RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 PTPN18Q99952 460 aa9.46□□□□□ -0.9
USP40-216ENST00000485943 ASCC2Q9H1I8 757 aaPredicted RBP9.46□□□□□ -0.9
USP40-216ENST00000485943 SIPA1L1O43166 1804 aa9.46□□□□□ -0.9
USP40-216ENST00000485943 PTPRFP10586 1907 aa9.46□□□□□ -0.9
USP40-216ENST00000485943 DDX60LQ5H9U9 1706 aaKnown RBP9.45□□□□□ -0.9
USP40-216ENST00000485943 WDR46O15213 610 aaKnown RBP9.45□□□□□ -0.9
USP40-216ENST00000485943 REC8O95072 547 aa9.45□□□□□ -0.9
USP40-216ENST00000485943 OATP04181 439 aa9.45□□□□□ -0.9
USP40-216ENST00000485943 HOXB1P14653 301 aaPredicted RBP9.45□□□□□ -0.9
USP40-216ENST00000485943 ZKSCAN1P17029 563 aaPredicted RBP9.45□□□□□ -0.9
USP40-216ENST00000485943 VCAM1P19320 739 aa9.45□□□□□ -0.9
USP40-216ENST00000485943 RASA1P20936 1047 aa9.45□□□□□ -0.9
USP40-216ENST00000485943 SLC1A4P43007 532 aa9.45□□□□□ -0.9
USP40-216ENST00000485943 NT5C2P49902 561 aa9.45□□□□□ -0.9
USP40-216ENST00000485943 SLC9C1Q4G0N8 1177 aa9.45□□□□□ -0.9
USP40-216ENST00000485943 NOM1Q5C9Z4 860 aaKnown RBP9.45□□□□□ -0.9
USP40-216ENST00000485943 SH3D19Q5HYK7 790 aa9.45□□□□□ -0.9
USP40-216ENST00000485943 ACER1Q8TDN7 264 aa9.45□□□□□ -0.9
USP40-216ENST00000485943 NLRP7Q8WX94 980 aa9.45□□□□□ -0.9
USP40-216ENST00000485943 CHMP4CQ96CF2 233 aa9.45□□□□□ -0.9
USP40-216ENST00000485943 CFHR5Q9BXR6 569 aa9.45□□□□□ -0.9
USP40-216ENST00000485943 VCPKMTQ9H867 229 aa9.45□□□□□ -0.9
USP40-216ENST00000485943 KAT14Q9H8E8 782 aa9.45□□□□□ -0.9
USP40-216ENST00000485943 ROBO3Q96MS0 1386 aa9.45□□□□□ -0.9
USP40-216ENST00000485943 PHIPQ8WWQ0 1821 aa9.45□□□□□ -0.9
USP40-216ENST00000485943 ZBED4O75132 1171 aa9.44□□□□□ -0.9
USP40-216ENST00000485943 PRMT2P55345 433 aa9.44□□□□□ -0.9
USP40-216ENST00000485943 HERVK_113P62684 666 aa9.44□□□□□ -0.9
USP40-216ENST00000485943 UBXN2AP68543 259 aa9.44□□□□□ -0.9
USP40-216ENST00000485943 LACTBP83111 547 aaPredicted RBP9.44□□□□□ -0.9
USP40-216ENST00000485943 RRP1BQ14684 758 aaKnown RBP9.44□□□□□ -0.9
USP40-216ENST00000485943 COG2Q14746 738 aa9.44□□□□□ -0.9
USP40-216ENST00000485943 FAM110CQ1W6H9 321 aa9.44□□□□□ -0.9
USP40-216ENST00000485943 FBXO46Q6PJ61 603 aaPredicted RBP9.44□□□□□ -0.9
USP40-216ENST00000485943 NFXL1Q6ZNB6 911 aa9.44□□□□□ -0.9
USP40-216ENST00000485943 CLEC10AQ8IUN9 316 aa9.44□□□□□ -0.9
USP40-216ENST00000485943 LRRC47Q8N1G4 583 aaKnown RBP9.44□□□□□ -0.9
USP40-216ENST00000485943 NEDD1Q8NHV4 660 aa9.44□□□□□ -0.9
USP40-216ENST00000485943 NCOA7Q8NI08 942 aa9.44□□□□□ -0.9
USP40-216ENST00000485943 CEP95Q96GE4 821 aa9.44□□□□□ -0.9
USP40-216ENST00000485943 MCOLN1Q9GZU1 580 aa9.44□□□□□ -0.9
USP40-216ENST00000485943 SLC5A4Q9NY91 659 aa9.44□□□□□ -0.9
USP40-216ENST00000485943 NYAP2Q9P242 653 aa9.44□□□□□ -0.9
USP40-216ENST00000485943 TMX2Q9Y320 296 aa9.44□□□□□ -0.9
USP40-216ENST00000485943 ZMYM6O95789 1325 aa9.44□□□□□ -0.9
USP40-216ENST00000485943 MYPNQ86TC9 1320 aa9.44□□□□□ -0.9
USP40-216ENST00000485943 PCNTO95613 3336 aa9.43□□□□□ -0.9
USP40-216ENST00000485943 B4E1Z4 1266 aa9.43□□□□□ -0.9
USP40-216ENST00000485943 KDM4AO75164 1064 aa9.43□□□□□ -0.9
USP40-216ENST00000485943 MAPK4P31152 587 aa9.43□□□□□ -0.9
USP40-216ENST00000485943 HOXA7P31268 230 aaPredicted RBP9.43□□□□□ -0.9
USP40-216ENST00000485943 SHROOM1Q2M3G4 852 aaPredicted RBP9.43□□□□□ -0.9
USP40-216ENST00000485943 FAM83BQ5T0W9 1011 aa9.43□□□□□ -0.9
USP40-216ENST00000485943 IFIT1BQ5T764 474 aaKnown RBP9.43□□□□□ -0.9
USP40-216ENST00000485943 SLFN13Q68D06 897 aa9.43□□□□□ -0.9
USP40-216ENST00000485943 GPAT2Q6NUI2 795 aa9.43□□□□□ -0.9
USP40-216ENST00000485943 SYNE3Q6ZMZ3 975 aa9.43□□□□□ -0.9
USP40-216ENST00000485943 NCAPG2Q86XI2 1143 aa9.43□□□□□ -0.9
USP40-216ENST00000485943 MB21D1Q8N884 522 aa9.43□□□□□ -0.9
USP40-216ENST00000485943 CHURC1Q8WUH1 139 aa9.43□□□□□ -0.9
USP40-216ENST00000485943 STAG1Q8WVM7 1258 aa9.43□□□□□ -0.9
USP40-216ENST00000485943 KIFC2Q96AC6 838 aa9.43□□□□□ -0.9
USP40-216ENST00000485943 TRIM47Q96LD4 638 aa9.43□□□□□ -0.9
USP40-216ENST00000485943 ESYT1Q9BSJ8 1104 aa9.43□□□□□ -0.9
USP40-216ENST00000485943 FAM217BQ9NTX9 383 aaPredicted RBP9.43□□□□□ -0.9
USP40-216ENST00000485943 ANAPC4Q9UJX5 808 aa9.43□□□□□ -0.9
USP40-216ENST00000485943 NAP1L2Q9ULW6 460 aaPredicted RBP9.43□□□□□ -0.9
USP40-216ENST00000485943 LOC285556D6RIA3 1793 aa9.42□□□□□ -0.9
USP40-216ENST00000485943 F5H6K3 240 aa9.42□□□□□ -0.9
USP40-216ENST00000485943 SGSM2O43147 1006 aa9.42□□□□□ -0.9
USP40-216ENST00000485943 ORC4O43929 436 aa9.42□□□□□ -0.9
USP40-216ENST00000485943 TOP1P11387 765 aaKnown RBP9.42□□□□□ -0.9
USP40-216ENST00000485943 BMP3P12645 472 aa9.42□□□□□ -0.9
USP40-216ENST00000485943 STAT2P52630 851 aa9.42□□□□□ -0.9
USP40-216ENST00000485943 ERVK-9P63128 1117 aa9.42□□□□□ -0.9
USP40-216ENST00000485943 ERVK-24P63145 666 aa9.42□□□□□ -0.9
USP40-216ENST00000485943 KLRC3Q07444 240 aa9.42□□□□□ -0.9
USP40-216ENST00000485943 CATSPERGQ6ZRH7 1159 aa9.42□□□□□ -0.9
USP40-216ENST00000485943 OTOP1Q7RTM1 612 aa9.42□□□□□ -0.9
USP40-216ENST00000485943 FAM160B2Q86V87 743 aa9.42□□□□□ -0.9
USP40-216ENST00000485943 C12orf42Q96LP6 360 aa9.42□□□□□ -0.9
USP40-216ENST00000485943 P2RX7Q99572 595 aaKnown RBP9.42□□□□□ -0.9
USP40-216ENST00000485943 NUDT12Q9BQG2 462 aa9.42□□□□□ -0.9
USP40-216ENST00000485943 SLF1Q9BQI6 1058 aa9.42□□□□□ -0.9
USP40-216ENST00000485943 ZKSCAN3Q9BRR0 538 aa9.42□□□□□ -0.9
USP40-216ENST00000485943 MTMR4Q9NYA4 1195 aa9.42□□□□□ -0.9
USP40-216ENST00000485943 FEM1BQ9UK73 627 aa9.42□□□□□ -0.9
USP40-216ENST00000485943 RABGAP1Q9Y3P9 1069 aa9.42□□□□□ -0.9
USP40-216ENST00000485943 RBM8AQ9Y5S9 174 aaKnown RBP9.42□□□□□ -0.9
USP40-216ENST00000485943 TMEM232C9JQI7 657 aa9.41□□□□□ -0.9
USP40-216ENST00000485943 IFIT3O14879 490 aaKnown RBP9.41□□□□□ -0.9
USP40-216ENST00000485943 SNPHO15079 494 aa9.41□□□□□ -0.9
USP40-216ENST00000485943 MYCP01106 439 aaPredicted RBP9.41□□□□□ -0.9
USP40-216ENST00000485943 SSTR3P32745 418 aaPredicted RBP9.41□□□□□ -0.9
USP40-216ENST00000485943 GUCY1A2P33402 732 aa9.41□□□□□ -0.9
USP40-216ENST00000485943 COPB2P35606 906 aa9.41□□□□□ -0.9
USP40-216ENST00000485943 JAG1P78504 1218 aa9.41□□□□□ -0.9
USP40-216ENST00000485943 KRT32Q14532 448 aa9.41□□□□□ -0.9
USP40-216ENST00000485943 WTAPQ15007 396 aa9.41□□□□□ -0.9
USP40-216ENST00000485943 C17orf99Q6UX52 265 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms