RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 PIEZO1Q92508 2521 aa6.57□□□□□ -1.36
PTPN4-209ENST00000469511 REV3LO60673 3130 aa6.57□□□□□ -1.36
PTPN4-209ENST00000469511 PARP14Q460N5 1801 aa6.56□□□□□ -1.36
PTPN4-209ENST00000469511 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.56□□□□□ -1.36
PTPN4-209ENST00000469511 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.56□□□□□ -1.36
PTPN4-209ENST00000469511 KCNQ1P51787 676 aa6.56□□□□□ -1.36
PTPN4-209ENST00000469511 ATP2B2Q01814 1243 aa6.56□□□□□ -1.36
PTPN4-209ENST00000469511 LRRC41Q15345 812 aa6.56□□□□□ -1.36
PTPN4-209ENST00000469511 FAM47AQ5JRC9 791 aa6.56□□□□□ -1.36
PTPN4-209ENST00000469511 MFSD14CQ5VZR4 134 aa6.56□□□□□ -1.36
PTPN4-209ENST00000469511 RNF19BQ6ZMZ0 732 aa6.56□□□□□ -1.36
PTPN4-209ENST00000469511 ALYREFQ86V81 257 aaKnown RBP6.56□□□□□ -1.36
PTPN4-209ENST00000469511 TRMT44Q8IYL2 757 aaKnown RBP6.56□□□□□ -1.36
PTPN4-209ENST00000469511 SH3RF3Q8TEJ3 882 aaPredicted RBP6.56□□□□□ -1.36
PTPN4-209ENST00000469511 ATXN2LQ8WWM7 1075 aaKnown RBP6.56□□□□□ -1.36
PTPN4-209ENST00000469511 LENG1Q96BZ8 264 aaPredicted RBP6.56□□□□□ -1.36
PTPN4-209ENST00000469511 USB1Q9BQ65 265 aaKnown RBP6.56□□□□□ -1.36
PTPN4-209ENST00000469511 C11orf16Q9NQ32 467 aa6.56□□□□□ -1.36
PTPN4-209ENST00000469511 TMOD4Q9NZQ9 345 aa6.56□□□□□ -1.36
PTPN4-209ENST00000469511 THEGQ9P2T0 379 aa6.56□□□□□ -1.36
PTPN4-209ENST00000469511 CHD9Q3L8U1 2897 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 SLC15A5A6NIM6 579 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 USP17L10C9JJH3 530 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 KIAA0355O15063 1070 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 PGK1P00558 417 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 HOXC6P09630 235 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 TAL1P17542 331 aaPredicted RBP6.55□□□□□ -1.36
PTPN4-209ENST00000469511 IGFBP4P22692 258 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 MRPS5P82675 430 aaKnown RBP6.55□□□□□ -1.36
PTPN4-209ENST00000469511 GRB14Q14449 540 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 ADGRA1Q86SQ6 560 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 MAPKAPK5Q8IW41 473 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 CCAR1Q8IX12 1150 aaKnown RBP6.55□□□□□ -1.36
PTPN4-209ENST00000469511 ACER1Q8TDN7 264 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 LRRN4Q8WUT4 740 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 TSC1Q92574 1164 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 NSUN4Q96CB9 384 aaKnown RBP6.55□□□□□ -1.36
PTPN4-209ENST00000469511 TIFAQ96CG3 184 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 TRIM34Q9BYJ4 488 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 C1orf115Q9H7X2 142 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 AS3MTQ9HBK9 375 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 GDPD2Q9HCC8 539 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 HMG20BQ9P0W2 317 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 PALD1Q9ULE6 856 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 ZBTB21Q9ULJ3 1066 aa6.55□□□□□ -1.36
PTPN4-209ENST00000469511 SYNGAP1Q96PV0 1343 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 SCN5AQ14524 2016 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 FAM86C2PA6NEL3 165 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 C19orf81C9J6K1 198 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 KBTBD13C9JR72 458 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 RFXAPO00287 272 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 PQBP1O60828 265 aaKnown RBP6.54□□□□□ -1.36
PTPN4-209ENST00000469511 CLTBP09497 229 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 ACRP10323 421 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 RAG1P15918 1043 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 FPGSQ05932 587 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 FAAP100Q0VG06 881 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 KIAA1755Q5JYT7 1200 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 TMEM240Q5SV17 173 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 KRT40Q6A162 431 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 LYPD8Q6UX82 237 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 CATSPERGQ6ZRH7 1159 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 TEX11Q8IYF3 940 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 ARRDC4Q8NCT1 418 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 TGFBRAP1Q8WUH2 860 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 XAGE2Q96GT9 111 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 NKX2-4Q9H2Z4 354 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 CWC22Q9HCG8 908 aaKnown RBP6.54□□□□□ -1.36
PTPN4-209ENST00000469511 GNL3LQ9NVN8 582 aaKnown RBP6.54□□□□□ -1.36
PTPN4-209ENST00000469511 CEP126Q9P2H0 1117 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 SAP30BPQ9UHR5 308 aaKnown RBP6.54□□□□□ -1.36
PTPN4-209ENST00000469511 YBX2Q9Y2T7 364 aaKnown RBP6.54□□□□□ -1.36
PTPN4-209ENST00000469511 RABGAP1Q9Y3P9 1069 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 ZNF236Q9UL36 1845 aa6.54□□□□□ -1.36
PTPN4-209ENST00000469511 A0A0G2JMZ2 1700 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 LRRC37A2A6NM11 1700 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 SEPT4O43236 478 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 MSCO60682 206 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 GH2P01242 217 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 ASNSP08243 561 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 MYOGP15173 224 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 ADORA2AP29274 412 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 RABGGTBP53611 331 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 DYNLL1P63167 89 aaKnown RBP6.53□□□□□ -1.36
PTPN4-209ENST00000469511 TFCP2Q12800 502 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 MSS51Q4VC12 460 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 AKNAD1Q5T1N1 836 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 RASIP1Q5U651 963 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 C1orf53Q5VUE5 145 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 USP17L2Q6R6M4 530 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 CCDC129Q6ZRS4 1044 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 ZNF365Q70YC5 407 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 METTL16Q86W50 562 aaKnown RBP6.53□□□□□ -1.36
PTPN4-209ENST00000469511 MICALL1Q8N3F8 863 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 GAS2L1Q99501 681 aaPredicted RBP6.53□□□□□ -1.36
PTPN4-209ENST00000469511 MOV10L1Q9BXT6 1211 aaKnown RBP6.53□□□□□ -1.36
PTPN4-209ENST00000469511 CD320Q9NPF0 282 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 TMEM39AQ9NV64 488 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 AATFQ9NY61 560 aaKnown RBP eCLIP6.53□□□□□ -1.36
PTPN4-209ENST00000469511 CXXC1Q9P0U4 656 aaPredicted RBP6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms