RNA–Protein interactions for RNA: ENST00000543162.1

DDB1-221, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 4

Gene DDB1, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-221ENST00000543162 SMC1BQ8NDV3 1235 aa12.34□□□□□ -0.43
DDB1-221ENST00000543162 CHURC1Q8WUH1 139 aa12.34□□□□□ -0.43
DDB1-221ENST00000543162 CNKSR2Q8WXI2 1034 aa12.34□□□□□ -0.43
DDB1-221ENST00000543162 OPTNQ96CV9 577 aa12.34□□□□□ -0.43
DDB1-221ENST00000543162 JMJD4Q9H9V9 463 aa12.34□□□□□ -0.43
DDB1-221ENST00000543162 FEM1BQ9UK73 627 aa12.34□□□□□ -0.43
DDB1-221ENST00000543162 CXCL11O14625 94 aa12.33□□□□□ -0.44
DDB1-221ENST00000543162 PLA2G6O60733 806 aa12.33□□□□□ -0.44
DDB1-221ENST00000543162 BRD1O95696 1058 aa12.33□□□□□ -0.44
DDB1-221ENST00000543162 ZSCAN22P10073 491 aaPredicted RBP12.33□□□□□ -0.44
DDB1-221ENST00000543162 VCAM1P19320 739 aa12.33□□□□□ -0.44
DDB1-221ENST00000543162 YY1P25490 414 aa12.33□□□□□ -0.44
DDB1-221ENST00000543162 GUCY1B3Q02153 619 aa12.33□□□□□ -0.44
DDB1-221ENST00000543162 DGKZQ13574 1117 aa12.33□□□□□ -0.44
DDB1-221ENST00000543162 SH3D19Q5HYK7 790 aa12.33□□□□□ -0.44
DDB1-221ENST00000543162 FOXD4L5Q5VV16 416 aaPredicted RBP12.33□□□□□ -0.44
DDB1-221ENST00000543162 CST9Q5W186 159 aa12.33□□□□□ -0.44
DDB1-221ENST00000543162 RGS22Q8NE09 1264 aa12.33□□□□□ -0.44
DDB1-221ENST00000543162 FBXO18Q8NFZ0 1043 aa12.33□□□□□ -0.44
DDB1-221ENST00000543162 FOXD4L4Q8WXT5 416 aaPredicted RBP12.33□□□□□ -0.44
DDB1-221ENST00000543162 C12orf42Q96LP6 360 aa12.33□□□□□ -0.44
DDB1-221ENST00000543162 PIGSQ96S52 555 aa12.33□□□□□ -0.44
DDB1-221ENST00000543162 TANGO6Q9C0B7 1094 aa12.33□□□□□ -0.44
DDB1-221ENST00000543162 MTMR6Q9Y217 621 aa12.33□□□□□ -0.44
DDB1-221ENST00000543162 PNMA6FA0A0J9YX94 578 aa12.32□□□□□ -0.44
DDB1-221ENST00000543162 IRF6O14896 467 aa12.32□□□□□ -0.44
DDB1-221ENST00000543162 KRT40Q6A162 431 aa12.32□□□□□ -0.44
DDB1-221ENST00000543162 OTUD7BQ6GQQ9 843 aa12.32□□□□□ -0.44
DDB1-221ENST00000543162 HEATR3Q7Z4Q2 680 aa12.32□□□□□ -0.44
DDB1-221ENST00000543162 KIFC2Q96AC6 838 aa12.32□□□□□ -0.44
DDB1-221ENST00000543162 MTMR8Q96EF0 704 aa12.32□□□□□ -0.44
DDB1-221ENST00000543162 RPAP3Q9H6T3 665 aaPredicted RBP12.32□□□□□ -0.44
DDB1-221ENST00000543162 GJB4Q9NTQ9 266 aa12.32□□□□□ -0.44
DDB1-221ENST00000543162 VPS54Q9P1Q0 977 aa12.32□□□□□ -0.44
DDB1-221ENST00000543162 PRR12Q9ULL5 1215 aa12.32□□□□□ -0.44
DDB1-221ENST00000543162 KCNH4Q9UQ05 1017 aa12.32□□□□□ -0.44
DDB1-221ENST00000543162 ZDHHC9Q9Y397 364 aa12.32□□□□□ -0.44
DDB1-221ENST00000543162 PASKQ96RG2 1323 aa12.32□□□□□ -0.44
DDB1-221ENST00000543162 ZBTB5O15062 677 aa12.31□□□□□ -0.44
DDB1-221ENST00000543162 TOMM70O94826 608 aa12.31□□□□□ -0.44
DDB1-221ENST00000543162 HUNKP57058 714 aa12.31□□□□□ -0.44
DDB1-221ENST00000543162 SAFBQ15424 915 aaKnown RBP eCLIP12.31□□□□□ -0.44
DDB1-221ENST00000543162 CDC37Q16543 378 aaPredicted RBP12.31□□□□□ -0.44
DDB1-221ENST00000543162 WWC2Q6AWC2 1192 aa12.31□□□□□ -0.44
DDB1-221ENST00000543162 MCTP1Q6DN14 999 aa12.31□□□□□ -0.44
DDB1-221ENST00000543162 SAMD1Q6SPF0 538 aaPredicted RBP12.31□□□□□ -0.44
DDB1-221ENST00000543162 GPKOWQ92917 476 aaPredicted RBP eCLIP12.31□□□□□ -0.44
DDB1-221ENST00000543162 SLF1Q9BQI6 1058 aa12.31□□□□□ -0.44
DDB1-221ENST00000543162 SH3GLB2Q9NR46 395 aa12.31□□□□□ -0.44
DDB1-221ENST00000543162 FBXO28Q9NVF7 368 aa12.31□□□□□ -0.44
DDB1-221ENST00000543162 PTPRFP10586 1907 aa12.31□□□□□ -0.44
DDB1-221ENST00000543162 A0A0G2JLL6 359 aaPredicted RBP12.3□□□□□ -0.44
DDB1-221ENST00000543162 hCG_1984214I3L0E3 225 aa12.3□□□□□ -0.44
DDB1-221ENST00000543162 STXBP3O00186 592 aa12.3□□□□□ -0.44
DDB1-221ENST00000543162 FLOT1O75955 427 aa12.3□□□□□ -0.44
DDB1-221ENST00000543162 F13A1P00488 732 aa12.3□□□□□ -0.44
DDB1-221ENST00000543162 MMP1P03956 469 aa12.3□□□□□ -0.44
DDB1-221ENST00000543162 GJA5P36382 358 aa12.3□□□□□ -0.44
DDB1-221ENST00000543162 SNAPC2Q13487 334 aa12.3□□□□□ -0.44
DDB1-221ENST00000543162 QRICH1Q2TAL8 776 aa12.3□□□□□ -0.44
DDB1-221ENST00000543162 GADL1Q6ZQY3 521 aa12.3□□□□□ -0.44
DDB1-221ENST00000543162 PRRT2Q7Z6L0 340 aaPredicted RBP12.3□□□□□ -0.44
DDB1-221ENST00000543162 FERMT3Q86UX7 667 aa12.3□□□□□ -0.44
DDB1-221ENST00000543162 FAM177A1Q8N128 213 aaPredicted RBP12.3□□□□□ -0.44
DDB1-221ENST00000543162 ZNF713Q8N859 430 aaPredicted RBP12.3□□□□□ -0.44
DDB1-221ENST00000543162 PRPF38AQ8NAV1 312 aaKnown RBP12.3□□□□□ -0.44
DDB1-221ENST00000543162 PROCA1Q8NCQ7 364 aaPredicted RBP12.3□□□□□ -0.44
DDB1-221ENST00000543162 CCDC148Q8NFR7 591 aa12.3□□□□□ -0.44
DDB1-221ENST00000543162 CCDC12Q8WUD4 166 aaPredicted RBP12.3□□□□□ -0.44
DDB1-221ENST00000543162 WNK4Q96J92 1243 aa12.3□□□□□ -0.44
DDB1-221ENST00000543162 BARHL2Q9NY43 387 aa12.3□□□□□ -0.44
DDB1-221ENST00000543162 KCNJ14Q9UNX9 436 aa12.3□□□□□ -0.44
DDB1-221ENST00000543162 USP17L15C9J2P7 530 aa12.29□□□□□ -0.44
DDB1-221ENST00000543162 USP17L13C9JLJ4 530 aa12.29□□□□□ -0.44
DDB1-221ENST00000543162 USP17L11C9JVI0 530 aa12.29□□□□□ -0.44
DDB1-221ENST00000543162 USP17L18D6R9N7 530 aa12.29□□□□□ -0.44
DDB1-221ENST00000543162 USP17L22D6RA61 530 aa12.29□□□□□ -0.44
DDB1-221ENST00000543162 USP17L17D6RBQ6 530 aa12.29□□□□□ -0.44
DDB1-221ENST00000543162 USP17L19D6RCP7 530 aa12.29□□□□□ -0.44
DDB1-221ENST00000543162 USP17L20D6RJB6 530 aa12.29□□□□□ -0.44
DDB1-221ENST00000543162 CALML3P27482 149 aa12.29□□□□□ -0.44
DDB1-221ENST00000543162 NAPAP54920 295 aa12.29□□□□□ -0.44
DDB1-221ENST00000543162 NLRP5P59047 1200 aa12.29□□□□□ -0.44
DDB1-221ENST00000543162 SNAP25P60880 206 aa12.29□□□□□ -0.44
DDB1-221ENST00000543162 USP17L24Q0WX57 530 aa12.29□□□□□ -0.44
DDB1-221ENST00000543162 TRAF1Q13077 416 aa12.29□□□□□ -0.44
DDB1-221ENST00000543162 GNL2Q13823 731 aaKnown RBP12.29□□□□□ -0.44
DDB1-221ENST00000543162 CATSPERGQ6ZRH7 1159 aa12.29□□□□□ -0.44
DDB1-221ENST00000543162 FASTKD5Q7L8L6 764 aaKnown RBP12.29□□□□□ -0.44
DDB1-221ENST00000543162 FBXO11Q86XK2 927 aa12.29□□□□□ -0.44
DDB1-221ENST00000543162 ZNF784Q8NCA9 323 aaPredicted RBP12.29□□□□□ -0.44
DDB1-221ENST00000543162 TNPO1Q92973 898 aaKnown RBP12.29□□□□□ -0.44
DDB1-221ENST00000543162 PHF20Q9BVI0 1012 aa12.29□□□□□ -0.44
DDB1-221ENST00000543162 ZSCAN16Q9H4T2 348 aaPredicted RBP12.29□□□□□ -0.44
DDB1-221ENST00000543162 BRMS1Q9HCU9 246 aa12.29□□□□□ -0.44
DDB1-221ENST00000543162 PPP1R9AQ9ULJ8 1098 aa12.29□□□□□ -0.44
DDB1-221ENST00000543162 ATP6V1DQ9Y5K8 247 aa12.29□□□□□ -0.44
DDB1-221ENST00000543162 LOC285556D6RIA3 1793 aa12.28□□□□□ -0.44
DDB1-221ENST00000543162 PPP1R11O60927 126 aaPredicted RBP12.28□□□□□ -0.44
DDB1-221ENST00000543162 FDX1P10109 184 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms