RNA–Protein interactions for RNA: ENST00000486806.1

MCF2L-227, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 361 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-227ENST00000486806 PPP1R9AQ9ULJ8 1098 aa11.12□□□□□ -0.63
MCF2L-227ENST00000486806 SLC45A1Q9Y2W3 748 aa11.12□□□□□ -0.63
MCF2L-227ENST00000486806 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.12□□□□□ -0.63
MCF2L-227ENST00000486806 A0A0G2JMZ2 1700 aa11.12□□□□□ -0.63
MCF2L-227ENST00000486806 MYPNQ86TC9 1320 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 CCL15-CCL14A0A0B4J2E2 113 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 MANSC4A6NHS7 340 aaPredicted RBP11.11□□□□□ -0.63
MCF2L-227ENST00000486806 USP17L15C9J2P7 530 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 BTBD19C9JJ37 291 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 USP17L13C9JLJ4 530 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 USP17L11C9JVI0 530 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 USP17L18D6R9N7 530 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 USP17L22D6RA61 530 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 USP17L17D6RBQ6 530 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 USP17L19D6RCP7 530 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 USP17L20D6RJB6 530 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 FLOT1O75955 427 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 FDPSP14324 419 aaKnown RBP11.11□□□□□ -0.63
MCF2L-227ENST00000486806 HMGN5P82970 282 aaKnown RBP11.11□□□□□ -0.63
MCF2L-227ENST00000486806 USP17L24Q0WX57 530 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 CCL15Q16663 113 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 CYP4F22Q6NT55 531 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 ANKRD23Q86SG2 305 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 ADGRF4Q8IZF3 695 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 CHURC1Q8WUH1 139 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 PTPN18Q99952 460 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 SLF1Q9BQI6 1058 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 RANBP17Q9H2T7 1088 aaKnown RBP11.11□□□□□ -0.63
MCF2L-227ENST00000486806 JMJD4Q9H9V9 463 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 PRR12Q9ULL5 1215 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 ADAMTS5Q9UNA0 930 aa11.11□□□□□ -0.63
MCF2L-227ENST00000486806 SPDYE16A6NNV3 312 aaPredicted RBP11.1□□□□□ -0.63
MCF2L-227ENST00000486806 PRPF3O43395 683 aaKnown RBP11.1□□□□□ -0.63
MCF2L-227ENST00000486806 DTNBO60941 627 aa11.1□□□□□ -0.63
MCF2L-227ENST00000486806 PPFIA3O75145 1194 aa11.1□□□□□ -0.63
MCF2L-227ENST00000486806 PKN1Q16512 942 aa11.1□□□□□ -0.63
MCF2L-227ENST00000486806 DEFB115Q30KQ5 88 aa11.1□□□□□ -0.63
MCF2L-227ENST00000486806 LBX2Q6XYB7 198 aa11.1□□□□□ -0.63
MCF2L-227ENST00000486806 CCDC82Q8N4S0 544 aa11.1□□□□□ -0.63
MCF2L-227ENST00000486806 PRPF38AQ8NAV1 312 aaKnown RBP11.1□□□□□ -0.63
MCF2L-227ENST00000486806 REPS2Q8NFH8 660 aa11.1□□□□□ -0.63
MCF2L-227ENST00000486806 SLC26A6Q9BXS9 759 aa11.1□□□□□ -0.63
MCF2L-227ENST00000486806 ZCCHC17Q9NP64 241 aaKnown RBP11.1□□□□□ -0.63
MCF2L-227ENST00000486806 RBM27Q9P2N5 1060 aaKnown RBP11.1□□□□□ -0.63
MCF2L-227ENST00000486806 ISY1Q9ULR0 285 aaKnown RBP11.1□□□□□ -0.63
MCF2L-227ENST00000486806 PARP14Q460N5 1801 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 RLFQ13129 1914 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 IGF2BP3O00425 579 aaKnown RBP eCLIP11.09□□□□□ -0.63
MCF2L-227ENST00000486806 ZBTB5O15062 677 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 PPP1R11O60927 126 aaPredicted RBP11.09□□□□□ -0.63
MCF2L-227ENST00000486806 DEXIO95424 95 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 GJB2P29033 226 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 DSG3P32926 999 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 SLC4A3P48751 1232 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 SSRP1Q08945 709 aaKnown RBP11.09□□□□□ -0.63
MCF2L-227ENST00000486806 IKQ13123 557 aaPredicted RBP11.09□□□□□ -0.63
MCF2L-227ENST00000486806 NOGQ13253 232 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 PABPC4Q13310 644 aaKnown RBP eCLIP11.09□□□□□ -0.63
MCF2L-227ENST00000486806 COG2Q14746 738 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 CDC37Q16543 378 aaPredicted RBP11.09□□□□□ -0.63
MCF2L-227ENST00000486806 PFKFB3Q16875 520 aaPredicted RBP11.09□□□□□ -0.63
MCF2L-227ENST00000486806 POTEEQ6S8J3 1075 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 TRIM22Q8IYM9 498 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 FAM43AQ8N2R8 423 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 KIFC2Q96AC6 838 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 SHISA4Q96DD7 197 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 ATG4CQ96DT6 458 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 RRP36Q96EU6 259 aaKnown RBP11.09□□□□□ -0.63
MCF2L-227ENST00000486806 CAPNS2Q96L46 248 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 IPO9Q96P70 1041 aaKnown RBP11.09□□□□□ -0.63
MCF2L-227ENST00000486806 PIGSQ96S52 555 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 ZIC5Q96T25 663 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 ASCC2Q9H1I8 757 aaPredicted RBP11.09□□□□□ -0.63
MCF2L-227ENST00000486806 SLC38A10Q9HBR0 1119 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 ORC3Q9UBD5 711 aaPredicted RBP11.09□□□□□ -0.63
MCF2L-227ENST00000486806 SMC3Q9UQE7 1217 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 V9GY48 417 aaPredicted RBP11.09□□□□□ -0.63
MCF2L-227ENST00000486806 ZNF536O15090 1300 aa11.09□□□□□ -0.63
MCF2L-227ENST00000486806 PNMA6FA0A0J9YX94 578 aa11.08□□□□□ -0.64
MCF2L-227ENST00000486806 hCG_1642624A0A1W2PR95 340 aa11.08□□□□□ -0.64
MCF2L-227ENST00000486806 PDHXO00330 501 aa11.08□□□□□ -0.64
MCF2L-227ENST00000486806 VWA5AO00534 786 aa11.08□□□□□ -0.64
MCF2L-227ENST00000486806 FDX1P10109 184 aa11.08□□□□□ -0.64
MCF2L-227ENST00000486806 SCG2P13521 617 aa11.08□□□□□ -0.64
MCF2L-227ENST00000486806 DDIT3P35638 169 aa11.08□□□□□ -0.64
MCF2L-227ENST00000486806 INHBEP58166 350 aa11.08□□□□□ -0.64
MCF2L-227ENST00000486806 C1QTNF8P60827 252 aa11.08□□□□□ -0.64
MCF2L-227ENST00000486806 HERVK_113P62684 666 aa11.08□□□□□ -0.64
MCF2L-227ENST00000486806 IRX3P78415 501 aaPredicted RBP11.08□□□□□ -0.64
MCF2L-227ENST00000486806 HTRA3P83110 453 aa11.08□□□□□ -0.64
MCF2L-227ENST00000486806 SREBF2Q12772 1141 aa11.08□□□□□ -0.64
MCF2L-227ENST00000486806 QRICH1Q2TAL8 776 aa11.08□□□□□ -0.64
MCF2L-227ENST00000486806 PAXIP1Q6ZW49 1069 aaPredicted RBP11.08□□□□□ -0.64
MCF2L-227ENST00000486806 HOMER1Q86YM7 354 aa11.08□□□□□ -0.64
MCF2L-227ENST00000486806 DDX11Q96FC9 970 aa11.08□□□□□ -0.64
MCF2L-227ENST00000486806 AIFM3Q96NN9 605 aa11.08□□□□□ -0.64
MCF2L-227ENST00000486806 FOXD4L1Q9NU39 408 aa11.08□□□□□ -0.64
MCF2L-227ENST00000486806 SEC63Q9UGP8 760 aaKnown RBP11.08□□□□□ -0.64
MCF2L-227ENST00000486806 PNMA3Q9UL41 463 aa11.08□□□□□ -0.64
MCF2L-227ENST00000486806 ADGRA2Q96PE1 1338 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms