RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 USP17L2Q6R6M4 530 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 SLC30A10Q6XR72 485 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 TGFBRAP1Q8WUH2 860 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 IFT81Q8WYA0 676 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 CNNM2Q9H8M5 875 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 ABHD10Q9NUJ1 306 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 TMEM260Q9NX78 707 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 ANKIB1Q9P2G1 1089 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 CEP131Q9UPN4 1083 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 LUC7L2Q9Y383 392 aaKnown RBP9.72□□□□□ -0.85
USP40-203ENST00000427112 EPN1Q9Y6I3 576 aaPredicted RBP9.72□□□□□ -0.85
USP40-203ENST00000427112 A0A1B0GTH6 734 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 TBC1D8BQ0IIM8 1120 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 TDRD12Q587J7 1177 aaKnown RBP9.72□□□□□ -0.85
USP40-203ENST00000427112 SGMS1Q86VZ5 419 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 NELFCDQ8IXH7 590 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 CSGALNACT2Q8N6G5 542 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 ANKRD20A12PQ8NF67 263 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 RRP36Q96EU6 259 aaKnown RBP9.72□□□□□ -0.85
USP40-203ENST00000427112 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.72□□□□□ -0.85
USP40-203ENST00000427112 MYO6Q9UM54 1294 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 MYH8P13535 1937 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 ZSCAN5CA6NGD5 496 aaPredicted RBP9.71□□□□□ -0.85
USP40-203ENST00000427112 ZEB2O60315 1214 aa9.71□□□□□ -0.85
USP40-203ENST00000427112 CCNT1O60563 726 aaKnown RBP9.71□□□□□ -0.85
USP40-203ENST00000427112 LIFRP42702 1097 aa9.71□□□□□ -0.85
USP40-203ENST00000427112 GTF2A1P52655 376 aaPredicted RBP9.71□□□□□ -0.85
USP40-203ENST00000427112 MECOMQ03112 1051 aa9.71□□□□□ -0.85
USP40-203ENST00000427112 PDE4DQ08499 809 aa9.71□□□□□ -0.85
USP40-203ENST00000427112 MEX3CQ5U5Q3 659 aaKnown RBP9.71□□□□□ -0.85
USP40-203ENST00000427112 CTR9Q6PD62 1173 aa9.71□□□□□ -0.85
USP40-203ENST00000427112 DZIP1Q86YF9 867 aaKnown RBP9.71□□□□□ -0.85
USP40-203ENST00000427112 IQUBQ8NA54 791 aa9.71□□□□□ -0.85
USP40-203ENST00000427112 MS4A14Q96JA4 679 aa9.71□□□□□ -0.85
USP40-203ENST00000427112 AK7Q96M32 723 aa9.71□□□□□ -0.85
USP40-203ENST00000427112 FOXP1Q9H334 677 aaPredicted RBP9.71□□□□□ -0.85
USP40-203ENST00000427112 ZNF219Q9P2Y4 722 aaPredicted RBP9.71□□□□□ -0.85
USP40-203ENST00000427112 MAGEC2Q9UBF1 373 aaPredicted RBP9.71□□□□□ -0.85
USP40-203ENST00000427112 LRWD1Q9UFC0 647 aa9.71□□□□□ -0.85
USP40-203ENST00000427112 MOCS3O95396 460 aa9.71□□□□□ -0.85
USP40-203ENST00000427112 PIP4K2BP78356 416 aa9.71□□□□□ -0.85
USP40-203ENST00000427112 E2F4Q16254 413 aa9.71□□□□□ -0.85
USP40-203ENST00000427112 CCDC152Q4G0S7 254 aa9.71□□□□□ -0.85
USP40-203ENST00000427112 SPTY2D1Q68D10 685 aaPredicted RBP9.71□□□□□ -0.85
USP40-203ENST00000427112 ANKRD18AQ8IVF6 992 aa9.71□□□□□ -0.85
USP40-203ENST00000427112 ZNF384Q8TF68 577 aa9.71□□□□□ -0.85
USP40-203ENST00000427112 KAT14Q9H8E8 782 aa9.71□□□□□ -0.85
USP40-203ENST00000427112 GUCY2FP51841 1108 aa9.71□□□□□ -0.86
USP40-203ENST00000427112 SNAP25P60880 206 aa9.71□□□□□ -0.86
USP40-203ENST00000427112 ITPK1Q13572 414 aa9.71□□□□□ -0.86
USP40-203ENST00000427112 CAVIN4Q5BKX8 364 aa9.71□□□□□ -0.86
USP40-203ENST00000427112 C2CD5Q86YS7 1000 aa9.71□□□□□ -0.86
USP40-203ENST00000427112 RABGGTAQ92696 567 aa9.71□□□□□ -0.86
USP40-203ENST00000427112 MYO1CO00159 1063 aa9.7□□□□□ -0.86
USP40-203ENST00000427112 PDE2AO00408 941 aaPredicted RBP9.7□□□□□ -0.86
USP40-203ENST00000427112 SND1Q7KZF4 910 aaKnown RBP eCLIP9.7□□□□□ -0.86
USP40-203ENST00000427112 RSRC2Q7L4I2 434 aaKnown RBP9.7□□□□□ -0.86
USP40-203ENST00000427112 SH2D3CQ8N5H7 860 aa9.7□□□□□ -0.86
USP40-203ENST00000427112 LRRC15Q8TF66 581 aa9.7□□□□□ -0.86
USP40-203ENST00000427112 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.7□□□□□ -0.86
USP40-203ENST00000427112 NDUFA10O95299 355 aa9.7□□□□□ -0.86
USP40-203ENST00000427112 IPO7O95373 1038 aaKnown RBP9.7□□□□□ -0.86
USP40-203ENST00000427112 SARSP49591 514 aaKnown RBP9.7□□□□□ -0.86
USP40-203ENST00000427112 STK4Q13043 487 aa9.7□□□□□ -0.86
USP40-203ENST00000427112 TCP11X2Q5H9J9 407 aa9.7□□□□□ -0.86
USP40-203ENST00000427112 BEND6Q5SZJ8 279 aaPredicted RBP9.7□□□□□ -0.86
USP40-203ENST00000427112 NFRKBQ6P4R8 1299 aa9.7□□□□□ -0.86
USP40-203ENST00000427112 APTXQ7Z2E3 356 aaKnown RBP9.7□□□□□ -0.86
USP40-203ENST00000427112 COA7Q96BR5 231 aa9.7□□□□□ -0.86
USP40-203ENST00000427112 RNF41Q9H4P4 317 aaPredicted RBP9.7□□□□□ -0.86
USP40-203ENST00000427112 REXO2Q9Y3B8 237 aaKnown RBP9.7□□□□□ -0.86
USP40-203ENST00000427112 EPHB6O15197 1021 aa9.7□□□□□ -0.86
USP40-203ENST00000427112 RNF40O75150 1001 aa9.7□□□□□ -0.86
USP40-203ENST00000427112 IL6STP40189 918 aaPredicted RBP9.7□□□□□ -0.86
USP40-203ENST00000427112 ADAT2Q7Z6V5 191 aaKnown RBP9.7□□□□□ -0.86
USP40-203ENST00000427112 JAKMIP2Q96AA8 810 aa9.7□□□□□ -0.86
USP40-203ENST00000427112 GPCPD1Q9NPB8 672 aa9.7□□□□□ -0.86
USP40-203ENST00000427112 FEZ2Q9UHY8 353 aaPredicted RBP9.7□□□□□ -0.86
USP40-203ENST00000427112 NWD2Q9ULI1 1742 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 CRYBG1Q9Y4K1 1723 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 MYH2Q9UKX2 1941 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 FAM196BA6NMK8 535 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 SCG2P13521 617 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 ARID4AP29374 1257 aaPredicted RBP9.69□□□□□ -0.86
USP40-203ENST00000427112 TBC1D10BQ4KMP7 808 aaPredicted RBP9.69□□□□□ -0.86
USP40-203ENST00000427112 HDXQ7Z353 690 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 COG1Q8WTW3 980 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 STAG1Q8WVM7 1258 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 NOC4LQ9BVI4 516 aaKnown RBP9.69□□□□□ -0.86
USP40-203ENST00000427112 POTEMA6NI47 508 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 AKR1B10O60218 316 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 TSPY3P0CV98 308 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 TSPY8P0CW00 308 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 GGCXP38435 758 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 LIG3P49916 1009 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 NAPAP54920 295 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 TROAPQ12815 778 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 TRADDQ15628 312 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 DTHD1Q6ZMT9 781 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 CNGA4Q8IV77 575 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms