 1099 aa15.31■□□□□ 0.04
PTCH1-218ENST00000548945 SEMA6BQ9H3T3 888 aa15.31■□□□□ 0.04
PTCH1-218ENST00000548945 ABHD16BQ9H3Z7 469 aa15.31■□□□□ 0.04
PTCH1-218ENST00000548945 STARD7Q9NQZ5 370 aa15.31■□□□□ 0.04
PTCH1-218ENST00000548945 ELP1O95163 1332 aa15.31■□□□□ 0.04
PTCH1-218ENST00000548945 DCDC2CA8MYV0 355 aa15.3■□□□□ 0.04
PTCH1-218ENST00000548945 PQBP1O60828 265 aaKnown RBP15.3■□□□□ 0.04
PTCH1-218ENST00000548945 PRDM1O75626 825 aa15.3■□□□□ 0.04
PTCH1-218ENST00000548945 TSPY3P0CV98 308 aa15.3■□□□□ 0.04
PTCH1-218ENST00000548945 TSPY8P0CW00 308 aa15.3■□□□□ 0.04
PTCH1-218ENST00000548945 BMP3P12645 472 aa15.3■□□□□ 0.04
PTCH1-218ENST00000548945 ITGB8P26012 769 aa15.3■□□□□ 0.04
PTCH1-218ENST00000548945 ACVR2BQ13705 512 aa15.3■□□□□ 0.04
PTCH1-218ENST00000548945 TSHZ3Q63HK5 1081 aa15.3■□□□□ 0.04
PTCH1-218ENST00000548945 MROH7Q68CQ1 1323 aa15.3■□□□□ 0.04
PTCH1-218ENST00000548945 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.3■□□□□ 0.04
PTCH1-218ENST00000548945 ANKRD35Q8N283 1001 aa15.3■□□□□ 0.04
PTCH1-218ENST00000548945 PCSK9Q8NBP7 692 aaKnown RBP15.3■□□□□ 0.04
PTCH1-218ENST00000548945 KIFC2Q96AC6 838 aa15.3■□□□□ 0.04
PTCH1-218ENST00000548945 LENG1Q96BZ8 264 aaPredicted RBP15.3■□□□□ 0.04
PTCH1-218ENST00000548945 FAM161BQ96MY7 647 aa15.3■□□□□ 0.04
PTCH1-218ENST00000548945 UPF3AQ9H1J1 476 aaKnown RBP15.3■□□□□ 0.04
PTCH1-218ENST00000548945 TMEM39AQ9NV64 488 aa15.3■□□□□ 0.04
PTCH1-218ENST00000548945 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms