RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 APBA2Q99767 749 aa8.21□□□□□ -1.1
USP48-209ENST00000487880 PAK6Q9NQU5 681 aaPredicted RBP8.21□□□□□ -1.1
USP48-209ENST00000487880 LMCD1Q9NZU5 365 aa8.21□□□□□ -1.1
USP48-209ENST00000487880 DUSP13Q9UII6 198 aa8.21□□□□□ -1.1
USP48-209ENST00000487880 PDPK1O15530 556 aa8.2□□□□□ -1.1
USP48-209ENST00000487880 IKZF1Q13422 519 aa8.2□□□□□ -1.1
USP48-209ENST00000487880 CCDC144BQ3MJ40 725 aa8.2□□□□□ -1.1
USP48-209ENST00000487880 NOL9Q5SY16 702 aaKnown RBP8.2□□□□□ -1.1
USP48-209ENST00000487880 ADCY4Q8NFM4 1077 aa8.2□□□□□ -1.1
USP48-209ENST00000487880 CGGBP1Q9UFW8 167 aaPredicted RBP8.2□□□□□ -1.1
USP48-209ENST00000487880 ANGEL1Q9UNK9 670 aaKnown RBP8.2□□□□□ -1.1
USP48-209ENST00000487880 DIS3Q9Y2L1 958 aaKnown RBP8.2□□□□□ -1.1
USP48-209ENST00000487880 FAM221BA6H8Z2 402 aa8.19□□□□□ -1.1
USP48-209ENST00000487880 GSNP06396 782 aa8.19□□□□□ -1.1
USP48-209ENST00000487880 BMP8BP34820 402 aa8.19□□□□□ -1.1
USP48-209ENST00000487880 ANGEL2Q5VTE6 544 aaKnown RBP8.19□□□□□ -1.1
USP48-209ENST00000487880 CRTC3Q6UUV7 619 aa8.19□□□□□ -1.1
USP48-209ENST00000487880 ADAT2Q7Z6V5 191 aaKnown RBP8.19□□□□□ -1.1
USP48-209ENST00000487880 USHBP1Q8N6Y0 703 aa8.19□□□□□ -1.1
USP48-209ENST00000487880 LINC00116Q8NCU8 138 aa8.19□□□□□ -1.1
USP48-209ENST00000487880 FLCNQ8NFG4 579 aa8.19□□□□□ -1.1
USP48-209ENST00000487880 DSCC1Q9BVC3 393 aa8.19□□□□□ -1.1
USP48-209ENST00000487880 KRTAP4-8Q9BYQ9 185 aa8.19□□□□□ -1.1
USP48-209ENST00000487880 NOL6Q9H6R4 1146 aaKnown RBP8.19□□□□□ -1.1
USP48-209ENST00000487880 ZNF281Q9Y2X9 895 aa8.19□□□□□ -1.1
USP48-209ENST00000487880 SF3B6Q9Y3B4 125 aaKnown RBP8.19□□□□□ -1.1
USP48-209ENST00000487880 EMC9Q9Y3B6 208 aa8.19□□□□□ -1.1
USP48-209ENST00000487880 PCDHA11Q9Y5I1 949 aa8.19□□□□□ -1.1
USP48-209ENST00000487880 H0Y8X5 98 aa8.18□□□□□ -1.1
USP48-209ENST00000487880 MEIS1O00470 390 aa8.18□□□□□ -1.1
USP48-209ENST00000487880 WNT11O96014 354 aa8.18□□□□□ -1.1
USP48-209ENST00000487880 CAPNS1P04632 268 aa8.18□□□□□ -1.1
USP48-209ENST00000487880 FUT4P22083 530 aa8.18□□□□□ -1.1
USP48-209ENST00000487880 RNF111Q6ZNA4 994 aa8.18□□□□□ -1.1
USP48-209ENST00000487880 CREG2Q8IUH2 290 aa8.18□□□□□ -1.1
USP48-209ENST00000487880 BVESQ8NE79 360 aa8.18□□□□□ -1.1
USP48-209ENST00000487880 MRGPRX3Q96LB0 322 aa8.18□□□□□ -1.1
USP48-209ENST00000487880 ZSWIM4Q9H7M6 989 aa8.18□□□□□ -1.1
USP48-209ENST00000487880 CDK11AQ9UQ88 783 aaPredicted RBP8.18□□□□□ -1.1
USP48-209ENST00000487880 CCDC85CA6NKD9 419 aa8.17□□□□□ -1.1
USP48-209ENST00000487880 ZNF205O95201 554 aa8.17□□□□□ -1.1
USP48-209ENST00000487880 LTKP29376 864 aa8.17□□□□□ -1.1
USP48-209ENST00000487880 TEKQ02763 1124 aa8.17□□□□□ -1.1
USP48-209ENST00000487880 GRB10Q13322 594 aa8.17□□□□□ -1.1
USP48-209ENST00000487880 BMS1Q14692 1282 aaKnown RBP8.17□□□□□ -1.1
USP48-209ENST00000487880 NFE2L2Q16236 605 aa8.17□□□□□ -1.1
USP48-209ENST00000487880 ZNF227Q86WZ6 799 aa8.17□□□□□ -1.1
USP48-209ENST00000487880 SRPK1Q96SB4 655 aaKnown RBP8.17□□□□□ -1.1
USP48-209ENST00000487880 CARS2Q9HA77 564 aaKnown RBP8.17□□□□□ -1.1
USP48-209ENST00000487880 SCO2A0A1W2PP80 73 aa8.16□□□□□ -1.1
USP48-209ENST00000487880 ITGAVP06756 1048 aa8.16□□□□□ -1.1
USP48-209ENST00000487880 VAV1P15498 845 aa8.16□□□□□ -1.1
USP48-209ENST00000487880 PCBP3P57721 371 aaKnown RBP8.16□□□□□ -1.1
USP48-209ENST00000487880 ZP2Q05996 745 aa8.16□□□□□ -1.1
USP48-209ENST00000487880 EGR3Q06889 387 aa8.16□□□□□ -1.1
USP48-209ENST00000487880 SV2CQ496J9 727 aa8.16□□□□□ -1.1
USP48-209ENST00000487880 TRIM59Q8IWR1 403 aa8.16□□□□□ -1.1
USP48-209ENST00000487880 SGSM3Q96HU1 749 aa8.16□□□□□ -1.1
USP48-209ENST00000487880 ZDHHC15Q96MV8 337 aa8.16□□□□□ -1.1
USP48-209ENST00000487880 LGR4Q9BXB1 951 aa8.16□□□□□ -1.1
USP48-209ENST00000487880 FOXP3Q9BZS1 431 aa8.16□□□□□ -1.1
USP48-209ENST00000487880 PIF1Q9H611 641 aa8.16□□□□□ -1.1
USP48-209ENST00000487880 ZMYM5Q9UJ78 669 aa8.16□□□□□ -1.1
USP48-209ENST00000487880 TCFL5Q9UL49 500 aa8.16□□□□□ -1.1
USP48-209ENST00000487880 AKT3Q9Y243 479 aa8.16□□□□□ -1.1
USP48-209ENST00000487880 SUGT1Q9Y2Z0 365 aa8.16□□□□□ -1.1
USP48-209ENST00000487880 TMEM82A0PJX8 343 aa8.15□□□□□ -1.1
USP48-209ENST00000487880 SYPP08247 313 aa8.15□□□□□ -1.1
USP48-209ENST00000487880 PPP2R5DQ14738 602 aa8.15□□□□□ -1.1
USP48-209ENST00000487880 MTERF2Q49AM1 385 aa8.15□□□□□ -1.1
USP48-209ENST00000487880 POMZP3Q6PJE2 187 aa8.15□□□□□ -1.1
USP48-209ENST00000487880 SPATC1Q76KD6 591 aa8.15□□□□□ -1.1
USP48-209ENST00000487880 CRACR2BQ8N4Y2 399 aaPredicted RBP8.15□□□□□ -1.1
USP48-209ENST00000487880 LRRN4CLQ8ND94 238 aa8.15□□□□□ -1.1
USP48-209ENST00000487880 SLC12A9Q9BXP2 914 aa8.15□□□□□ -1.1
USP48-209ENST00000487880 ZFP64Q9NPA5 681 aa8.15□□□□□ -1.1
USP48-209ENST00000487880 A0A1W2PQU0 124 aa8.14□□□□□ -1.11
USP48-209ENST00000487880 IQCA1LA6NCM1 817 aa8.14□□□□□ -1.11
USP48-209ENST00000487880 TBX1O43435 398 aa8.14□□□□□ -1.11
USP48-209ENST00000487880 RTP2Q5QGT7 225 aa8.14□□□□□ -1.11
USP48-209ENST00000487880 CWF19L1Q69YN2 538 aaKnown RBP8.14□□□□□ -1.11
USP48-209ENST00000487880 AGBL5Q8NDL9 886 aa8.14□□□□□ -1.11
USP48-209ENST00000487880 MCMBPQ9BTE3 642 aa8.14□□□□□ -1.11
USP48-209ENST00000487880 AGRPO00253 132 aa8.13□□□□□ -1.11
USP48-209ENST00000487880 NOP56O00567 594 aaKnown RBP8.13□□□□□ -1.11
USP48-209ENST00000487880 POU4F1Q01851 419 aa8.13□□□□□ -1.11
USP48-209ENST00000487880 SLC23A3Q6PIS1 610 aa8.13□□□□□ -1.11
USP48-209ENST00000487880 DNAJC7Q99615 494 aa8.13□□□□□ -1.11
USP48-209ENST00000487880 ADAMTS6Q9UKP5 1117 aa8.13□□□□□ -1.11
USP48-209ENST00000487880 ADCY3O60266 1144 aa8.12□□□□□ -1.11
USP48-209ENST00000487880 DIAPH1O60610 1272 aaKnown RBP8.12□□□□□ -1.11
USP48-209ENST00000487880 KCNH1O95259 989 aa8.12□□□□□ -1.11
USP48-209ENST00000487880 ENDOUP21128 410 aaKnown RBP8.12□□□□□ -1.11
USP48-209ENST00000487880 AMPD2Q01433 879 aa8.12□□□□□ -1.11
USP48-209ENST00000487880 IFRD2Q12894 506 aaPredicted RBP8.12□□□□□ -1.11
USP48-209ENST00000487880 GTF2IRD2BQ6EKJ0 949 aa8.12□□□□□ -1.11
USP48-209ENST00000487880 GTF2IRD2Q86UP8 949 aa8.12□□□□□ -1.11
USP48-209ENST00000487880 TP53INP2Q8IXH6 220 aa8.12□□□□□ -1.11
USP48-209ENST00000487880 LRRC47Q8N1G4 583 aaKnown RBP8.12□□□□□ -1.11
USP48-209ENST00000487880 JMYQ8N9B5 988 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms