RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 TTC38Q5R3I4 469 aa8.14□□□□□ -1.11
COL28A1-202ENST00000430711 SPATA1Q5VX52 437 aa8.14□□□□□ -1.11
COL28A1-202ENST00000430711 RGS22Q8NE09 1264 aa8.14□□□□□ -1.11
COL28A1-202ENST00000430711 ZNF804BA4D1E1 1349 aa8.14□□□□□ -1.11
COL28A1-202ENST00000430711 RASSF10A6NK89 507 aa8.13□□□□□ -1.11
COL28A1-202ENST00000430711 ZSCAN12O43309 604 aa8.13□□□□□ -1.11
COL28A1-202ENST00000430711 ZMYND10O75800 440 aa8.13□□□□□ -1.11
COL28A1-202ENST00000430711 USP17L8P0C7I0 530 aa8.13□□□□□ -1.11
COL28A1-202ENST00000430711 ATP6V1AP38606 617 aa8.13□□□□□ -1.11
COL28A1-202ENST00000430711 PRCPP42785 496 aa8.13□□□□□ -1.11
COL28A1-202ENST00000430711 IFIT1BQ5T764 474 aaKnown RBP8.13□□□□□ -1.11
COL28A1-202ENST00000430711 RRAGBQ5VZM2 374 aa8.13□□□□□ -1.11
COL28A1-202ENST00000430711 TMTC3Q6ZXV5 915 aa8.13□□□□□ -1.11
COL28A1-202ENST00000430711 FCHSD1Q86WN1 690 aa8.13□□□□□ -1.11
COL28A1-202ENST00000430711 C4orf32Q8N8J7 132 aa8.13□□□□□ -1.11
COL28A1-202ENST00000430711 ZNF579Q8NAF0 562 aaKnown RBP8.13□□□□□ -1.11
COL28A1-202ENST00000430711 FAM84BQ96KN1 310 aaPredicted RBP8.13□□□□□ -1.11
COL28A1-202ENST00000430711 RNF26Q9BY78 433 aaPredicted RBP8.13□□□□□ -1.11
COL28A1-202ENST00000430711 PLEKHA4Q9H4M7 779 aa8.13□□□□□ -1.11
COL28A1-202ENST00000430711 CNNM2Q9H8M5 875 aa8.13□□□□□ -1.11
COL28A1-202ENST00000430711 PDE11AQ9HCR9 933 aa8.13□□□□□ -1.11
COL28A1-202ENST00000430711 ABCB6Q9NP58 842 aa8.13□□□□□ -1.11
COL28A1-202ENST00000430711 DUSP10Q9Y6W6 482 aa8.13□□□□□ -1.11
COL28A1-202ENST00000430711 UTRNP46939 3433 aa8.13□□□□□ -1.11
COL28A1-202ENST00000430711 ATP2C1P98194 919 aaPredicted RBP8.13□□□□□ -1.11
COL28A1-202ENST00000430711 MCM6Q14566 821 aa8.13□□□□□ -1.11
COL28A1-202ENST00000430711 CAMKK2Q96RR4 588 aa8.13□□□□□ -1.11
COL28A1-202ENST00000430711 IL17RBQ9NRM6 502 aa8.13□□□□□ -1.11
COL28A1-202ENST00000430711 TMEM51Q9NW97 253 aa8.13□□□□□ -1.11
COL28A1-202ENST00000430711 LAMB1P07942 1786 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 ERICH2A1L162 156 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 USP17L3A6NCW0 530 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 USP17L4A6NCW7 530 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 VGLL3A8MV65 326 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 ERVV-1B6SEH8 477 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 ANKRD65E5RJM6 399 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 PRPF3O43395 683 aaKnown RBP8.12□□□□□ -1.11
COL28A1-202ENST00000430711 CYTH3O43739 400 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 PHACTR2O75167 634 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 CCDC175P0C221 793 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 GOLGA8HP0CJ92 632 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 MYBL2P10244 700 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 ERCC5P28715 1186 aaPredicted RBP8.12□□□□□ -1.11
COL28A1-202ENST00000430711 CHMP4BP1P59074 171 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 HERVK_113P62684 666 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 MECOMQ03112 1051 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 VPS72Q15906 364 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 BEND6Q5SZJ8 279 aaPredicted RBP8.12□□□□□ -1.11
COL28A1-202ENST00000430711 WDR59Q6PJI9 974 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 USP17L1Q7RTZ2 530 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 MARCH10Q8NA82 808 aaPredicted RBP8.12□□□□□ -1.11
COL28A1-202ENST00000430711 NELFBQ8WX92 580 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 ABHD10Q9NUJ1 306 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 CCDC87Q9NVE4 849 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.12□□□□□ -1.11
COL28A1-202ENST00000430711 WNK3Q9BYP7 1800 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 TTC26A0AVF1 554 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 LRRIQ3A6PVS8 624 aaPredicted RBP8.12□□□□□ -1.11
COL28A1-202ENST00000430711 ZNF185O15231 689 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 PLEKP08567 350 aaPredicted RBP8.12□□□□□ -1.11
COL28A1-202ENST00000430711 SLURP2P0DP57 97 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 COPB1P53618 953 aaKnown RBP8.12□□□□□ -1.11
COL28A1-202ENST00000430711 AMPD2Q01433 879 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 SMCR8Q8TEV9 937 aaPredicted RBP8.12□□□□□ -1.11
COL28A1-202ENST00000430711 RIN2Q8WYP3 895 aaPredicted RBP8.12□□□□□ -1.11
COL28A1-202ENST00000430711 ESR2Q92731 530 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 NSUN4Q96CB9 384 aaKnown RBP8.12□□□□□ -1.11
COL28A1-202ENST00000430711 PANX2Q96RD6 677 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 UIMC1Q96RL1 719 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 NACAP1Q9BZK3 213 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 DCP1AQ9NPI6 582 aaPredicted RBP8.12□□□□□ -1.11
COL28A1-202ENST00000430711 SMARCAL1Q9NZC9 954 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 MINPP1Q9UNW1 487 aa8.12□□□□□ -1.11
COL28A1-202ENST00000430711 MYH1P12882 1939 aa8.11□□□□□ -1.11
COL28A1-202ENST00000430711 LOC102724428A0A0B4J2F2 783 aa8.11□□□□□ -1.11
COL28A1-202ENST00000430711 MAP2K7O14733 419 aa8.11□□□□□ -1.11
COL28A1-202ENST00000430711 TRIM66O15016 1216 aa8.11□□□□□ -1.11
COL28A1-202ENST00000430711 N4BP3O15049 544 aa8.11□□□□□ -1.11
COL28A1-202ENST00000430711 EPHB6O15197 1021 aa8.11□□□□□ -1.11
COL28A1-202ENST00000430711 ATP1A1P05023 1023 aaKnown RBP8.11□□□□□ -1.11
COL28A1-202ENST00000430711 TXLNAP40222 546 aa8.11□□□□□ -1.11
COL28A1-202ENST00000430711 SIK1P57059 783 aa8.11□□□□□ -1.11
COL28A1-202ENST00000430711 SART3Q15020 963 aaKnown RBP8.11□□□□□ -1.11
COL28A1-202ENST00000430711 SRGAP1Q7Z6B7 1085 aa8.11□□□□□ -1.11
COL28A1-202ENST00000430711 ELOA2Q8IYF1 753 aaPredicted RBP8.11□□□□□ -1.11
COL28A1-202ENST00000430711 GPR161Q8N6U8 529 aaKnown RBP8.11□□□□□ -1.11
COL28A1-202ENST00000430711 WASF1Q92558 559 aa8.11□□□□□ -1.11
COL28A1-202ENST00000430711 LACRTQ9GZZ8 138 aa8.11□□□□□ -1.11
COL28A1-202ENST00000430711 AGPAT5Q9NUQ2 364 aa8.11□□□□□ -1.11
COL28A1-202ENST00000430711 SRP68Q9UHB9 627 aaKnown RBP8.11□□□□□ -1.11
COL28A1-202ENST00000430711 ANAPC4Q9UJX5 808 aa8.11□□□□□ -1.11
COL28A1-202ENST00000430711 SBF2Q86WG5 1849 aa8.11□□□□□ -1.11
COL28A1-202ENST00000430711 KCNJ18B7U540 433 aa8.11□□□□□ -1.11
COL28A1-202ENST00000430711 PDE2AO00408 941 aaPredicted RBP8.11□□□□□ -1.11
COL28A1-202ENST00000430711 KLRC4O43908 158 aa8.11□□□□□ -1.11
COL28A1-202ENST00000430711 IGHMBP2P38935 993 aaKnown RBP8.11□□□□□ -1.11
COL28A1-202ENST00000430711 ATP2B2Q01814 1243 aa8.11□□□□□ -1.11
COL28A1-202ENST00000430711 KCNJ12Q14500 433 aa8.11□□□□□ -1.11
COL28A1-202ENST00000430711 DIXDC1Q155Q3 683 aa8.11□□□□□ -1.11
COL28A1-202ENST00000430711 EZH2Q15910 746 aaKnown RBP8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms