RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 ERVK-24P63145 666 aa15.26■□□□□ 0.03
PTPN1-202ENST00000541713 ARID5AQ03989 594 aa15.26■□□□□ 0.03
PTPN1-202ENST00000541713 DUSP10Q9Y6W6 482 aa15.26■□□□□ 0.03
PTPN1-202ENST00000541713 CYTH3O43739 400 aa15.26■□□□□ 0.03
PTPN1-202ENST00000541713 KIF5BP33176 963 aa15.26■□□□□ 0.03
PTPN1-202ENST00000541713 PLA2G4AP47712 749 aa15.26■□□□□ 0.03
PTPN1-202ENST00000541713 CHMP4BP1P59074 171 aa15.26■□□□□ 0.03
PTPN1-202ENST00000541713 SNAP25P60880 206 aa15.26■□□□□ 0.03
PTPN1-202ENST00000541713 TERF2Q15554 542 aa15.26■□□□□ 0.03
PTPN1-202ENST00000541713 TSR1Q2NL82 804 aaKnown RBP15.26■□□□□ 0.03
PTPN1-202ENST00000541713 FAM196AQ6ZSG2 479 aa15.26■□□□□ 0.03
PTPN1-202ENST00000541713 SMCR8Q8TEV9 937 aaPredicted RBP15.26■□□□□ 0.03
PTPN1-202ENST00000541713 PIGSQ96S52 555 aa15.26■□□□□ 0.03
PTPN1-202ENST00000541713 TANGO6Q9C0B7 1094 aa15.26■□□□□ 0.03
PTPN1-202ENST00000541713 A0A1B0GTH6 734 aa15.26■□□□□ 0.03
PTPN1-202ENST00000541713 NAP1L1P55209 391 aaKnown RBP15.26■□□□□ 0.03
PTPN1-202ENST00000541713 PDE4DQ08499 809 aa15.26■□□□□ 0.03
PTPN1-202ENST00000541713 AMOTL1Q8IY63 956 aa15.26■□□□□ 0.03
PTPN1-202ENST00000541713 GSPT2Q8IYD1 628 aaKnown RBP15.26■□□□□ 0.03
PTPN1-202ENST00000541713 TEX11Q8IYF3 940 aa15.26■□□□□ 0.03
PTPN1-202ENST00000541713 TMEM47Q9BQJ4 181 aa15.26■□□□□ 0.03
PTPN1-202ENST00000541713 RBM28Q9NW13 759 aaKnown RBP15.26■□□□□ 0.03
PTPN1-202ENST00000541713 ABCC6O95255 1503 aa15.26■□□□□ 0.03
PTPN1-202ENST00000541713 MFAP3LO75121 409 aa15.25■□□□□ 0.03
PTPN1-202ENST00000541713 OAS2P29728 719 aaKnown RBP15.25■□□□□ 0.03
PTPN1-202ENST00000541713 TNNT3P45378 269 aaPredicted RBP15.25■□□□□ 0.03
PTPN1-202ENST00000541713 TNNI2P48788 182 aa15.25■□□□□ 0.03
PTPN1-202ENST00000541713 KIAA1328Q86T90 577 aa15.25■□□□□ 0.03
PTPN1-202ENST00000541713 CCDC102AQ96A19 550 aa15.25■□□□□ 0.03
PTPN1-202ENST00000541713 FERMT2Q96AC1 680 aa15.25■□□□□ 0.03
PTPN1-202ENST00000541713 FAM207AQ9NSI2 230 aaPredicted RBP15.25■□□□□ 0.03
PTPN1-202ENST00000541713 AGPAT5Q9NUQ2 364 aa15.25■□□□□ 0.03
PTPN1-202ENST00000541713 ZNF142P52746 1687 aaPredicted RBP15.25■□□□□ 0.03
PTPN1-202ENST00000541713 TTC26A0AVF1 554 aa15.25■□□□□ 0.03
PTPN1-202ENST00000541713 SMCO2A6NFE2 343 aa15.25■□□□□ 0.03
PTPN1-202ENST00000541713 PARP1P09874 1014 aaKnown RBP15.25■□□□□ 0.03
PTPN1-202ENST00000541713 TAL1P17542 331 aaPredicted RBP15.25■□□□□ 0.03
PTPN1-202ENST00000541713 BTDP43251 543 aa15.25■□□□□ 0.03
PTPN1-202ENST00000541713 RNASE9P60153 205 aaKnown RBP15.25■□□□□ 0.03
PTPN1-202ENST00000541713 TBX2Q13207 712 aaPredicted RBP15.25■□□□□ 0.03
PTPN1-202ENST00000541713 SLC35G1Q2M3R5 365 aa15.25■□□□□ 0.03
PTPN1-202ENST00000541713 KRT26Q7Z3Y9 468 aa15.25■□□□□ 0.03
PTPN1-202ENST00000541713 MAGEC2Q9UBF1 373 aaPredicted RBP15.25■□□□□ 0.03
PTPN1-202ENST00000541713 ATP2C1P98194 919 aaPredicted RBP15.25■□□□□ 0.03
PTPN1-202ENST00000541713 PFKFB3Q16875 520 aaPredicted RBP15.25■□□□□ 0.03
PTPN1-202ENST00000541713 FBXO33Q7Z6M2 555 aa15.25■□□□□ 0.03
PTPN1-202ENST00000541713 CSGALNACT2Q8N6G5 542 aa15.25■□□□□ 0.03
PTPN1-202ENST00000541713 BRIP1Q9BX63 1249 aa15.25■□□□□ 0.03
PTPN1-202ENST00000541713 ARFGAP3Q9NP61 516 aa15.25■□□□□ 0.03
PTPN1-202ENST00000541713 N4BP1O75113 896 aaKnown RBP15.24■□□□□ 0.03
PTPN1-202ENST00000541713 PLCG1P19174 1290 aa15.24■□□□□ 0.03
PTPN1-202ENST00000541713 TXNRD1Q16881 649 aa15.24■□□□□ 0.03
PTPN1-202ENST00000541713 CCDC155Q8N6L0 562 aa15.24■□□□□ 0.03
PTPN1-202ENST00000541713 GTPBP4Q9BZE4 634 aaKnown RBP15.24■□□□□ 0.03
PTPN1-202ENST00000541713 PKD1L3Q7Z443 1732 aa15.24■□□□□ 0.03
PTPN1-202ENST00000541713 PHLPP2Q6ZVD8 1323 aa15.24■□□□□ 0.03
PTPN1-202ENST00000541713 TCP10Q12799 353 aa15.24■□□□□ 0.03
PTPN1-202ENST00000541713 UBE2SQ16763 222 aa15.24■□□□□ 0.03
PTPN1-202ENST00000541713 DOK7Q18PE1 504 aa15.24■□□□□ 0.03
PTPN1-202ENST00000541713 SOGA3Q5TF21 947 aa15.24■□□□□ 0.03
PTPN1-202ENST00000541713 CAGE1Q8TC20 777 aa15.24■□□□□ 0.03
PTPN1-202ENST00000541713 RPGRQ92834 1020 aaKnown RBP15.24■□□□□ 0.03
PTPN1-202ENST00000541713 GSDMAQ96QA5 445 aa15.24■□□□□ 0.03
PTPN1-202ENST00000541713 EYA3Q99504 573 aa15.24■□□□□ 0.03
PTPN1-202ENST00000541713 NUP188Q5SRE5 1749 aa15.24■□□□□ 0.03
PTPN1-202ENST00000541713 USP17L5A8MUK1 530 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 ANKRD65E5RJM6 399 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 CALM1P0DP23 149 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 CALM2P0DP24 149 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 CALM3P0DP25 149 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 ERCC5P28715 1186 aaPredicted RBP15.23■□□□□ 0.03
PTPN1-202ENST00000541713 CXCR5P32302 372 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 GTF2IP78347 998 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 LRRC15Q8TF66 581 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 SMARCAL1Q9NZC9 954 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 TOGARAM1Q9Y4F4 1720 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 POTEMA6NI47 508 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 H2AFXP16104 143 aaPredicted RBP15.23■□□□□ 0.03
PTPN1-202ENST00000541713 LMAN1P49257 510 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 TCP11X2Q5H9J9 407 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 MFSD14BQ5SR56 506 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 NOA1Q8NC60 698 aaKnown RBP15.23■□□□□ 0.03
PTPN1-202ENST00000541713 CRACR2AQ9BSW2 395 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 MMRN2Q9H8L6 949 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 ATRNO75882 1429 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 CTAGE9A4FU28 777 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 G3V3G9 751 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 TBC1D8BQ0IIM8 1120 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 STK4Q13043 487 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 CCDC122Q5T0U0 273 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 DCAF8Q5TAQ9 597 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 APTXQ7Z2E3 356 aaKnown RBP15.23■□□□□ 0.03
PTPN1-202ENST00000541713 ZNF579Q8NAF0 562 aaKnown RBP15.23■□□□□ 0.03
PTPN1-202ENST00000541713 GOLGA1Q92805 767 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 PNKPQ96T60 521 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 MRFAP1Q9Y605 127 aa15.23■□□□□ 0.03
PTPN1-202ENST00000541713 FAM237AA0A1B0GTK4 181 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 ZNF185O15231 689 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 PLEKP08567 350 aaPredicted RBP15.22■□□□□ 0.03
PTPN1-202ENST00000541713 SYCP1Q15431 976 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms