RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 WHRNQ9P202 907 aa7.53□□□□□ -1.2
CD44-223ENST00000526553 TMEM82A0PJX8 343 aa7.52□□□□□ -1.21
CD44-223ENST00000526553 MEIS1O00470 390 aa7.52□□□□□ -1.21
CD44-223ENST00000526553 RAC2P15153 192 aa7.52□□□□□ -1.21
CD44-223ENST00000526553 HK2P52789 917 aa7.52□□□□□ -1.21
CD44-223ENST00000526553 NCAPHQ15003 741 aa7.52□□□□□ -1.21
CD44-223ENST00000526553 HEATR6Q6AI08 1181 aaKnown RBP7.52□□□□□ -1.21
CD44-223ENST00000526553 CRTC3Q6UUV7 619 aa7.52□□□□□ -1.21
CD44-223ENST00000526553 ZSWIM9Q86XI8 627 aa7.52□□□□□ -1.21
CD44-223ENST00000526553 LINC01599Q8WXQ3 324 aa7.52□□□□□ -1.21
CD44-223ENST00000526553 G6PC3Q9BUM1 346 aa7.52□□□□□ -1.21
CD44-223ENST00000526553 PAX4O43316 350 aa7.51□□□□□ -1.21
CD44-223ENST00000526553 EPHX1P07099 455 aa7.51□□□□□ -1.21
CD44-223ENST00000526553 ZNF143P52747 638 aaPredicted RBP7.51□□□□□ -1.21
CD44-223ENST00000526553 CHRNEQ04844 493 aa7.51□□□□□ -1.21
CD44-223ENST00000526553 NR0B2Q15466 257 aa7.51□□□□□ -1.21
CD44-223ENST00000526553 CWF19L1Q69YN2 538 aaKnown RBP7.51□□□□□ -1.21
CD44-223ENST00000526553 KIAA1211LQ6NV74 962 aa7.51□□□□□ -1.21
CD44-223ENST00000526553 WAPLQ7Z5K2 1190 aa7.51□□□□□ -1.21
CD44-223ENST00000526553 FIBCD1Q8N539 461 aa7.51□□□□□ -1.21
CD44-223ENST00000526553 OXR1Q8N573 874 aa7.51□□□□□ -1.21
CD44-223ENST00000526553 ANKS4BQ8N8V4 417 aa7.51□□□□□ -1.21
CD44-223ENST00000526553 FAM168AQ92567 244 aa7.51□□□□□ -1.21
CD44-223ENST00000526553 BRF1Q92994 677 aa7.51□□□□□ -1.21
CD44-223ENST00000526553 KIRREL1Q96J84 757 aa7.51□□□□□ -1.21
CD44-223ENST00000526553 SF3B6Q9Y3B4 125 aaKnown RBP7.51□□□□□ -1.21
CD44-223ENST00000526553 FITM1A5D6W6 292 aa7.5□□□□□ -1.21
CD44-223ENST00000526553 H0Y8X5 98 aa7.5□□□□□ -1.21
CD44-223ENST00000526553 NAT2P11245 290 aa7.5□□□□□ -1.21
CD44-223ENST00000526553 VAV1P15498 845 aa7.5□□□□□ -1.21
CD44-223ENST00000526553 RPL10P27635 214 aaKnown RBP7.5□□□□□ -1.21
CD44-223ENST00000526553 LILRA2Q8N149 483 aa7.5□□□□□ -1.21
CD44-223ENST00000526553 FCRL2Q96LA5 508 aaPredicted RBP7.5□□□□□ -1.21
CD44-223ENST00000526553 SP110Q9HB58 689 aa7.5□□□□□ -1.21
CD44-223ENST00000526553 SUSD2Q9UGT4 822 aa7.5□□□□□ -1.21
CD44-223ENST00000526553 DIS3Q9Y2L1 958 aaKnown RBP7.5□□□□□ -1.21
CD44-223ENST00000526553 CARMIL2Q6F5E8 1435 aa7.5□□□□□ -1.21
CD44-223ENST00000526553 ANKRD34BA5PLL1 514 aa7.49□□□□□ -1.21
CD44-223ENST00000526553 FKTNO75072 461 aa7.49□□□□□ -1.21
CD44-223ENST00000526553 PPM1BO75688 479 aa7.49□□□□□ -1.21
CD44-223ENST00000526553 KIR2DL1P43626 348 aaPredicted RBP7.49□□□□□ -1.21
CD44-223ENST00000526553 KIR2DL2P43627 348 aaPredicted RBP7.49□□□□□ -1.21
CD44-223ENST00000526553 ERVFC1P60507 584 aa7.49□□□□□ -1.21
CD44-223ENST00000526553 KCNMB1Q16558 191 aa7.49□□□□□ -1.21
CD44-223ENST00000526553 FYB2Q5VWT5 728 aa7.49□□□□□ -1.21
CD44-223ENST00000526553 SPPL2CQ8IUH8 684 aa7.49□□□□□ -1.21
CD44-223ENST00000526553 MYLIPQ8WY64 445 aa7.49□□□□□ -1.21
CD44-223ENST00000526553 MAP6Q96JE9 813 aa7.49□□□□□ -1.21
CD44-223ENST00000526553 NOL6Q9H6R4 1146 aaKnown RBP7.49□□□□□ -1.21
CD44-223ENST00000526553 EBF1Q9UH73 591 aa7.49□□□□□ -1.21
CD44-223ENST00000526553 GLI1P08151 1106 aa7.48□□□□□ -1.21
CD44-223ENST00000526553 FXNQ16595 210 aa7.48□□□□□ -1.21
CD44-223ENST00000526553 RTP2Q5QGT7 225 aa7.48□□□□□ -1.21
CD44-223ENST00000526553 LARP1BQ659C4 914 aaKnown RBP7.48□□□□□ -1.21
CD44-223ENST00000526553 C6orf15Q6UXA7 325 aaPredicted RBP7.48□□□□□ -1.21
CD44-223ENST00000526553 ABHD4Q8TB40 342 aa7.48□□□□□ -1.21
CD44-223ENST00000526553 RCC1LQ96I51 464 aaKnown RBP7.48□□□□□ -1.21
CD44-223ENST00000526553 FGD4Q96M96 766 aa7.48□□□□□ -1.21
CD44-223ENST00000526553 FMNL2Q96PY5 1086 aa7.48□□□□□ -1.21
CD44-223ENST00000526553 SLC12A9Q9BXP2 914 aa7.48□□□□□ -1.21
CD44-223ENST00000526553 ZMYM5Q9UJ78 669 aa7.48□□□□□ -1.21
CD44-223ENST00000526553 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.48□□□□□ -1.21
CD44-223ENST00000526553 NOP2P46087 812 aaKnown RBP7.47□□□□□ -1.21
CD44-223ENST00000526553 POU4F1Q01851 419 aa7.47□□□□□ -1.21
CD44-223ENST00000526553 ANKS3Q6ZW76 656 aa7.47□□□□□ -1.21
CD44-223ENST00000526553 ADAT2Q7Z6V5 191 aaKnown RBP7.47□□□□□ -1.21
CD44-223ENST00000526553 FAM178BQ8IXR5 827 aa7.47□□□□□ -1.21
CD44-223ENST00000526553 ZNF513Q8N8E2 541 aaPredicted RBP7.47□□□□□ -1.21
CD44-223ENST00000526553 ADCY4Q8NFM4 1077 aa7.47□□□□□ -1.21
CD44-223ENST00000526553 ERVK13-1Q9NX77 482 aa7.47□□□□□ -1.21
CD44-223ENST00000526553 TNFRSF10DQ9UBN6 386 aa7.47□□□□□ -1.21
CD44-223ENST00000526553 CGGBP1Q9UFW8 167 aaPredicted RBP7.47□□□□□ -1.21
CD44-223ENST00000526553 R3HCC1Q9Y3T6 440 aaKnown RBP7.47□□□□□ -1.21
CD44-223ENST00000526553 RNF114Q9Y508 228 aa7.47□□□□□ -1.21
CD44-223ENST00000526553 GRB10Q13322 594 aa7.46□□□□□ -1.22
CD44-223ENST00000526553 TMEM67Q5HYA8 995 aa7.46□□□□□ -1.22
CD44-223ENST00000526553 ZPBP2Q6X784 338 aa7.46□□□□□ -1.22
CD44-223ENST00000526553 ARHGEF39Q8N4T4 335 aa7.46□□□□□ -1.22
CD44-223ENST00000526553 HNRNPLLQ8WVV9 542 aaKnown RBP7.46□□□□□ -1.22
CD44-223ENST00000526553 HHIPL1Q96JK4 782 aa7.46□□□□□ -1.22
CD44-223ENST00000526553 ZDHHC15Q96MV8 337 aa7.46□□□□□ -1.22
CD44-223ENST00000526553 APBA2Q99767 749 aa7.46□□□□□ -1.22
CD44-223ENST00000526553 CDADC1Q9BWV3 514 aa7.46□□□□□ -1.22
CD44-223ENST00000526553 TANGO6Q9C0B7 1094 aa7.46□□□□□ -1.22
CD44-223ENST00000526553 AP5S1Q9NUS5 200 aa7.46□□□□□ -1.22
CD44-223ENST00000526553 B2RBV5 119 aa7.45□□□□□ -1.22
CD44-223ENST00000526553 KLF4O43474 513 aa7.45□□□□□ -1.22
CD44-223ENST00000526553 USP2O75604 605 aaPredicted RBP7.45□□□□□ -1.22
CD44-223ENST00000526553 PPP2R5DQ14738 602 aa7.45□□□□□ -1.22
CD44-223ENST00000526553 SNX17Q15036 470 aa7.45□□□□□ -1.22
CD44-223ENST00000526553 FAM53CQ9NYF3 392 aa7.45□□□□□ -1.22
CD44-223ENST00000526553 APEX2Q9UBZ4 518 aa7.45□□□□□ -1.22
CD44-223ENST00000526553 SUGT1Q9Y2Z0 365 aa7.45□□□□□ -1.22
CD44-223ENST00000526553 ZNF503-AS2A6NEH8 195 aa7.44□□□□□ -1.22
CD44-223ENST00000526553 FADS2P1A8MWK0 482 aa7.44□□□□□ -1.22
CD44-223ENST00000526553 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.44□□□□□ -1.22
CD44-223ENST00000526553 FGF10O15520 208 aaPredicted RBP7.44□□□□□ -1.22
CD44-223ENST00000526553 NRDCO43847 1150 aa7.44□□□□□ -1.22
CD44-223ENST00000526553 DDAH1O94760 285 aa7.44□□□□□ -1.22
CD44-223ENST00000526553 STK10O94804 968 aaKnown RBP7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms