RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 SNX14Q9Y5W7 946 aa21.87■■□□□ 1.09
PTCD3-204ENST00000418628 SH2B2O14492 632 aaPredicted RBP21.86■■□□□ 1.09
PTCD3-204ENST00000418628 IFIT3O14879 490 aaKnown RBP21.86■■□□□ 1.09
PTCD3-204ENST00000418628 PRC1O43663 620 aa21.86■■□□□ 1.09
PTCD3-204ENST00000418628 FDX1P10109 184 aa21.86■■□□□ 1.09
PTCD3-204ENST00000418628 ZKSCAN1P17029 563 aaPredicted RBP21.86■■□□□ 1.09
PTCD3-204ENST00000418628 OAZ1P54368 228 aa21.86■■□□□ 1.09
PTCD3-204ENST00000418628 SART3Q15020 963 aaKnown RBP21.86■■□□□ 1.09
PTCD3-204ENST00000418628 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.86■■□□□ 1.09
PTCD3-204ENST00000418628 GPR142Q7Z601 462 aa21.86■■□□□ 1.09
PTCD3-204ENST00000418628 RIOX2Q8IUF8 465 aa21.86■■□□□ 1.09
PTCD3-204ENST00000418628 CHURC1Q8WUH1 139 aa21.86■■□□□ 1.09
PTCD3-204ENST00000418628 USP6NLQ92738 828 aa21.86■■□□□ 1.09
PTCD3-204ENST00000418628 TMEM87BQ96K49 555 aa21.86■■□□□ 1.09
PTCD3-204ENST00000418628 GABRQQ9UN88 632 aa21.86■■□□□ 1.09
PTCD3-204ENST00000418628 PTCH2Q9Y6C5 1203 aa21.86■■□□□ 1.09
PTCD3-204ENST00000418628 ZNF536O15090 1300 aa21.85■■□□□ 1.09
PTCD3-204ENST00000418628 EXOSC10Q01780 885 aaKnown RBP21.85■■□□□ 1.09
PTCD3-204ENST00000418628 IRF5Q13568 498 aa21.85■■□□□ 1.09
PTCD3-204ENST00000418628 CCDC96Q2M329 555 aa21.85■■□□□ 1.09
PTCD3-204ENST00000418628 C8orf34Q49A92 452 aa21.85■■□□□ 1.09
PTCD3-204ENST00000418628 MORN1Q5T089 497 aa21.85■■□□□ 1.09
PTCD3-204ENST00000418628 GPATCH4Q5T3I0 446 aaKnown RBP21.85■■□□□ 1.09
PTCD3-204ENST00000418628 TTBK2Q6IQ55 1244 aa21.85■■□□□ 1.09
PTCD3-204ENST00000418628 KIFC2Q96AC6 838 aa21.85■■□□□ 1.09
PTCD3-204ENST00000418628 NEK1Q96PY6 1258 aa21.85■■□□□ 1.09
PTCD3-204ENST00000418628 PRR12Q9ULL5 1215 aa21.85■■□□□ 1.09
PTCD3-204ENST00000418628 FRMPD2Q68DX3 1309 aaPredicted RBP21.84■■□□□ 1.09
PTCD3-204ENST00000418628 ECM2O94769 699 aaPredicted RBP21.84■■□□□ 1.09
PTCD3-204ENST00000418628 HOXD10P28358 340 aa21.84■■□□□ 1.09
PTCD3-204ENST00000418628 LIFRP42702 1097 aa21.84■■□□□ 1.09
PTCD3-204ENST00000418628 TROAPQ12815 778 aa21.84■■□□□ 1.09
PTCD3-204ENST00000418628 GRB14Q14449 540 aa21.84■■□□□ 1.09
PTCD3-204ENST00000418628 WTAPQ15007 396 aa21.84■■□□□ 1.09
PTCD3-204ENST00000418628 ASPRV1Q53RT3 343 aa21.84■■□□□ 1.09
PTCD3-204ENST00000418628 TMEM67Q5HYA8 995 aa21.84■■□□□ 1.09
PTCD3-204ENST00000418628 COA7Q96BR5 231 aa21.84■■□□□ 1.09
PTCD3-204ENST00000418628 TEX13BQ9BXU2 312 aa21.84■■□□□ 1.09
PTCD3-204ENST00000418628 RANBP17Q9H2T7 1088 aaKnown RBP21.84■■□□□ 1.09
PTCD3-204ENST00000418628 GPHNQ9NQX3 736 aaPredicted RBP21.84■■□□□ 1.09
PTCD3-204ENST00000418628 HPS5Q9UPZ3 1129 aa21.84■■□□□ 1.09
PTCD3-204ENST00000418628 MTMR7Q9Y216 660 aa21.84■■□□□ 1.09
PTCD3-204ENST00000418628 ERICH2A1L162 156 aa21.83■■□□□ 1.09
PTCD3-204ENST00000418628 ERCC3P19447 782 aa21.83■■□□□ 1.09
PTCD3-204ENST00000418628 FLT3LGP49771 235 aa21.83■■□□□ 1.09
PTCD3-204ENST00000418628 PLEKHH3Q7Z736 793 aa21.83■■□□□ 1.09
PTCD3-204ENST00000418628 SGMS1Q86VZ5 419 aa21.83■■□□□ 1.09
PTCD3-204ENST00000418628 SOCS4Q8WXH5 440 aa21.83■■□□□ 1.09
PTCD3-204ENST00000418628 IL17RAQ96F46 866 aa21.83■■□□□ 1.09
PTCD3-204ENST00000418628 ABHD8Q96I13 439 aa21.83■■□□□ 1.09
PTCD3-204ENST00000418628 GTF3C3Q9Y5Q9 886 aa21.83■■□□□ 1.09
PTCD3-204ENST00000418628 BRCA2P51587 3418 aa21.83■■□□□ 1.09
PTCD3-204ENST00000418628 SLC25A27O95847 323 aa21.82■■□□□ 1.08
PTCD3-204ENST00000418628 COPB2P35606 906 aa21.82■■□□□ 1.08
PTCD3-204ENST00000418628 STAT3P40763 770 aa21.82■■□□□ 1.08
PTCD3-204ENST00000418628 GRM4Q14833 912 aa21.82■■□□□ 1.08
PTCD3-204ENST00000418628 SYDE2Q5VT97 1194 aa21.82■■□□□ 1.08
PTCD3-204ENST00000418628 SAMD1Q6SPF0 538 aaPredicted RBP21.82■■□□□ 1.08
PTCD3-204ENST00000418628 DHX32Q7L7V1 743 aaKnown RBP21.82■■□□□ 1.08
PTCD3-204ENST00000418628 ARMC5Q96C12 935 aa21.82■■□□□ 1.08
PTCD3-204ENST00000418628 CHMP4CQ96CF2 233 aa21.82■■□□□ 1.08
PTCD3-204ENST00000418628 MROH8Q9H579 483 aa21.82■■□□□ 1.08
PTCD3-204ENST00000418628 MAD2L2Q9UI95 211 aa21.82■■□□□ 1.08
PTCD3-204ENST00000418628 PALM3A6NDB9 673 aaPredicted RBP21.81■■□□□ 1.08
PTCD3-204ENST00000418628 PTPREP23469 700 aa21.81■■□□□ 1.08
PTCD3-204ENST00000418628 FBXL16Q8N461 479 aa21.81■■□□□ 1.08
PTCD3-204ENST00000418628 MAP3K14Q99558 947 aa21.81■■□□□ 1.08
PTCD3-204ENST00000418628 GPCPD1Q9NPB8 672 aa21.81■■□□□ 1.08
PTCD3-204ENST00000418628 SLC15A5A6NIM6 579 aa21.8■■□□□ 1.08
PTCD3-204ENST00000418628 ZBED4O75132 1171 aa21.8■■□□□ 1.08
PTCD3-204ENST00000418628 DDAH1O94760 285 aa21.8■■□□□ 1.08
PTCD3-204ENST00000418628 HMGB1P09429 215 aaKnown RBP21.8■■□□□ 1.08
PTCD3-204ENST00000418628 HOXC6P09630 235 aa21.8■■□□□ 1.08
PTCD3-204ENST00000418628 PARP1P09874 1014 aaKnown RBP21.8■■□□□ 1.08
PTCD3-204ENST00000418628 GOLGA8HP0CJ92 632 aa21.8■■□□□ 1.08
PTCD3-204ENST00000418628 SLC16A2P36021 539 aa21.8■■□□□ 1.08
PTCD3-204ENST00000418628 PLS1Q14651 629 aa21.8■■□□□ 1.08
PTCD3-204ENST00000418628 SNRNP48Q6IEG0 339 aaKnown RBP21.8■■□□□ 1.08
PTCD3-204ENST00000418628 ABRAQ8N0Z2 381 aa21.8■■□□□ 1.08
PTCD3-204ENST00000418628 STAG2Q8N3U4 1231 aa21.8■■□□□ 1.08
PTCD3-204ENST00000418628 PXYLP1Q8TE99 480 aa21.8■■□□□ 1.08
PTCD3-204ENST00000418628 AGXT2Q9BYV1 514 aa21.8■■□□□ 1.08
PTCD3-204ENST00000418628 RIPK3Q9Y572 518 aa21.8■■□□□ 1.08
PTCD3-204ENST00000418628 SEC24BO95487 1268 aa21.79■■□□□ 1.08
PTCD3-204ENST00000418628 IGHA2P01877 340 aa21.79■■□□□ 1.08
PTCD3-204ENST00000418628 XRCC5P13010 732 aaKnown RBP21.79■■□□□ 1.08
PTCD3-204ENST00000418628 IKQ13123 557 aaPredicted RBP21.79■■□□□ 1.08
PTCD3-204ENST00000418628 SLC35G1Q2M3R5 365 aa21.79■■□□□ 1.08
PTCD3-204ENST00000418628 ZNF654Q8IZM8 581 aa21.79■■□□□ 1.08
PTCD3-204ENST00000418628 TMTC2Q8N394 836 aa21.79■■□□□ 1.08
PTCD3-204ENST00000418628 JAKMIP1Q96N16 626 aaKnown RBP21.79■■□□□ 1.08
PTCD3-204ENST00000418628 NUDT12Q9BQG2 462 aa21.79■■□□□ 1.08
PTCD3-204ENST00000418628 LRRC2Q9BYS8 371 aa21.79■■□□□ 1.08
PTCD3-204ENST00000418628 RAVER2Q9HCJ3 691 aaKnown RBP21.79■■□□□ 1.08
PTCD3-204ENST00000418628 ISY1Q9ULR0 285 aaKnown RBP21.79■■□□□ 1.08
PTCD3-204ENST00000418628 STRNO43815 780 aa21.78■■□□□ 1.08
PTCD3-204ENST00000418628 EIF5BO60841 1220 aaKnown RBP21.78■■□□□ 1.08
PTCD3-204ENST00000418628 ICAM1P05362 532 aa21.78■■□□□ 1.08
PTCD3-204ENST00000418628 MAP2K5Q13163 448 aa21.78■■□□□ 1.08
PTCD3-204ENST00000418628 NCAPG2Q86XI2 1143 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms