RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 SEMA3EO15041 775 aa22.85■■□□□ 1.25
TMEM260-203ENST00000539559 NDUFA10O95299 355 aa22.85■■□□□ 1.25
TMEM260-203ENST00000539559 GNAT2P19087 354 aa22.85■■□□□ 1.25
TMEM260-203ENST00000539559 SLC4A8Q2Y0W8 1093 aa22.85■■□□□ 1.25
TMEM260-203ENST00000539559 HSP90B2PQ58FF3 399 aa22.85■■□□□ 1.25
TMEM260-203ENST00000539559 TNFRSF25Q93038 417 aa22.85■■□□□ 1.25
TMEM260-203ENST00000539559 FAM204AQ9H8W3 233 aa22.85■■□□□ 1.25
TMEM260-203ENST00000539559 USP21Q9UK80 565 aa22.85■■□□□ 1.25
TMEM260-203ENST00000539559 TIAM2Q8IVF5 1701 aa22.85■■□□□ 1.25
TMEM260-203ENST00000539559 IQUBQ8NA54 791 aa22.85■■□□□ 1.25
TMEM260-203ENST00000539559 PRPF3O43395 683 aaKnown RBP22.85■■□□□ 1.25
TMEM260-203ENST00000539559 ATP2C1P98194 919 aaPredicted RBP22.85■■□□□ 1.25
TMEM260-203ENST00000539559 SUSD4Q5VX71 490 aa22.85■■□□□ 1.25
TMEM260-203ENST00000539559 CATIPQ7Z7H3 387 aa22.85■■□□□ 1.25
TMEM260-203ENST00000539559 IRF2BP1Q8IU81 584 aa22.85■■□□□ 1.25
TMEM260-203ENST00000539559 RWDD2AQ9UIY3 292 aa22.85■■□□□ 1.25
TMEM260-203ENST00000539559 SLC20A2Q08357 652 aa22.84■■□□□ 1.25
TMEM260-203ENST00000539559 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.84■■□□□ 1.25
TMEM260-203ENST00000539559 SRBD1Q8N5C6 995 aaKnown RBP22.84■■□□□ 1.25
TMEM260-203ENST00000539559 GPIHBP1Q8IV16 184 aa22.84■■□□□ 1.25
TMEM260-203ENST00000539559 PLCD3Q8N3E9 789 aa22.84■■□□□ 1.25
TMEM260-203ENST00000539559 RTL9Q8NET4 1388 aa22.83■■□□□ 1.25
TMEM260-203ENST00000539559 CICQ96RK0 1608 aaPredicted RBP22.83■■□□□ 1.25
TMEM260-203ENST00000539559 LRRC10BA6NIK2 292 aa22.83■■□□□ 1.25
TMEM260-203ENST00000539559 PP2D1A8MPX8 630 aa22.83■■□□□ 1.25
TMEM260-203ENST00000539559 CAMTA2O94983 1202 aa22.83■■□□□ 1.25
TMEM260-203ENST00000539559 RPN1P04843 607 aaKnown RBP22.83■■□□□ 1.25
TMEM260-203ENST00000539559 HERVK_113P62684 666 aa22.83■■□□□ 1.25
TMEM260-203ENST00000539559 MAGEB6P1A0A0J9YX57 407 aa22.83■■□□□ 1.24
TMEM260-203ENST00000539559 ZNF185O15231 689 aa22.83■■□□□ 1.24
TMEM260-203ENST00000539559 PARP1P09874 1014 aaKnown RBP22.83■■□□□ 1.24
TMEM260-203ENST00000539559 GYG1P46976 350 aa22.83■■□□□ 1.24
TMEM260-203ENST00000539559 TROAPQ12815 778 aa22.83■■□□□ 1.24
TMEM260-203ENST00000539559 CT47A1Q5JQC4 288 aaPredicted RBP22.83■■□□□ 1.24
TMEM260-203ENST00000539559 RASGRP4Q8TDF6 673 aa22.83■■□□□ 1.24
TMEM260-203ENST00000539559 KLK7P49862 253 aa22.82■■□□□ 1.24
TMEM260-203ENST00000539559 NLRP5P59047 1200 aa22.82■■□□□ 1.24
TMEM260-203ENST00000539559 FAM47AQ5JRC9 791 aa22.82■■□□□ 1.24
TMEM260-203ENST00000539559 RNF40O75150 1001 aa22.82■■□□□ 1.24
TMEM260-203ENST00000539559 PARP10Q53GL7 1025 aa22.82■■□□□ 1.24
TMEM260-203ENST00000539559 CCDC122Q5T0U0 273 aa22.82■■□□□ 1.24
TMEM260-203ENST00000539559 LRRC31Q6UY01 552 aa22.82■■□□□ 1.24
TMEM260-203ENST00000539559 TRAPPC11Q7Z392 1133 aa22.82■■□□□ 1.24
TMEM260-203ENST00000539559 CCDC148Q8NFR7 591 aa22.82■■□□□ 1.24
TMEM260-203ENST00000539559 BRMS1Q9HCU9 246 aa22.82■■□□□ 1.24
TMEM260-203ENST00000539559 DUSP10Q9Y6W6 482 aa22.82■■□□□ 1.24
TMEM260-203ENST00000539559 RREB1Q92766 1687 aa22.81■■□□□ 1.24
TMEM260-203ENST00000539559 BAZ2AQ9UIF9 1905 aaKnown RBP22.81■■□□□ 1.24
TMEM260-203ENST00000539559 TUBB2AQ13885 445 aa22.81■■□□□ 1.24
TMEM260-203ENST00000539559 TUBB2BQ9BVA1 445 aa22.81■■□□□ 1.24
TMEM260-203ENST00000539559 TSPYL1Q9H0U9 437 aa22.81■■□□□ 1.24
TMEM260-203ENST00000539559 RCCD1A6NED2 376 aa22.81■■□□□ 1.24
TMEM260-203ENST00000539559 GTPBP6O43824 516 aaPredicted RBP22.81■■□□□ 1.24
TMEM260-203ENST00000539559 MRPS25P82663 173 aaKnown RBP22.81■■□□□ 1.24
TMEM260-203ENST00000539559 ZNF658Q5TYW1 1059 aaPredicted RBP22.81■■□□□ 1.24
TMEM260-203ENST00000539559 WDR59Q6PJI9 974 aa22.81■■□□□ 1.24
TMEM260-203ENST00000539559 ANKRD20A12PQ8NF67 263 aa22.81■■□□□ 1.24
TMEM260-203ENST00000539559 FAM71BQ8TC56 605 aa22.81■■□□□ 1.24
TMEM260-203ENST00000539559 SYF2O95926 243 aaKnown RBP22.8■■□□□ 1.24
TMEM260-203ENST00000539559 MYBL2P10244 700 aa22.8■■□□□ 1.24
TMEM260-203ENST00000539559 AGPAT5Q9NUQ2 364 aa22.8■■□□□ 1.24
TMEM260-203ENST00000539559 GNL3LQ9NVN8 582 aaKnown RBP22.8■■□□□ 1.24
TMEM260-203ENST00000539559 TMTC3Q6ZXV5 915 aa22.8■■□□□ 1.24
TMEM260-203ENST00000539559 LACRTQ9GZZ8 138 aa22.8■■□□□ 1.24
TMEM260-203ENST00000539559 DOCK2Q92608 1830 aa22.8■■□□□ 1.24
TMEM260-203ENST00000539559 CNTNAP5Q8WYK1 1306 aa22.79■■□□□ 1.24
TMEM260-203ENST00000539559 USP14P54578 494 aa22.79■■□□□ 1.24
TMEM260-203ENST00000539559 OR8K1Q8NGG5 319 aa22.79■■□□□ 1.24
TMEM260-203ENST00000539559 GBP3Q9H0R5 595 aa22.79■■□□□ 1.24
TMEM260-203ENST00000539559 LUC7L2Q9Y383 392 aaKnown RBP22.79■■□□□ 1.24
TMEM260-203ENST00000539559 CHRNDQ07001 517 aa22.79■■□□□ 1.24
TMEM260-203ENST00000539559 MB21D1Q8N884 522 aa22.79■■□□□ 1.24
TMEM260-203ENST00000539559 GPKOWQ92917 476 aaPredicted RBP eCLIP22.79■■□□□ 1.24
TMEM260-203ENST00000539559 ZNF652Q9Y2D9 606 aa22.79■■□□□ 1.24
TMEM260-203ENST00000539559 BCORQ6W2J9 1755 aa22.78■■□□□ 1.24
TMEM260-203ENST00000539559 B4DLN1 442 aa22.78■■□□□ 1.24
TMEM260-203ENST00000539559 STAT6P42226 847 aa22.78■■□□□ 1.24
TMEM260-203ENST00000539559 RCAN1P53805 252 aa22.78■■□□□ 1.24
TMEM260-203ENST00000539559 CYP27A1Q02318 531 aa22.78■■□□□ 1.24
TMEM260-203ENST00000539559 SPAG1Q07617 926 aa22.78■■□□□ 1.24
TMEM260-203ENST00000539559 RASSF8Q8NHQ8 419 aa22.78■■□□□ 1.24
TMEM260-203ENST00000539559 MYO1AQ9UBC5 1043 aa22.78■■□□□ 1.24
TMEM260-203ENST00000539559 NIP7Q9Y221 180 aaKnown RBP eCLIP22.78■■□□□ 1.24
TMEM260-203ENST00000539559 SAR1BQ9Y6B6 198 aa22.78■■□□□ 1.24
TMEM260-203ENST00000539559 MYH14Q7Z406 1995 aaKnown RBP22.78■■□□□ 1.24
TMEM260-203ENST00000539559 NKRFO15226 690 aaKnown RBP eCLIP22.78■■□□□ 1.24
TMEM260-203ENST00000539559 WDR93Q6P2C0 686 aa22.78■■□□□ 1.24
TMEM260-203ENST00000539559 KIAA1328Q86T90 577 aa22.78■■□□□ 1.24
TMEM260-203ENST00000539559 USP17L12C9JPN9 530 aa22.77■■□□□ 1.24
TMEM260-203ENST00000539559 USP17L21D6R901 530 aa22.77■■□□□ 1.24
TMEM260-203ENST00000539559 PDE2AO00408 941 aaPredicted RBP22.77■■□□□ 1.24
TMEM260-203ENST00000539559 BMP15O95972 392 aa22.77■■□□□ 1.24
TMEM260-203ENST00000539559 IQCA1Q86XH1 822 aa22.77■■□□□ 1.24
TMEM260-203ENST00000539559 RIOK1Q9BRS2 568 aaKnown RBP22.77■■□□□ 1.24
TMEM260-203ENST00000539559 RABEP2Q9H5N1 569 aa22.77■■□□□ 1.24
TMEM260-203ENST00000539559 MTMR7Q9Y216 660 aa22.77■■□□□ 1.24
TMEM260-203ENST00000539559 FAM205AQ6ZU69 1335 aa22.77■■□□□ 1.24
TMEM260-203ENST00000539559 MACROD2A1Z1Q3 448 aa22.77■■□□□ 1.24
TMEM260-203ENST00000539559 LINC00116Q8NCU8 138 aa22.77■■□□□ 1.24
TMEM260-203ENST00000539559 HPCAL4Q9UM19 191 aa22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms