RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 EGR3Q06889 387 aa5.9□□□□□ -1.46
CD44-233ENST00000531141 PLCL1Q15111 1095 aa5.9□□□□□ -1.46
CD44-233ENST00000531141 CREG2Q8IUH2 290 aa5.9□□□□□ -1.46
CD44-233ENST00000531141 TP53INP2Q8IXH6 220 aa5.9□□□□□ -1.46
CD44-233ENST00000531141 CRACR2BQ8N4Y2 399 aaPredicted RBP5.9□□□□□ -1.46
CD44-233ENST00000531141 FIBCD1Q8N539 461 aa5.9□□□□□ -1.46
CD44-233ENST00000531141 MICAL1Q8TDZ2 1067 aa5.9□□□□□ -1.46
CD44-233ENST00000531141 DNAJC2Q99543 621 aaKnown RBP5.9□□□□□ -1.46
CD44-233ENST00000531141 CARS2Q9HA77 564 aaKnown RBP5.9□□□□□ -1.46
CD44-233ENST00000531141 SF3B6Q9Y3B4 125 aaKnown RBP5.9□□□□□ -1.46
CD44-233ENST00000531141 PCDHA11Q9Y5I1 949 aa5.9□□□□□ -1.46
CD44-233ENST00000531141 BMP8BP34820 402 aa5.89□□□□□ -1.47
CD44-233ENST00000531141 PCBP3P57721 371 aaKnown RBP5.89□□□□□ -1.47
CD44-233ENST00000531141 GRB10Q13322 594 aa5.89□□□□□ -1.47
CD44-233ENST00000531141 SLC23A3Q6PIS1 610 aa5.89□□□□□ -1.47
CD44-233ENST00000531141 CRTC3Q6UUV7 619 aa5.89□□□□□ -1.47
CD44-233ENST00000531141 FGD4Q96M96 766 aa5.89□□□□□ -1.47
CD44-233ENST00000531141 CGGBP1Q9UFW8 167 aaPredicted RBP5.89□□□□□ -1.47
CD44-233ENST00000531141 WASH4PA8MWX3 477 aa5.88□□□□□ -1.47
CD44-233ENST00000531141 H0Y8X5 98 aa5.88□□□□□ -1.47
CD44-233ENST00000531141 MEIS1O00470 390 aa5.88□□□□□ -1.47
CD44-233ENST00000531141 CTSKP43235 329 aa5.88□□□□□ -1.47
CD44-233ENST00000531141 GP2P55259 537 aaKnown RBP5.88□□□□□ -1.47
CD44-233ENST00000531141 TEKQ02763 1124 aa5.88□□□□□ -1.47
CD44-233ENST00000531141 SLC10A6Q3KNW5 377 aa5.88□□□□□ -1.47
CD44-233ENST00000531141 CWF19L1Q69YN2 538 aaKnown RBP5.88□□□□□ -1.47
CD44-233ENST00000531141 POMZP3Q6PJE2 187 aa5.88□□□□□ -1.47
CD44-233ENST00000531141 LRP10Q7Z4F1 713 aa5.88□□□□□ -1.47
CD44-233ENST00000531141 ADAT2Q7Z6V5 191 aaKnown RBP5.88□□□□□ -1.47
CD44-233ENST00000531141 LINC00116Q8NCU8 138 aa5.88□□□□□ -1.47
CD44-233ENST00000531141 ST13P5Q8NFI4 369 aaPredicted RBP5.88□□□□□ -1.47
CD44-233ENST00000531141 ADCY4Q8NFM4 1077 aa5.88□□□□□ -1.47
CD44-233ENST00000531141 PMFBP1Q8TBY8 1022 aa5.88□□□□□ -1.47
CD44-233ENST00000531141 CCDC120Q96HB5 630 aa5.88□□□□□ -1.47
CD44-233ENST00000531141 RCC1LQ96I51 464 aaKnown RBP5.88□□□□□ -1.47
CD44-233ENST00000531141 APBA2Q99767 749 aa5.88□□□□□ -1.47
CD44-233ENST00000531141 OSBPL2Q9H1P3 480 aa5.88□□□□□ -1.47
CD44-233ENST00000531141 NOL6Q9H6R4 1146 aaKnown RBP5.88□□□□□ -1.47
CD44-233ENST00000531141 ST7Q9NRC1 585 aa5.88□□□□□ -1.47
CD44-233ENST00000531141 APEX2Q9UBZ4 518 aa5.88□□□□□ -1.47
CD44-233ENST00000531141 TCFL5Q9UL49 500 aa5.88□□□□□ -1.47
CD44-233ENST00000531141 DIS3Q9Y2L1 958 aaKnown RBP5.88□□□□□ -1.47
CD44-233ENST00000531141 SUGT1Q9Y2Z0 365 aa5.88□□□□□ -1.47
CD44-233ENST00000531141 KRTAP4-8A0A0G2JLE6 195 aa5.87□□□□□ -1.47
CD44-233ENST00000531141 SSU72P8A0A1W2PR75 194 aa5.87□□□□□ -1.47
CD44-233ENST00000531141 AGRPO00253 132 aa5.87□□□□□ -1.47
CD44-233ENST00000531141 ZNF205O95201 554 aa5.87□□□□□ -1.47
CD44-233ENST00000531141 SYPP08247 313 aa5.87□□□□□ -1.47
CD44-233ENST00000531141 RASGRF1Q13972 1273 aa5.87□□□□□ -1.47
CD44-233ENST00000531141 RASA3Q14644 834 aa5.87□□□□□ -1.47
CD44-233ENST00000531141 NBPF11Q86T75 865 aa5.87□□□□□ -1.47
CD44-233ENST00000531141 ARHGEF39Q8N4T4 335 aa5.87□□□□□ -1.47
CD44-233ENST00000531141 ZNF513Q8N8E2 541 aaPredicted RBP5.87□□□□□ -1.47
CD44-233ENST00000531141 BRF1Q92994 677 aa5.87□□□□□ -1.47
CD44-233ENST00000531141 MKL1Q969V6 931 aa5.87□□□□□ -1.47
CD44-233ENST00000531141 ZNF669Q96BR6 464 aaPredicted RBP5.87□□□□□ -1.47
CD44-233ENST00000531141 SYTL4Q96C24 671 aaPredicted RBP5.87□□□□□ -1.47
CD44-233ENST00000531141 ZDHHC15Q96MV8 337 aa5.87□□□□□ -1.47
CD44-233ENST00000531141 ALPK1Q96QP1 1244 aa5.87□□□□□ -1.47
CD44-233ENST00000531141 FOXP3Q9BZS1 431 aa5.87□□□□□ -1.47
CD44-233ENST00000531141 USP35Q9P2H5 1018 aa5.87□□□□□ -1.47
CD44-233ENST00000531141 MINPP1Q9UNW1 487 aa5.87□□□□□ -1.47
CD44-233ENST00000531141 NOP56O00567 594 aaKnown RBP5.86□□□□□ -1.47
CD44-233ENST00000531141 POU4F1Q01851 419 aa5.86□□□□□ -1.47
CD44-233ENST00000531141 KRTAP19-1Q8IUB9 90 aa5.86□□□□□ -1.47
CD44-233ENST00000531141 ABI1Q8IZP0 508 aa5.86□□□□□ -1.47
CD44-233ENST00000531141 PI4K2BQ8TCG2 481 aa5.86□□□□□ -1.47
CD44-233ENST00000531141 DEPDC7Q96QD5 511 aa5.86□□□□□ -1.47
CD44-233ENST00000531141 CCDC113Q9H0I3 377 aa5.86□□□□□ -1.47
CD44-233ENST00000531141 SLAMF8Q9P0V8 285 aa5.86□□□□□ -1.47
CD44-233ENST00000531141 TMEM59LQ9UK28 342 aa5.86□□□□□ -1.47
CD44-233ENST00000531141 IQCA1LA6NCM1 817 aa5.85□□□□□ -1.47
CD44-233ENST00000531141 PDPK1O15530 556 aa5.85□□□□□ -1.47
CD44-233ENST00000531141 AMPD2Q01433 879 aa5.85□□□□□ -1.47
CD44-233ENST00000531141 DUSP4Q13115 394 aa5.85□□□□□ -1.47
CD44-233ENST00000531141 PPP2R5DQ14738 602 aa5.85□□□□□ -1.47
CD44-233ENST00000531141 NFE2L2Q16236 605 aa5.85□□□□□ -1.47
CD44-233ENST00000531141 ZNF792Q3KQV3 632 aa5.85□□□□□ -1.47
CD44-233ENST00000531141 SV2CQ496J9 727 aa5.85□□□□□ -1.47
CD44-233ENST00000531141 ZNF227Q86WZ6 799 aa5.85□□□□□ -1.47
CD44-233ENST00000531141 TRIM59Q8IWR1 403 aa5.85□□□□□ -1.47
CD44-233ENST00000531141 USHBP1Q8N6Y0 703 aa5.85□□□□□ -1.47
CD44-233ENST00000531141 BVESQ8NE79 360 aa5.85□□□□□ -1.47
CD44-233ENST00000531141 PPP1R14AQ96A00 147 aa5.85□□□□□ -1.47
CD44-233ENST00000531141 FCRL2Q96LA5 508 aaPredicted RBP5.85□□□□□ -1.47
CD44-233ENST00000531141 MBNL3Q9NUK0 354 aaKnown RBP5.85□□□□□ -1.47
CD44-233ENST00000531141 SNTG2Q9NY99 539 aa5.85□□□□□ -1.47
CD44-233ENST00000531141 ADAMTS6Q9UKP5 1117 aa5.85□□□□□ -1.47
CD44-233ENST00000531141 AKT3Q9Y243 479 aa5.85□□□□□ -1.47
CD44-233ENST00000531141 EMC9Q9Y3B6 208 aa5.85□□□□□ -1.47
CD44-233ENST00000531141 TMEM82A0PJX8 343 aa5.84□□□□□ -1.47
CD44-233ENST00000531141 CCDC85CA6NKD9 419 aa5.84□□□□□ -1.47
CD44-233ENST00000531141 FKTNO75072 461 aa5.84□□□□□ -1.47
CD44-233ENST00000531141 CD3EP07766 207 aa5.84□□□□□ -1.47
CD44-233ENST00000531141 VAV1P15498 845 aa5.84□□□□□ -1.47
CD44-233ENST00000531141 IFRD2Q12894 506 aaPredicted RBP5.84□□□□□ -1.47
CD44-233ENST00000531141 SGSM3Q96HU1 749 aa5.84□□□□□ -1.47
CD44-233ENST00000531141 MRGPRX3Q96LB0 322 aa5.84□□□□□ -1.47
CD44-233ENST00000531141 SRPK1Q96SB4 655 aaKnown RBP5.84□□□□□ -1.47
CD44-233ENST00000531141 LNPKQ9C0E8 428 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms