RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 ZMYM5Q9UJ78 669 aa5.5□□□□□ -1.53
CPSF3-205ENST00000489629 SSU72P8A0A1W2PR75 194 aa5.49□□□□□ -1.53
CPSF3-205ENST00000489629 SHOXO15266 292 aa5.49□□□□□ -1.53
CPSF3-205ENST00000489629 RACK1P63244 317 aaKnown RBP5.49□□□□□ -1.53
CPSF3-205ENST00000489629 DLG4P78352 724 aa5.49□□□□□ -1.53
CPSF3-205ENST00000489629 AUHQ13825 339 aaKnown RBP5.49□□□□□ -1.53
CPSF3-205ENST00000489629 ZNF605Q86T29 641 aa5.49□□□□□ -1.53
CPSF3-205ENST00000489629 MKRN2Q9H000 416 aaKnown RBP5.49□□□□□ -1.53
CPSF3-205ENST00000489629 GCM1Q9NP62 436 aa5.49□□□□□ -1.53
CPSF3-205ENST00000489629 GFOD1Q9NXC2 390 aa5.49□□□□□ -1.53
CPSF3-205ENST00000489629 SUCOQ9UBS9 1254 aaKnown RBP5.49□□□□□ -1.53
CPSF3-205ENST00000489629 PCDHB12Q9Y5F1 795 aa5.49□□□□□ -1.53
CPSF3-205ENST00000489629 TEX51A0A1B0GUA7 166 aa5.48□□□□□ -1.53
CPSF3-205ENST00000489629 FADS2P1A8MWK0 482 aa5.48□□□□□ -1.53
CPSF3-205ENST00000489629 C9IYK1 514 aa5.48□□□□□ -1.53
CPSF3-205ENST00000489629 FKTNO75072 461 aa5.48□□□□□ -1.53
CPSF3-205ENST00000489629 SEMA7AO75326 666 aa5.48□□□□□ -1.53
CPSF3-205ENST00000489629 ZNF205O95201 554 aa5.48□□□□□ -1.53
CPSF3-205ENST00000489629 ZSCAN22P10073 491 aaPredicted RBP5.48□□□□□ -1.53
CPSF3-205ENST00000489629 IMPDH2P12268 514 aa5.48□□□□□ -1.53
CPSF3-205ENST00000489629 BMP8BP34820 402 aa5.48□□□□□ -1.53
CPSF3-205ENST00000489629 MFAP1P55081 439 aaKnown RBP5.48□□□□□ -1.53
CPSF3-205ENST00000489629 SIRT2Q8IXJ6 389 aa5.48□□□□□ -1.53
CPSF3-205ENST00000489629 RBBP8NLQ8NC74 664 aaPredicted RBP5.48□□□□□ -1.53
CPSF3-205ENST00000489629 FCRL2Q96LA5 508 aaPredicted RBP5.48□□□□□ -1.53
CPSF3-205ENST00000489629 PLCD4Q9BRC7 762 aa5.48□□□□□ -1.53
CPSF3-205ENST00000489629 TNFRSF10DQ9UBN6 386 aa5.48□□□□□ -1.53
CPSF3-205ENST00000489629 PCDHGB7Q9Y5F8 929 aa5.48□□□□□ -1.53
CPSF3-205ENST00000489629 ZBTB7CA1YPR0 619 aa5.47□□□□□ -1.53
CPSF3-205ENST00000489629 KRTAP9-7A8MTY7 169 aa5.47□□□□□ -1.53
CPSF3-205ENST00000489629 RECKO95980 971 aa5.47□□□□□ -1.53
CPSF3-205ENST00000489629 PNLIPP16233 465 aa5.47□□□□□ -1.53
CPSF3-205ENST00000489629 VAMP1P23763 118 aa5.47□□□□□ -1.53
CPSF3-205ENST00000489629 PDE6BP35913 854 aa5.47□□□□□ -1.53
CPSF3-205ENST00000489629 LINC00310P59036 64 aa5.47□□□□□ -1.53
CPSF3-205ENST00000489629 SLC14A2Q15849 920 aa5.47□□□□□ -1.53
CPSF3-205ENST00000489629 CEP128Q6ZU80 1094 aa5.47□□□□□ -1.53
CPSF3-205ENST00000489629 PPFIBP1Q86W92 1011 aa5.47□□□□□ -1.53
CPSF3-205ENST00000489629 C7orf61Q8IZ16 206 aa5.47□□□□□ -1.53
CPSF3-205ENST00000489629 RNF34Q969K3 372 aa5.47□□□□□ -1.53
CPSF3-205ENST00000489629 DHRS1Q96LJ7 313 aa5.47□□□□□ -1.53
CPSF3-205ENST00000489629 ERVK13-1Q9NX77 482 aa5.47□□□□□ -1.53
CPSF3-205ENST00000489629 DDX41Q9UJV9 622 aaKnown RBP5.47□□□□□ -1.53
CPSF3-205ENST00000489629 FBXL21Q9UKT6 434 aa5.47□□□□□ -1.53
CPSF3-205ENST00000489629 OR14I1A6ND48 311 aa5.46□□□□□ -1.54
CPSF3-205ENST00000489629 FAM86C2PA6NEL3 165 aa5.46□□□□□ -1.54
CPSF3-205ENST00000489629 HRKO00198 91 aa5.46□□□□□ -1.54
CPSF3-205ENST00000489629 MEIS1O00470 390 aa5.46□□□□□ -1.54
CPSF3-205ENST00000489629 VAV1P15498 845 aa5.46□□□□□ -1.54
CPSF3-205ENST00000489629 PMS1P54277 932 aaKnown RBP5.46□□□□□ -1.54
CPSF3-205ENST00000489629 RTP1P59025 263 aa5.46□□□□□ -1.54
CPSF3-205ENST00000489629 HSF5Q4G112 596 aaPredicted RBP5.46□□□□□ -1.54
CPSF3-205ENST00000489629 ANKRD39Q53RE8 183 aa5.46□□□□□ -1.54
CPSF3-205ENST00000489629 RTP2Q5QGT7 225 aa5.46□□□□□ -1.54
CPSF3-205ENST00000489629 TMEM52Q8NDY8 209 aa5.46□□□□□ -1.54
CPSF3-205ENST00000489629 TM9SF2Q99805 663 aa5.46□□□□□ -1.54
CPSF3-205ENST00000489629 SGPP1Q9BX95 441 aa5.46□□□□□ -1.54
CPSF3-205ENST00000489629 ENDOUP21128 410 aaKnown RBP5.45□□□□□ -1.54
CPSF3-205ENST00000489629 ERVFRD-1P60508 538 aa5.45□□□□□ -1.54
CPSF3-205ENST00000489629 YBX1P67809 324 aaKnown RBP5.45□□□□□ -1.54
CPSF3-205ENST00000489629 KIR3DS1Q14943 382 aa5.45□□□□□ -1.54
CPSF3-205ENST00000489629 ZYXQ15942 572 aaKnown RBP5.45□□□□□ -1.54
CPSF3-205ENST00000489629 ADGRF1Q5T601 910 aa5.45□□□□□ -1.54
CPSF3-205ENST00000489629 CIAPIN1Q6FI81 312 aa5.45□□□□□ -1.54
CPSF3-205ENST00000489629 CRTC3Q6UUV7 619 aa5.45□□□□□ -1.54
CPSF3-205ENST00000489629 SLCO6A1Q86UG4 719 aa5.45□□□□□ -1.54
CPSF3-205ENST00000489629 METTL16Q86W50 562 aaKnown RBP5.45□□□□□ -1.54
CPSF3-205ENST00000489629 SMARCC1Q92922 1105 aaPredicted RBP5.45□□□□□ -1.54
CPSF3-205ENST00000489629 FERD3LQ96RJ6 166 aa5.45□□□□□ -1.54
CPSF3-205ENST00000489629 MBD1Q9UIS9 605 aaPredicted RBP5.45□□□□□ -1.54
CPSF3-205ENST00000489629 PPT2Q9UMR5 302 aa5.45□□□□□ -1.54
CPSF3-205ENST00000489629 GPR55Q9Y2T6 319 aaPredicted RBP5.45□□□□□ -1.54
CPSF3-205ENST00000489629 WTIPA6NIX2 430 aaPredicted RBP5.44□□□□□ -1.54
CPSF3-205ENST00000489629 NUAK1O60285 661 aa5.44□□□□□ -1.54
CPSF3-205ENST00000489629 GSNP06396 782 aa5.44□□□□□ -1.54
CPSF3-205ENST00000489629 AXDND1Q5T1B0 1012 aaPredicted RBP5.44□□□□□ -1.54
CPSF3-205ENST00000489629 TDRD10Q5VZ19 366 aaKnown RBP5.44□□□□□ -1.54
CPSF3-205ENST00000489629 GALNT18Q6P9A2 607 aa5.44□□□□□ -1.54
CPSF3-205ENST00000489629 UNC5AQ6ZN44 842 aa5.44□□□□□ -1.54
CPSF3-205ENST00000489629 RUFY4Q6ZNE9 571 aa5.44□□□□□ -1.54
CPSF3-205ENST00000489629 CCDC144CPQ8IYA2 1237 aa5.44□□□□□ -1.54
CPSF3-205ENST00000489629 AP5S1Q9NUS5 200 aa5.44□□□□□ -1.54
CPSF3-205ENST00000489629 ACSL6Q9UKU0 697 aa5.44□□□□□ -1.54
CPSF3-205ENST00000489629 A0A1W2PQ45 241 aaPredicted RBP5.43□□□□□ -1.54
CPSF3-205ENST00000489629 A0A1W2PQY0 241 aa5.43□□□□□ -1.54
CPSF3-205ENST00000489629 SCAMP3O14828 347 aaKnown RBP5.43□□□□□ -1.54
CPSF3-205ENST00000489629 SDHBP21912 280 aa5.43□□□□□ -1.54
CPSF3-205ENST00000489629 GUCY2CP25092 1073 aa5.43□□□□□ -1.54
CPSF3-205ENST00000489629 VIPR1P32241 457 aa5.43□□□□□ -1.54
CPSF3-205ENST00000489629 ZNF445P59923 1031 aa5.43□□□□□ -1.54
CPSF3-205ENST00000489629 SRSF3P84103 164 aaKnown RBP5.43□□□□□ -1.54
CPSF3-205ENST00000489629 DCAF15Q66K64 600 aa5.43□□□□□ -1.54
CPSF3-205ENST00000489629 TMEM132EQ6IEE7 984 aa5.43□□□□□ -1.54
CPSF3-205ENST00000489629 TTLL10Q6ZVT0 673 aa5.43□□□□□ -1.54
CPSF3-205ENST00000489629 LSRQ86X29 649 aaPredicted RBP5.43□□□□□ -1.54
CPSF3-205ENST00000489629 CDADC1Q9BWV3 514 aa5.43□□□□□ -1.54
CPSF3-205ENST00000489629 SLC12A9Q9BXP2 914 aa5.43□□□□□ -1.54
CPSF3-205ENST00000489629 SRRTQ9BXP5 876 aaKnown RBP5.43□□□□□ -1.54
CPSF3-205ENST00000489629 IRF2BPLQ9H1B7 796 aa5.43□□□□□ -1.54
CPSF3-205ENST00000489629 CNTD2Q9H8S5 307 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms