RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 USP26Q9BXU7 913 aa26.74■■□□□ 1.87
CCDC28B-203ENST00000461819 SNX14Q9Y5W7 946 aa26.74■■□□□ 1.87
CCDC28B-203ENST00000461819 PRKCZQ05513 592 aa26.73■■□□□ 1.87
CCDC28B-203ENST00000461819 ADCK5Q3MIX3 580 aa26.73■■□□□ 1.87
CCDC28B-203ENST00000461819 GPATCH4Q5T3I0 446 aaKnown RBP26.73■■□□□ 1.87
CCDC28B-203ENST00000461819 RAET1EQ8TD07 263 aa26.73■■□□□ 1.87
CCDC28B-203ENST00000461819 KCNB2Q92953 911 aa26.73■■□□□ 1.87
CCDC28B-203ENST00000461819 PTCH2Q9Y6C5 1203 aa26.73■■□□□ 1.87
CCDC28B-203ENST00000461819 FDX1P10109 184 aa26.72■■□□□ 1.87
CCDC28B-203ENST00000461819 SLC16A2P36021 539 aa26.72■■□□□ 1.87
CCDC28B-203ENST00000461819 COL9A3Q14050 684 aaPredicted RBP26.72■■□□□ 1.87
CCDC28B-203ENST00000461819 TTBK2Q6IQ55 1244 aa26.72■■□□□ 1.87
CCDC28B-203ENST00000461819 GPR142Q7Z601 462 aa26.72■■□□□ 1.87
CCDC28B-203ENST00000461819 PLEKHH3Q7Z736 793 aa26.72■■□□□ 1.87
CCDC28B-203ENST00000461819 REPS2Q8NFH8 660 aa26.72■■□□□ 1.87
CCDC28B-203ENST00000461819 IGDCC4Q8TDY8 1250 aa26.72■■□□□ 1.87
CCDC28B-203ENST00000461819 JAKMIP1Q96N16 626 aaKnown RBP26.72■■□□□ 1.87
CCDC28B-203ENST00000461819 SLC38A10Q9HBR0 1119 aa26.72■■□□□ 1.87
CCDC28B-203ENST00000461819 SENP2Q9HC62 589 aa26.72■■□□□ 1.87
CCDC28B-203ENST00000461819 PRR12Q9ULL5 1215 aa26.72■■□□□ 1.87
CCDC28B-203ENST00000461819 GABRQQ9UN88 632 aa26.72■■□□□ 1.87
CCDC28B-203ENST00000461819 HMGB1P09429 215 aaKnown RBP26.71■■□□□ 1.87
CCDC28B-203ENST00000461819 PARP1P09874 1014 aaKnown RBP26.71■■□□□ 1.87
CCDC28B-203ENST00000461819 GOLGA8HP0CJ92 632 aa26.71■■□□□ 1.87
CCDC28B-203ENST00000461819 ASPRV1Q53RT3 343 aa26.71■■□□□ 1.87
CCDC28B-203ENST00000461819 SYDE2Q5VT97 1194 aa26.71■■□□□ 1.87
CCDC28B-203ENST00000461819 NFXL1Q6ZNB6 911 aa26.71■■□□□ 1.87
CCDC28B-203ENST00000461819 NCAPG2Q86XI2 1143 aa26.71■■□□□ 1.87
CCDC28B-203ENST00000461819 CPXCR1Q8N123 301 aa26.71■■□□□ 1.87
CCDC28B-203ENST00000461819 SHCBP1Q8NEM2 672 aa26.71■■□□□ 1.87
CCDC28B-203ENST00000461819 TEX13BQ9BXU2 312 aa26.71■■□□□ 1.87
CCDC28B-203ENST00000461819 LRRC2Q9BYS8 371 aa26.71■■□□□ 1.87
CCDC28B-203ENST00000461819 LY9Q9HBG7 655 aa26.71■■□□□ 1.87
CCDC28B-203ENST00000461819 ZNF214Q9UL59 606 aaPredicted RBP26.71■■□□□ 1.87
CCDC28B-203ENST00000461819 IVNS1ABPQ9Y6Y0 642 aa26.71■■□□□ 1.87
CCDC28B-203ENST00000461819 MYH6P13533 1939 aa26.71■■□□□ 1.87
CCDC28B-203ENST00000461819 SH2B2O14492 632 aaPredicted RBP26.7■■□□□ 1.86
CCDC28B-203ENST00000461819 SLC25A27O95847 323 aa26.7■■□□□ 1.86
CCDC28B-203ENST00000461819 ERCC3P19447 782 aa26.7■■□□□ 1.86
CCDC28B-203ENST00000461819 STAT3P40763 770 aa26.7■■□□□ 1.86
CCDC28B-203ENST00000461819 FLT3LGP49771 235 aa26.7■■□□□ 1.86
CCDC28B-203ENST00000461819 SNRNP48Q6IEG0 339 aaKnown RBP26.7■■□□□ 1.86
CCDC28B-203ENST00000461819 BTNL9Q6UXG8 535 aa26.7■■□□□ 1.86
CCDC28B-203ENST00000461819 CATIPQ7Z7H3 387 aa26.7■■□□□ 1.86
CCDC28B-203ENST00000461819 GPHNQ9NQX3 736 aaPredicted RBP26.7■■□□□ 1.86
CCDC28B-203ENST00000461819 WDR19Q8NEZ3 1342 aa26.69■■□□□ 1.86
CCDC28B-203ENST00000461819 CCDC69A6NI79 296 aa26.69■■□□□ 1.86
CCDC28B-203ENST00000461819 COPB2P35606 906 aa26.69■■□□□ 1.86
CCDC28B-203ENST00000461819 SLC4A3P48751 1232 aa26.69■■□□□ 1.86
CCDC28B-203ENST00000461819 DHX32Q7L7V1 743 aaKnown RBP26.69■■□□□ 1.86
CCDC28B-203ENST00000461819 RIOX2Q8IUF8 465 aa26.69■■□□□ 1.86
CCDC28B-203ENST00000461819 SOCS4Q8WXH5 440 aa26.69■■□□□ 1.86
CCDC28B-203ENST00000461819 MROH8Q9H579 483 aa26.69■■□□□ 1.86
CCDC28B-203ENST00000461819 RAVER2Q9HCJ3 691 aaKnown RBP26.69■■□□□ 1.86
CCDC28B-203ENST00000461819 HPS5Q9UPZ3 1129 aa26.69■■□□□ 1.86
CCDC28B-203ENST00000461819 ZNF236Q9UL36 1845 aa26.69■■□□□ 1.86
CCDC28B-203ENST00000461819 HTTP42858 3142 aa26.69■■□□□ 1.86
CCDC28B-203ENST00000461819 OAZ1P54368 228 aa26.68■■□□□ 1.86
CCDC28B-203ENST00000461819 CCDC174Q6PII3 467 aa26.68■■□□□ 1.86
CCDC28B-203ENST00000461819 TMTC2Q8N394 836 aa26.68■■□□□ 1.86
CCDC28B-203ENST00000461819 ABHD8Q96I13 439 aa26.68■■□□□ 1.86
CCDC28B-203ENST00000461819 TCEANC2Q96MN5 208 aa26.68■■□□□ 1.86
CCDC28B-203ENST00000461819 NUDT12Q9BQG2 462 aa26.68■■□□□ 1.86
CCDC28B-203ENST00000461819 ZNFX1Q9P2E3 1918 aaKnown RBP26.68■■□□□ 1.86
CCDC28B-203ENST00000461819 ATP2A1O14983 1001 aa26.67■■□□□ 1.86
CCDC28B-203ENST00000461819 PSMA5P28066 241 aa26.67■■□□□ 1.86
CCDC28B-203ENST00000461819 LIFRP42702 1097 aa26.67■■□□□ 1.86
CCDC28B-203ENST00000461819 SNAP25P60880 206 aa26.67■■□□□ 1.86
CCDC28B-203ENST00000461819 SLC9C1Q4G0N8 1177 aa26.67■■□□□ 1.86
CCDC28B-203ENST00000461819 BLOC1S2Q6QNY1 142 aa26.67■■□□□ 1.86
CCDC28B-203ENST00000461819 DHX16O60231 1041 aaKnown RBP26.66■■□□□ 1.86
CCDC28B-203ENST00000461819 CPA1P15085 419 aa26.66■■□□□ 1.86
CCDC28B-203ENST00000461819 FGD1P98174 961 aa26.66■■□□□ 1.86
CCDC28B-203ENST00000461819 ZNF654Q8IZM8 581 aa26.66■■□□□ 1.86
CCDC28B-203ENST00000461819 NUP133Q8WUM0 1156 aa26.66■■□□□ 1.86
CCDC28B-203ENST00000461819 UBA5Q9GZZ9 404 aa26.66■■□□□ 1.86
CCDC28B-203ENST00000461819 SLC15A5A6NIM6 579 aa26.65■■□□□ 1.86
CCDC28B-203ENST00000461819 DDAH1O94760 285 aa26.65■■□□□ 1.86
CCDC28B-203ENST00000461819 CASTP20810 708 aaKnown RBP26.65■■□□□ 1.86
CCDC28B-203ENST00000461819 PTPREP23469 700 aa26.65■■□□□ 1.86
CCDC28B-203ENST00000461819 EXOSC10Q01780 885 aaKnown RBP26.65■■□□□ 1.86
CCDC28B-203ENST00000461819 IRF5Q13568 498 aa26.65■■□□□ 1.86
CCDC28B-203ENST00000461819 GRM4Q14833 912 aa26.65■■□□□ 1.86
CCDC28B-203ENST00000461819 RANBP17Q9H2T7 1088 aaKnown RBP26.65■■□□□ 1.86
CCDC28B-203ENST00000461819 CPVLQ9H3G5 476 aa26.65■■□□□ 1.86
CCDC28B-203ENST00000461819 GJD2Q9UKL4 321 aa26.65■■□□□ 1.86
CCDC28B-203ENST00000461819 PLXNA1Q9UIW2 1896 aa26.64■■□□□ 1.86
CCDC28B-203ENST00000461819 ADCY3O60266 1144 aa26.64■■□□□ 1.86
CCDC28B-203ENST00000461819 CYP2B6P20813 491 aa26.64■■□□□ 1.86
CCDC28B-203ENST00000461819 RGS2P41220 211 aa26.64■■□□□ 1.86
CCDC28B-203ENST00000461819 TROAPQ12815 778 aa26.64■■□□□ 1.86
CCDC28B-203ENST00000461819 GRB14Q14449 540 aa26.64■■□□□ 1.86
CCDC28B-203ENST00000461819 C8orf34Q49A92 452 aa26.64■■□□□ 1.86
CCDC28B-203ENST00000461819 MORN1Q5T089 497 aa26.64■■□□□ 1.86
CCDC28B-203ENST00000461819 SLAIN1Q8ND83 568 aa26.64■■□□□ 1.86
CCDC28B-203ENST00000461819 MYL10Q9BUA6 226 aa26.64■■□□□ 1.86
CCDC28B-203ENST00000461819 HOMER2Q9NSB8 354 aa26.64■■□□□ 1.86
CCDC28B-203ENST00000461819 MAD2L2Q9UI95 211 aa26.64■■□□□ 1.86
CCDC28B-203ENST00000461819 SLC12A7Q9Y666 1083 aa26.64■■□□□ 1.86
CCDC28B-203ENST00000461819 KLRF2D3W0D1 207 aa26.63■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms