RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 GPCPD1Q9NPB8 672 aa23.12■■□□□ 1.29
COL9A3-204ENST00000463487 PARP14Q460N5 1801 aa23.12■■□□□ 1.29
COL9A3-204ENST00000463487 A0A0G2JMZ2 1700 aa23.11■■□□□ 1.29
COL9A3-204ENST00000463487 PRMT2P55345 433 aa23.11■■□□□ 1.29
COL9A3-204ENST00000463487 SPATC1LQ9H0A9 340 aa23.11■■□□□ 1.29
COL9A3-204ENST00000463487 BTBD7Q9P203 1132 aa23.11■■□□□ 1.29
COL9A3-204ENST00000463487 TRIM17Q9Y577 477 aa23.11■■□□□ 1.29
COL9A3-204ENST00000463487 SLC12A7Q9Y666 1083 aa23.11■■□□□ 1.29
COL9A3-204ENST00000463487 CYP46A1Q9Y6A2 500 aa23.11■■□□□ 1.29
COL9A3-204ENST00000463487 RLFQ13129 1914 aa23.11■■□□□ 1.29
COL9A3-204ENST00000463487 SLC25A27O95847 323 aa23.1■■□□□ 1.29
COL9A3-204ENST00000463487 RPS6KB1P23443 525 aa23.1■■□□□ 1.29
COL9A3-204ENST00000463487 KIF5BP33176 963 aa23.1■■□□□ 1.29
COL9A3-204ENST00000463487 OAZ1P54368 228 aa23.1■■□□□ 1.29
COL9A3-204ENST00000463487 EXOSC10Q01780 885 aaKnown RBP23.1■■□□□ 1.29
COL9A3-204ENST00000463487 SYDE2Q5VT97 1194 aa23.1■■□□□ 1.29
COL9A3-204ENST00000463487 BTNL9Q6UXG8 535 aa23.1■■□□□ 1.29
COL9A3-204ENST00000463487 ZNF654Q8IZM8 581 aa23.1■■□□□ 1.29
COL9A3-204ENST00000463487 CTCFLQ8NI51 663 aaPredicted RBP23.1■■□□□ 1.29
COL9A3-204ENST00000463487 MAP3K14Q99558 947 aa23.1■■□□□ 1.29
COL9A3-204ENST00000463487 TEX13BQ9BXU2 312 aa23.1■■□□□ 1.29
COL9A3-204ENST00000463487 PNMA2Q9UL42 364 aa23.1■■□□□ 1.29
COL9A3-204ENST00000463487 CNMDO75829 334 aa23.09■■□□□ 1.29
COL9A3-204ENST00000463487 WDR78Q5VTH9 848 aa23.09■■□□□ 1.29
COL9A3-204ENST00000463487 RUFY3Q7L099 469 aa23.09■■□□□ 1.29
COL9A3-204ENST00000463487 OTOP1Q7RTM1 612 aa23.09■■□□□ 1.29
COL9A3-204ENST00000463487 SGMS1Q86VZ5 419 aa23.09■■□□□ 1.29
COL9A3-204ENST00000463487 SHCBP1Q8NEM2 672 aa23.09■■□□□ 1.29
COL9A3-204ENST00000463487 NUP133Q8WUM0 1156 aa23.09■■□□□ 1.29
COL9A3-204ENST00000463487 LRRC2Q9BYS8 371 aa23.09■■□□□ 1.29
COL9A3-204ENST00000463487 SLC38A10Q9HBR0 1119 aa23.09■■□□□ 1.29
COL9A3-204ENST00000463487 PRR12Q9ULL5 1215 aa23.09■■□□□ 1.29
COL9A3-204ENST00000463487 IVNS1ABPQ9Y6Y0 642 aa23.09■■□□□ 1.29
COL9A3-204ENST00000463487 STAT3P40763 770 aa23.08■■□□□ 1.29
COL9A3-204ENST00000463487 TMEM132BQ14DG7 1078 aa23.08■■□□□ 1.29
COL9A3-204ENST00000463487 RASGRP2Q7LDG7 609 aa23.08■■□□□ 1.29
COL9A3-204ENST00000463487 TRIM47Q96LD4 638 aa23.08■■□□□ 1.29
COL9A3-204ENST00000463487 MROH8Q9H579 483 aa23.08■■□□□ 1.29
COL9A3-204ENST00000463487 ZSWIM6Q9HCJ5 1215 aa23.08■■□□□ 1.29
COL9A3-204ENST00000463487 ATP2A1O14983 1001 aa23.07■■□□□ 1.28
COL9A3-204ENST00000463487 DHX16O60231 1041 aaKnown RBP23.07■■□□□ 1.28
COL9A3-204ENST00000463487 ECM2O94769 699 aaPredicted RBP23.07■■□□□ 1.28
COL9A3-204ENST00000463487 SEC24BO95487 1268 aa23.07■■□□□ 1.28
COL9A3-204ENST00000463487 GOLGA8HP0CJ92 632 aa23.07■■□□□ 1.28
COL9A3-204ENST00000463487 SLC16A2P36021 539 aa23.07■■□□□ 1.28
COL9A3-204ENST00000463487 GNAQP50148 359 aa23.07■■□□□ 1.28
COL9A3-204ENST00000463487 TROAPQ12815 778 aa23.07■■□□□ 1.28
COL9A3-204ENST00000463487 GRM4Q14833 912 aa23.07■■□□□ 1.28
COL9A3-204ENST00000463487 Q3C1V9 767 aa23.07■■□□□ 1.28
COL9A3-204ENST00000463487 NCAPG2Q86XI2 1143 aa23.07■■□□□ 1.28
COL9A3-204ENST00000463487 SOCS4Q8WXH5 440 aa23.07■■□□□ 1.28
COL9A3-204ENST00000463487 TCEANC2Q96MN5 208 aa23.07■■□□□ 1.28
COL9A3-204ENST00000463487 MOV10L1Q9BXT6 1211 aaKnown RBP23.07■■□□□ 1.28
COL9A3-204ENST00000463487 ARHGAP39Q9C0H5 1083 aa23.07■■□□□ 1.28
COL9A3-204ENST00000463487 ZNF214Q9UL59 606 aaPredicted RBP23.07■■□□□ 1.28
COL9A3-204ENST00000463487 KLRF2D3W0D1 207 aa23.06■■□□□ 1.28
COL9A3-204ENST00000463487 SNRNP48Q6IEG0 339 aaKnown RBP23.06■■□□□ 1.28
COL9A3-204ENST00000463487 TTBK2Q6IQ55 1244 aa23.06■■□□□ 1.28
COL9A3-204ENST00000463487 POTEEQ6S8J3 1075 aa23.06■■□□□ 1.28
COL9A3-204ENST00000463487 PLEKHH3Q7Z736 793 aa23.06■■□□□ 1.28
COL9A3-204ENST00000463487 RIOX2Q8IUF8 465 aa23.06■■□□□ 1.28
COL9A3-204ENST00000463487 CPXCR1Q8N123 301 aa23.06■■□□□ 1.28
COL9A3-204ENST00000463487 SENP2Q9HC62 589 aa23.06■■□□□ 1.28
COL9A3-204ENST00000463487 MGAMO43451 1857 aa23.06■■□□□ 1.28
COL9A3-204ENST00000463487 Q6ZUG5 572 aa23.05■■□□□ 1.28
COL9A3-204ENST00000463487 GPR142Q7Z601 462 aa23.05■■□□□ 1.28
COL9A3-204ENST00000463487 FBXL16Q8N461 479 aa23.05■■□□□ 1.28
COL9A3-204ENST00000463487 REPS2Q8NFH8 660 aa23.05■■□□□ 1.28
COL9A3-204ENST00000463487 PORCNQ9H237 461 aa23.05■■□□□ 1.28
COL9A3-204ENST00000463487 RANBP17Q9H2T7 1088 aaKnown RBP23.05■■□□□ 1.28
COL9A3-204ENST00000463487 GPHNQ9NQX3 736 aaPredicted RBP23.05■■□□□ 1.28
COL9A3-204ENST00000463487 SRRDQ9UH36 339 aa23.05■■□□□ 1.28
COL9A3-204ENST00000463487 COL11A1P12107 1806 aaPredicted RBP23.05■■□□□ 1.28
COL9A3-204ENST00000463487 PALM3A6NDB9 673 aaPredicted RBP23.04■■□□□ 1.28
COL9A3-204ENST00000463487 ZBTB43O43298 467 aa23.04■■□□□ 1.28
COL9A3-204ENST00000463487 STRNO43815 780 aa23.04■■□□□ 1.28
COL9A3-204ENST00000463487 PEX10O60683 326 aa23.04■■□□□ 1.28
COL9A3-204ENST00000463487 CPA1P15085 419 aa23.04■■□□□ 1.28
COL9A3-204ENST00000463487 ERCC3P19447 782 aa23.04■■□□□ 1.28
COL9A3-204ENST00000463487 RCAN1P53805 252 aa23.04■■□□□ 1.28
COL9A3-204ENST00000463487 FBXO46Q6PJ61 603 aaPredicted RBP23.04■■□□□ 1.28
COL9A3-204ENST00000463487 APOA5Q6Q788 366 aa23.04■■□□□ 1.28
COL9A3-204ENST00000463487 NUDT12Q9BQG2 462 aa23.04■■□□□ 1.28
COL9A3-204ENST00000463487 LZTS2Q9BRK4 669 aa23.04■■□□□ 1.28
COL9A3-204ENST00000463487 RAVER2Q9HCJ3 691 aaKnown RBP23.04■■□□□ 1.28
COL9A3-204ENST00000463487 FBXO40Q9UH90 709 aa23.04■■□□□ 1.28
COL9A3-204ENST00000463487 MAD2L2Q9UI95 211 aa23.04■■□□□ 1.28
COL9A3-204ENST00000463487 NAP1L2Q9ULW6 460 aaPredicted RBP23.04■■□□□ 1.28
COL9A3-204ENST00000463487 KLF18A0A0U1RQI7 1052 aa23.03■■□□□ 1.28
COL9A3-204ENST00000463487 SLC4A3P48751 1232 aa23.03■■□□□ 1.28
COL9A3-204ENST00000463487 TRAF1Q13077 416 aa23.03■■□□□ 1.28
COL9A3-204ENST00000463487 COL9A3Q14050 684 aaPredicted RBP23.03■■□□□ 1.28
COL9A3-204ENST00000463487 TKFCQ3LXA3 575 aa23.03■■□□□ 1.28
COL9A3-204ENST00000463487 CCDC174Q6PII3 467 aa23.03■■□□□ 1.28
COL9A3-204ENST00000463487 MICU3Q86XE3 530 aa23.03■■□□□ 1.28
COL9A3-204ENST00000463487 RAET1EQ8TD07 263 aa23.03■■□□□ 1.28
COL9A3-204ENST00000463487 BRF1Q92994 677 aa23.03■■□□□ 1.28
COL9A3-204ENST00000463487 IL17RAQ96F46 866 aa23.03■■□□□ 1.28
COL9A3-204ENST00000463487 C22orf23Q9BZE7 217 aa23.03■■□□□ 1.28
COL9A3-204ENST00000463487 UPF3BQ9BZI7 483 aaKnown RBP23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms