RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 ALPK1Q96QP1 1244 aa8.86□□□□□ -0.99
CCDC88A-206ENST00000430086 DSCC1Q9BVC3 393 aa8.86□□□□□ -0.99
CCDC88A-206ENST00000430086 PRDM7Q9NQW5 492 aa8.86□□□□□ -0.99
CCDC88A-206ENST00000430086 PPM1BO75688 479 aa8.85□□□□□ -0.99
CCDC88A-206ENST00000430086 FIBCD1Q8N539 461 aa8.85□□□□□ -0.99
CCDC88A-206ENST00000430086 ZNF513Q8N8E2 541 aaPredicted RBP8.85□□□□□ -0.99
CCDC88A-206ENST00000430086 BRF1Q92994 677 aa8.85□□□□□ -0.99
CCDC88A-206ENST00000430086 RCC1LQ96I51 464 aaKnown RBP8.85□□□□□ -0.99
CCDC88A-206ENST00000430086 APBA2Q99767 749 aa8.85□□□□□ -0.99
CCDC88A-206ENST00000430086 TCFL5Q9UL49 500 aa8.85□□□□□ -0.99
CCDC88A-206ENST00000430086 B2RBV5 119 aa8.84□□□□□ -0.99
CCDC88A-206ENST00000430086 MEIS1O00470 390 aa8.84□□□□□ -0.99
CCDC88A-206ENST00000430086 GJB6O95452 261 aa8.84□□□□□ -0.99
CCDC88A-206ENST00000430086 MRM1Q6IN84 353 aaKnown RBP8.84□□□□□ -0.99
CCDC88A-206ENST00000430086 ADAT2Q7Z6V5 191 aaKnown RBP8.84□□□□□ -0.99
CCDC88A-206ENST00000430086 FGD4Q96M96 766 aa8.84□□□□□ -0.99
CCDC88A-206ENST00000430086 DRC1Q96MC2 740 aa8.84□□□□□ -0.99
CCDC88A-206ENST00000430086 TRIM55Q9BYV6 548 aa8.84□□□□□ -0.99
CCDC88A-206ENST00000430086 FOXP3Q9BZS1 431 aa8.84□□□□□ -0.99
CCDC88A-206ENST00000430086 PPP1R1BQ9UD71 204 aaPredicted RBP8.84□□□□□ -0.99
CCDC88A-206ENST00000430086 SF3B6Q9Y3B4 125 aaKnown RBP8.84□□□□□ -0.99
CCDC88A-206ENST00000430086 SSU72P8A0A1W2PR75 194 aa8.83□□□□□ -1
CCDC88A-206ENST00000430086 ZNF205O95201 554 aa8.83□□□□□ -1
CCDC88A-206ENST00000430086 SYPP08247 313 aa8.83□□□□□ -1
CCDC88A-206ENST00000430086 SOGA3Q5TF21 947 aa8.83□□□□□ -1
CCDC88A-206ENST00000430086 CWF19L1Q69YN2 538 aaKnown RBP8.83□□□□□ -1
CCDC88A-206ENST00000430086 ARHGEF39Q8N4T4 335 aa8.83□□□□□ -1
CCDC88A-206ENST00000430086 NOL6Q9H6R4 1146 aaKnown RBP8.83□□□□□ -1
CCDC88A-206ENST00000430086 RC3H2Q9HBD1 1191 aaKnown RBP8.83□□□□□ -1
CCDC88A-206ENST00000430086 SLAMF8Q9P0V8 285 aa8.83□□□□□ -1
CCDC88A-206ENST00000430086 TMEM59LQ9UK28 342 aa8.83□□□□□ -1
CCDC88A-206ENST00000430086 DNAJC25-GNG10A0A024R161 153 aa8.82□□□□□ -1
CCDC88A-206ENST00000430086 H0Y8X5 98 aa8.82□□□□□ -1
CCDC88A-206ENST00000430086 SUSD5O60279 629 aa8.82□□□□□ -1
CCDC88A-206ENST00000430086 VAV1P15498 845 aa8.82□□□□□ -1
CCDC88A-206ENST00000430086 ENDOUP21128 410 aaKnown RBP8.82□□□□□ -1
CCDC88A-206ENST00000430086 RALGPS1Q5JS13 557 aa8.82□□□□□ -1
CCDC88A-206ENST00000430086 CRTC3Q6UUV7 619 aa8.82□□□□□ -1
CCDC88A-206ENST00000430086 EEPD1Q7L9B9 569 aa8.82□□□□□ -1
CCDC88A-206ENST00000430086 LRRN4CLQ8ND94 238 aa8.82□□□□□ -1
CCDC88A-206ENST00000430086 EPN3Q9H201 632 aa8.82□□□□□ -1
CCDC88A-206ENST00000430086 ADAMTS10Q9H324 1103 aa8.82□□□□□ -1
CCDC88A-206ENST00000430086 ST7Q9NRC1 585 aa8.82□□□□□ -1
CCDC88A-206ENST00000430086 TMEM82A0PJX8 343 aa8.81□□□□□ -1
CCDC88A-206ENST00000430086 GDNFP39905 211 aa8.81□□□□□ -1
CCDC88A-206ENST00000430086 XP32Q5T750 250 aa8.81□□□□□ -1
CCDC88A-206ENST00000430086 ADCY4Q8NFM4 1077 aa8.81□□□□□ -1
CCDC88A-206ENST00000430086 SYTL4Q96C24 671 aaPredicted RBP8.81□□□□□ -1
CCDC88A-206ENST00000430086 C19orf73Q9NVV2 129 aa8.81□□□□□ -1
CCDC88A-206ENST00000430086 APEX2Q9UBZ4 518 aa8.81□□□□□ -1
CCDC88A-206ENST00000430086 CGGBP1Q9UFW8 167 aaPredicted RBP8.81□□□□□ -1
CCDC88A-206ENST00000430086 CTNND2Q9UQB3 1225 aa8.81□□□□□ -1
CCDC88A-206ENST00000430086 MSRB2Q9Y3D2 182 aa8.81□□□□□ -1
CCDC88A-206ENST00000430086 U2SURPO15042 1029 aaKnown RBP8.8□□□□□ -1
CCDC88A-206ENST00000430086 ZGLP1P0C6A0 271 aa8.8□□□□□ -1
CCDC88A-206ENST00000430086 NOP2P46087 812 aaKnown RBP8.8□□□□□ -1
CCDC88A-206ENST00000430086 POU4F1Q01851 419 aa8.8□□□□□ -1
CCDC88A-206ENST00000430086 GRB10Q13322 594 aa8.8□□□□□ -1
CCDC88A-206ENST00000430086 FLAD1Q8NFF5 587 aa8.8□□□□□ -1
CCDC88A-206ENST00000430086 SLC12A9Q9BXP2 914 aa8.8□□□□□ -1
CCDC88A-206ENST00000430086 SIRPGQ9P1W8 387 aa8.8□□□□□ -1
CCDC88A-206ENST00000430086 SUGT1Q9Y2Z0 365 aa8.8□□□□□ -1
CCDC88A-206ENST00000430086 RPL10P27635 214 aaKnown RBP8.79□□□□□ -1
CCDC88A-206ENST00000430086 IRAK1P51617 712 aa8.79□□□□□ -1
CCDC88A-206ENST00000430086 DUSP4Q13115 394 aa8.79□□□□□ -1
CCDC88A-206ENST00000430086 SERINC3Q13530 473 aa8.79□□□□□ -1
CCDC88A-206ENST00000430086 PPP2R5DQ14738 602 aa8.79□□□□□ -1
CCDC88A-206ENST00000430086 ATG4DQ86TL0 474 aaPredicted RBP8.79□□□□□ -1
CCDC88A-206ENST00000430086 CRACR2BQ8N4Y2 399 aaPredicted RBP8.79□□□□□ -1
CCDC88A-206ENST00000430086 BVESQ8NE79 360 aa8.79□□□□□ -1
CCDC88A-206ENST00000430086 LINC01599Q8WXQ3 324 aa8.79□□□□□ -1
CCDC88A-206ENST00000430086 UBXN4Q92575 508 aa8.79□□□□□ -1
CCDC88A-206ENST00000430086 ZDHHC15Q96MV8 337 aa8.79□□□□□ -1
CCDC88A-206ENST00000430086 G6PC3Q9BUM1 346 aa8.79□□□□□ -1
CCDC88A-206ENST00000430086 AKT3Q9Y243 479 aa8.79□□□□□ -1
CCDC88A-206ENST00000430086 EMC9Q9Y3B6 208 aa8.79□□□□□ -1
CCDC88A-206ENST00000430086 RANGAP1P46060 587 aaPredicted RBP8.78□□□□□ -1
CCDC88A-206ENST00000430086 RTP2Q5QGT7 225 aa8.78□□□□□ -1
CCDC88A-206ENST00000430086 POMZP3Q6PJE2 187 aa8.78□□□□□ -1
CCDC88A-206ENST00000430086 WAPLQ7Z5K2 1190 aa8.78□□□□□ -1
CCDC88A-206ENST00000430086 NOP56O00567 594 aaKnown RBP8.77□□□□□ -1.01
CCDC88A-206ENST00000430086 FKTNO75072 461 aa8.77□□□□□ -1.01
CCDC88A-206ENST00000430086 ITGB5P18084 799 aa8.77□□□□□ -1.01
CCDC88A-206ENST00000430086 SLC10A6Q3KNW5 377 aa8.77□□□□□ -1.01
CCDC88A-206ENST00000430086 PDZD8Q8NEN9 1154 aa8.77□□□□□ -1.01
CCDC88A-206ENST00000430086 ST13P5Q8NFI4 369 aaPredicted RBP8.77□□□□□ -1.01
CCDC88A-206ENST00000430086 FCRL2Q96LA5 508 aaPredicted RBP8.77□□□□□ -1.01
CCDC88A-206ENST00000430086 MRGPRX3Q96LB0 322 aa8.77□□□□□ -1.01
CCDC88A-206ENST00000430086 FCRL3Q96P31 734 aaPredicted RBP8.77□□□□□ -1.01
CCDC88A-206ENST00000430086 CCDC113Q9H0I3 377 aa8.77□□□□□ -1.01
CCDC88A-206ENST00000430086 EBF1Q9UH73 591 aa8.77□□□□□ -1.01
CCDC88A-206ENST00000430086 BIN1O00499 593 aa8.76□□□□□ -1.01
CCDC88A-206ENST00000430086 HPXP02790 462 aa8.76□□□□□ -1.01
CCDC88A-206ENST00000430086 HK2P52789 917 aa8.76□□□□□ -1.01
CCDC88A-206ENST00000430086 SV2CQ496J9 727 aa8.76□□□□□ -1.01
CCDC88A-206ENST00000430086 LRP10Q7Z4F1 713 aa8.76□□□□□ -1.01
CCDC88A-206ENST00000430086 TRIM59Q8IWR1 403 aa8.76□□□□□ -1.01
CCDC88A-206ENST00000430086 ANKS4BQ8N8V4 417 aa8.76□□□□□ -1.01
CCDC88A-206ENST00000430086 ZNF669Q96BR6 464 aaPredicted RBP8.76□□□□□ -1.01
CCDC88A-206ENST00000430086 MAP6Q96JE9 813 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms