RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 PTPRAP18433 802 aa20.41■□□□□ 0.86
CLIP1-215ENST00000541108 NLRP5P59047 1200 aa20.41■□□□□ 0.86
CLIP1-215ENST00000541108 WWC2Q6AWC2 1192 aa20.41■□□□□ 0.86
CLIP1-215ENST00000541108 HOMER1Q86YM7 354 aa20.41■□□□□ 0.86
CLIP1-215ENST00000541108 FEZ1Q99689 392 aa20.41■□□□□ 0.86
CLIP1-215ENST00000541108 ELP1O95163 1332 aa20.41■□□□□ 0.86
CLIP1-215ENST00000541108 TMEM232C9JQI7 657 aa20.4■□□□□ 0.86
CLIP1-215ENST00000541108 STXBP3O00186 592 aa20.4■□□□□ 0.86
CLIP1-215ENST00000541108 SLC16A2P36021 539 aa20.4■□□□□ 0.86
CLIP1-215ENST00000541108 USP14P54578 494 aa20.4■□□□□ 0.86
CLIP1-215ENST00000541108 MAP3K9P80192 1104 aa20.4■□□□□ 0.86
CLIP1-215ENST00000541108 NPY5RQ15761 445 aa20.4■□□□□ 0.86
CLIP1-215ENST00000541108 HEATR3Q7Z4Q2 680 aa20.4■□□□□ 0.86
CLIP1-215ENST00000541108 SPICE1Q8N0Z3 855 aa20.4■□□□□ 0.86
CLIP1-215ENST00000541108 GLIS2Q9BZE0 524 aaPredicted RBP20.4■□□□□ 0.86
CLIP1-215ENST00000541108 ZMYND12Q9H0C1 365 aa20.4■□□□□ 0.86
CLIP1-215ENST00000541108 FIBPO43427 364 aa20.39■□□□□ 0.86
CLIP1-215ENST00000541108 STAT2P52630 851 aa20.39■□□□□ 0.86
CLIP1-215ENST00000541108 KIAA1755Q5JYT7 1200 aa20.39■□□□□ 0.86
CLIP1-215ENST00000541108 DAGLBQ8NCG7 672 aa20.39■□□□□ 0.86
CLIP1-215ENST00000541108 CHURC1Q8WUH1 139 aa20.39■□□□□ 0.86
CLIP1-215ENST00000541108 GPKOWQ92917 476 aaPredicted RBP eCLIP20.39■□□□□ 0.86
CLIP1-215ENST00000541108 CDCA5Q96FF9 252 aa20.39■□□□□ 0.86
CLIP1-215ENST00000541108 POLR3EQ9NVU0 708 aa20.39■□□□□ 0.86
CLIP1-215ENST00000541108 TFIP11Q9UBB9 837 aaKnown RBP20.39■□□□□ 0.86
CLIP1-215ENST00000541108 ISY1Q9ULR0 285 aaKnown RBP20.39■□□□□ 0.86
CLIP1-215ENST00000541108 ESYT2A0FGR8 921 aa20.38■□□□□ 0.85
CLIP1-215ENST00000541108 IREB2P48200 963 aaKnown RBP20.38■□□□□ 0.85
CLIP1-215ENST00000541108 CCDC84Q86UT8 332 aaPredicted RBP20.38■□□□□ 0.85
CLIP1-215ENST00000541108 ZNF280CQ8ND82 737 aa20.38■□□□□ 0.85
CLIP1-215ENST00000541108 NUP88Q99567 741 aaPredicted RBP20.38■□□□□ 0.85
CLIP1-215ENST00000541108 GDPD2Q9HCC8 539 aa20.38■□□□□ 0.85
CLIP1-215ENST00000541108 PCDHA4Q9UN74 947 aa20.38■□□□□ 0.85
CLIP1-215ENST00000541108 C19orf81C9J6K1 198 aa20.38■□□□□ 0.85
CLIP1-215ENST00000541108 WDR46O15213 610 aaKnown RBP20.38■□□□□ 0.85
CLIP1-215ENST00000541108 GNA11P29992 359 aa20.38■□□□□ 0.85
CLIP1-215ENST00000541108 BACE1P56817 501 aa20.38■□□□□ 0.85
CLIP1-215ENST00000541108 MAP3K11Q16584 847 aa20.38■□□□□ 0.85
CLIP1-215ENST00000541108 RILPL1Q5EBL4 403 aa20.38■□□□□ 0.85
CLIP1-215ENST00000541108 SYDE2Q5VT97 1194 aa20.38■□□□□ 0.85
CLIP1-215ENST00000541108 TYW1BQ6NUM6 668 aa20.38■□□□□ 0.85
CLIP1-215ENST00000541108 PPP1R18Q6NYC8 613 aa20.38■□□□□ 0.85
CLIP1-215ENST00000541108 FAM160B2Q86V87 743 aa20.38■□□□□ 0.85
CLIP1-215ENST00000541108 SPATA32Q96LK8 384 aa20.38■□□□□ 0.85
CLIP1-215ENST00000541108 USP28Q96RU2 1077 aa20.38■□□□□ 0.85
CLIP1-215ENST00000541108 RTEL1Q9NZ71 1219 aa20.38■□□□□ 0.85
CLIP1-215ENST00000541108 RCOR1Q9UKL0 485 aa20.38■□□□□ 0.85
CLIP1-215ENST00000541108 FZD1Q9UP38 647 aa20.38■□□□□ 0.85
CLIP1-215ENST00000541108 TRAK2O60296 914 aa20.37■□□□□ 0.85
CLIP1-215ENST00000541108 NAPAP54920 295 aa20.37■□□□□ 0.85
CLIP1-215ENST00000541108 SPP2Q13103 211 aa20.37■□□□□ 0.85
CLIP1-215ENST00000541108 NR5A1Q13285 461 aa20.37■□□□□ 0.85
CLIP1-215ENST00000541108 FAM83BQ5T0W9 1011 aa20.37■□□□□ 0.85
CLIP1-215ENST00000541108 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.37■□□□□ 0.85
CLIP1-215ENST00000541108 BLIDQ8IZY5 108 aa20.37■□□□□ 0.85
CLIP1-215ENST00000541108 OXER1Q8TDS5 423 aa20.37■□□□□ 0.85
CLIP1-215ENST00000541108 LEO1Q8WVC0 666 aaPredicted RBP20.37■□□□□ 0.85
CLIP1-215ENST00000541108 C6orf50Q9HD87 102 aa20.37■□□□□ 0.85
CLIP1-215ENST00000541108 FEM1BQ9UK73 627 aa20.37■□□□□ 0.85
CLIP1-215ENST00000541108 CLEC11AQ9Y240 323 aa20.37■□□□□ 0.85
CLIP1-215ENST00000541108 ZHX2Q9Y6X8 837 aa20.37■□□□□ 0.85
CLIP1-215ENST00000541108 TRAF1Q13077 416 aa20.36■□□□□ 0.85
CLIP1-215ENST00000541108 IKQ13123 557 aaPredicted RBP20.36■□□□□ 0.85
CLIP1-215ENST00000541108 ZYXQ15942 572 aaKnown RBP20.36■□□□□ 0.85
CLIP1-215ENST00000541108 DLK2Q6UY11 383 aa20.36■□□□□ 0.85
CLIP1-215ENST00000541108 TNFRSF25Q93038 417 aa20.36■□□□□ 0.85
CLIP1-215ENST00000541108 CSADQ9Y600 493 aa20.36■□□□□ 0.85
CLIP1-215ENST00000541108 SMCO2A6NFE2 343 aa20.35■□□□□ 0.85
CLIP1-215ENST00000541108 NASPP49321 788 aaPredicted RBP20.35■□□□□ 0.85
CLIP1-215ENST00000541108 UBE2HP62256 183 aa20.35■□□□□ 0.85
CLIP1-215ENST00000541108 PRKG1Q13976 671 aa20.35■□□□□ 0.85
CLIP1-215ENST00000541108 CDC37Q16543 378 aaPredicted RBP20.35■□□□□ 0.85
CLIP1-215ENST00000541108 ANKRD13AQ8IZ07 590 aa20.35■□□□□ 0.85
CLIP1-215ENST00000541108 BICD2Q8TD16 824 aa20.35■□□□□ 0.85
CLIP1-215ENST00000541108 RRAGCQ9HB90 399 aa20.35■□□□□ 0.85
CLIP1-215ENST00000541108 PRR12Q9ULL5 1215 aa20.35■□□□□ 0.85
CLIP1-215ENST00000541108 M0R2N6 131 aa20.35■□□□□ 0.85
CLIP1-215ENST00000541108 YEATS4O95619 227 aa20.35■□□□□ 0.85
CLIP1-215ENST00000541108 MBD3O95983 291 aa20.35■□□□□ 0.85
CLIP1-215ENST00000541108 MTMR2Q13614 643 aa20.35■□□□□ 0.85
CLIP1-215ENST00000541108 VGLL4Q14135 290 aa20.35■□□□□ 0.85
CLIP1-215ENST00000541108 QRICH1Q2TAL8 776 aa20.35■□□□□ 0.85
CLIP1-215ENST00000541108 KLHL40Q2TBA0 621 aa20.35■□□□□ 0.85
CLIP1-215ENST00000541108 RBM46Q8TBY0 533 aaKnown RBP20.35■□□□□ 0.85
CLIP1-215ENST00000541108 C12orf42Q96LP6 360 aa20.35■□□□□ 0.85
CLIP1-215ENST00000541108 AMNQ9BXJ7 453 aa20.35■□□□□ 0.85
CLIP1-215ENST00000541108 AFG3L2Q9Y4W6 797 aa20.35■□□□□ 0.85
CLIP1-215ENST00000541108 SNCAIPQ9Y6H5 919 aa20.35■□□□□ 0.85
CLIP1-215ENST00000541108 DDX49Q9Y6V7 483 aaKnown RBP20.35■□□□□ 0.85
CLIP1-215ENST00000541108 PHIPQ8WWQ0 1821 aa20.34■□□□□ 0.85
CLIP1-215ENST00000541108 PAPPA2Q9BXP8 1791 aa20.34■□□□□ 0.85
CLIP1-215ENST00000541108 UNCXA6NJT0 531 aa20.34■□□□□ 0.85
CLIP1-215ENST00000541108 ANO1Q5XXA6 986 aa20.34■□□□□ 0.85
CLIP1-215ENST00000541108 GLT8D2Q9H1C3 349 aa20.34■□□□□ 0.85
CLIP1-215ENST00000541108 EMILIN3Q9NT22 766 aa20.34■□□□□ 0.85
CLIP1-215ENST00000541108 PPP1R11O60927 126 aaPredicted RBP20.33■□□□□ 0.85
CLIP1-215ENST00000541108 TRAPPC10P48553 1259 aa20.33■□□□□ 0.85
CLIP1-215ENST00000541108 ARMC9Q7Z3E5 817 aa20.33■□□□□ 0.85
CLIP1-215ENST00000541108 LDHDQ86WU2 507 aa20.33■□□□□ 0.85
CLIP1-215ENST00000541108 LINC00301Q8NCQ3 95 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms