RNA–Protein interactions for RNA: ENST00000452143.5

USP1-204, Transcript of ubiquitin specific peptidase 1, humanhuman

TSL 3

Gene USP1, Length 893 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-204ENST00000452143 ZNF287Q9HBT7 754 aa13.03□□□□□ -0.32
USP1-204ENST00000452143 PRDM5Q9NQX1 630 aaPredicted RBP13.03□□□□□ -0.32
USP1-204ENST00000452143 PDLIM7Q9NR12 457 aa13.03□□□□□ -0.32
USP1-204ENST00000452143 NYAP2Q9P242 653 aa13.03□□□□□ -0.32
USP1-204ENST00000452143 GSG1L2A8MUP6 293 aa13.02□□□□□ -0.33
USP1-204ENST00000452143 ATP2A1O14983 1001 aa13.02□□□□□ -0.33
USP1-204ENST00000452143 RAD21O60216 631 aa13.02□□□□□ -0.33
USP1-204ENST00000452143 SMARCA5O60264 1052 aaPredicted RBP13.02□□□□□ -0.33
USP1-204ENST00000452143 PGK2P07205 417 aa13.02□□□□□ -0.33
USP1-204ENST00000452143 AKR1A1P14550 325 aa13.02□□□□□ -0.33
USP1-204ENST00000452143 LRRFIP1Q32MZ4 808 aaKnown RBP13.02□□□□□ -0.33
USP1-204ENST00000452143 PRAMEF19Q5SWL8 479 aa13.02□□□□□ -0.33
USP1-204ENST00000452143 MKNK2Q9HBH9 465 aa13.02□□□□□ -0.33
USP1-204ENST00000452143 CNPY2Q9Y2B0 182 aa13.02□□□□□ -0.33
USP1-204ENST00000452143 SYNGAP1Q96PV0 1343 aa13.02□□□□□ -0.33
USP1-204ENST00000452143 PLIN4Q96Q06 1357 aa13.02□□□□□ -0.33
USP1-204ENST00000452143 EYSQ5T1H1 3165 aa13.02□□□□□ -0.33
USP1-204ENST00000452143 MCM3APO60318 1980 aa13.01□□□□□ -0.33
USP1-204ENST00000452143 F5H6K3 240 aa13.01□□□□□ -0.33
USP1-204ENST00000452143 GPAA1O43292 621 aa13.01□□□□□ -0.33
USP1-204ENST00000452143 NDUFB10O96000 172 aa13.01□□□□□ -0.33
USP1-204ENST00000452143 TDO2P48775 406 aa13.01□□□□□ -0.33
USP1-204ENST00000452143 KLRC3Q07444 240 aa13.01□□□□□ -0.33
USP1-204ENST00000452143 ZNF697Q5TEC3 545 aa13.01□□□□□ -0.33
USP1-204ENST00000452143 SNRNP48Q6IEG0 339 aaKnown RBP13.01□□□□□ -0.33
USP1-204ENST00000452143 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.01□□□□□ -0.33
USP1-204ENST00000452143 PRPF38AQ8NAV1 312 aaKnown RBP13.01□□□□□ -0.33
USP1-204ENST00000452143 OSBP2Q969R2 916 aa13.01□□□□□ -0.33
USP1-204ENST00000452143 FERMT2Q96AC1 680 aa13.01□□□□□ -0.33
USP1-204ENST00000452143 EPB41L4AQ9HCS5 686 aaPredicted RBP13.01□□□□□ -0.33
USP1-204ENST00000452143 VCANP13611 3396 aa13□□□□□ -0.33
USP1-204ENST00000452143 IGKV6D-41A0A0C4DH26 115 aa13□□□□□ -0.33
USP1-204ENST00000452143 A0A1W2PQ45 241 aaPredicted RBP13□□□□□ -0.33
USP1-204ENST00000452143 A0A1W2PQY0 241 aa13□□□□□ -0.33
USP1-204ENST00000452143 MINDY4BA8MYZ0 360 aa13□□□□□ -0.33
USP1-204ENST00000452143 RNF113AO15541 343 aaKnown RBP13□□□□□ -0.33
USP1-204ENST00000452143 ADAMTS4O75173 837 aa13□□□□□ -0.33
USP1-204ENST00000452143 CLTBP09497 229 aa13□□□□□ -0.33
USP1-204ENST00000452143 ZNF865P0CJ78 1059 aaPredicted RBP13□□□□□ -0.33
USP1-204ENST00000452143 C20orf194Q5TEA3 1177 aa13□□□□□ -0.33
USP1-204ENST00000452143 MAMDC4Q6UXC1 1216 aa13□□□□□ -0.33
USP1-204ENST00000452143 ZNF467Q7Z7K2 595 aaPredicted RBP13□□□□□ -0.33
USP1-204ENST00000452143 BADQ92934 168 aa13□□□□□ -0.33
USP1-204ENST00000452143 GUCD1Q96NT3 240 aa13□□□□□ -0.33
USP1-204ENST00000452143 NUP88Q99567 741 aaPredicted RBP13□□□□□ -0.33
USP1-204ENST00000452143 DCTPP1Q9H773 170 aa13□□□□□ -0.33
USP1-204ENST00000452143 TACC3Q9Y6A5 838 aa13□□□□□ -0.33
USP1-204ENST00000452143 TTC41PQ6P2S7 1318 aa12.99□□□□□ -0.33
USP1-204ENST00000452143 DNAJC25-GNG10A0A024R161 153 aa12.99□□□□□ -0.33
USP1-204ENST00000452143 MOXD2PA6NHM9 499 aa12.99□□□□□ -0.33
USP1-204ENST00000452143 PGK1P00558 417 aa12.99□□□□□ -0.33
USP1-204ENST00000452143 OAZ1P54368 228 aa12.99□□□□□ -0.33
USP1-204ENST00000452143 SMAD3P84022 425 aaKnown RBP12.99□□□□□ -0.33
USP1-204ENST00000452143 TLE2Q04725 743 aa12.99□□□□□ -0.33
USP1-204ENST00000452143 SHHQ15465 462 aa12.99□□□□□ -0.33
USP1-204ENST00000452143 GMCL1P1Q8NEA9 526 aa12.99□□□□□ -0.33
USP1-204ENST00000452143 MKL1Q969V6 931 aa12.99□□□□□ -0.33
USP1-204ENST00000452143 DDX11Q96FC9 970 aa12.99□□□□□ -0.33
USP1-204ENST00000452143 TSEN34Q9BSV6 310 aaKnown RBP12.99□□□□□ -0.33
USP1-204ENST00000452143 SLC38A10Q9HBR0 1119 aa12.99□□□□□ -0.33
USP1-204ENST00000452143 FBXO40Q9UH90 709 aa12.99□□□□□ -0.33
USP1-204ENST00000452143 FARP1Q9Y4F1 1045 aaPredicted RBP12.99□□□□□ -0.33
USP1-204ENST00000452143 LRRC37A2A6NM11 1700 aa12.99□□□□□ -0.33
USP1-204ENST00000452143 SYNRGQ9UMZ2 1314 aa12.98□□□□□ -0.33
USP1-204ENST00000452143 TRIM43BA6NCK2 446 aa12.98□□□□□ -0.33
USP1-204ENST00000452143 KIAA0355O15063 1070 aa12.98□□□□□ -0.33
USP1-204ENST00000452143 ZBED4O75132 1171 aa12.98□□□□□ -0.33
USP1-204ENST00000452143 TTLL1O95922 423 aa12.98□□□□□ -0.33
USP1-204ENST00000452143 FDX1P10109 184 aa12.98□□□□□ -0.33
USP1-204ENST00000452143 TAL1P17542 331 aaPredicted RBP12.98□□□□□ -0.33
USP1-204ENST00000452143 C9orf50Q5SZB4 431 aa12.98□□□□□ -0.33
USP1-204ENST00000452143 ANKRD33Q7Z3H0 272 aa12.98□□□□□ -0.33
USP1-204ENST00000452143 SH3RF1Q7Z6J0 888 aa12.98□□□□□ -0.33
USP1-204ENST00000452143 ZNF444Q8N0Y2 327 aaPredicted RBP12.98□□□□□ -0.33
USP1-204ENST00000452143 NUP133Q8WUM0 1156 aa12.98□□□□□ -0.33
USP1-204ENST00000452143 TRIM43Q96BQ3 446 aaPredicted RBP12.98□□□□□ -0.33
USP1-204ENST00000452143 CEP95Q96GE4 821 aa12.98□□□□□ -0.33
USP1-204ENST00000452143 TOX2Q96NM4 488 aa12.98□□□□□ -0.33
USP1-204ENST00000452143 DCBLD2Q96PD2 775 aa12.98□□□□□ -0.33
USP1-204ENST00000452143 NACAP1Q9BZK3 213 aa12.98□□□□□ -0.33
USP1-204ENST00000452143 MTMR4Q9NYA4 1195 aa12.98□□□□□ -0.33
USP1-204ENST00000452143 CLIP2Q9UDT6 1046 aa12.98□□□□□ -0.33
USP1-204ENST00000452143 FEM1BQ9UK73 627 aa12.98□□□□□ -0.33
USP1-204ENST00000452143 FAM184BQ9ULE4 1060 aa12.98□□□□□ -0.33
USP1-204ENST00000452143 CTDP1Q9Y5B0 961 aaPredicted RBP12.98□□□□□ -0.33
USP1-204ENST00000452143 SPTBN5Q9NRC6 3674 aaKnown RBP12.98□□□□□ -0.33
USP1-204ENST00000452143 TMEM265A0A087WTH1 108 aa12.97□□□□□ -0.33
USP1-204ENST00000452143 PATL2C9JE40 543 aaKnown RBP12.97□□□□□ -0.33
USP1-204ENST00000452143 M0R2C6 588 aa12.97□□□□□ -0.33
USP1-204ENST00000452143 ERC2O15083 957 aa12.97□□□□□ -0.33
USP1-204ENST00000452143 DUSP11O75319 330 aaKnown RBP12.97□□□□□ -0.33
USP1-204ENST00000452143 APPP05067 770 aa12.97□□□□□ -0.33
USP1-204ENST00000452143 SLC3A2P08195 630 aaKnown RBP12.97□□□□□ -0.33
USP1-204ENST00000452143 CST5P28325 142 aaPredicted RBP12.97□□□□□ -0.33
USP1-204ENST00000452143 ACLYP53396 1101 aa12.97□□□□□ -0.33
USP1-204ENST00000452143 PDE4BQ07343 736 aa12.97□□□□□ -0.33
USP1-204ENST00000452143 TSHZ3Q63HK5 1081 aa12.97□□□□□ -0.33
USP1-204ENST00000452143 IFNL3Q8IZI9 196 aa12.97□□□□□ -0.33
USP1-204ENST00000452143 STK11IPQ8N1F8 1099 aa12.97□□□□□ -0.33
USP1-204ENST00000452143 CHST13Q8NET6 341 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms