RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 DUSP15Q9H1R2 295 aaPredicted RBP6.76□□□□□ -1.33
VPS54-204ENST00000416400 CHST7Q9NS84 486 aa6.76□□□□□ -1.33
VPS54-204ENST00000416400 SEMA3GQ9NS98 782 aa6.76□□□□□ -1.33
VPS54-204ENST00000416400 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.76□□□□□ -1.33
VPS54-204ENST00000416400 COL17A1Q9UMD9 1497 aaPredicted RBP6.76□□□□□ -1.33
VPS54-204ENST00000416400 SBNO2Q9Y2G9 1366 aa6.75□□□□□ -1.33
VPS54-204ENST00000416400 SIGLEC6O43699 453 aa6.75□□□□□ -1.33
VPS54-204ENST00000416400 PPM1BO75688 479 aa6.75□□□□□ -1.33
VPS54-204ENST00000416400 CD8BP10966 210 aa6.75□□□□□ -1.33
VPS54-204ENST00000416400 PLCL1Q15111 1095 aa6.75□□□□□ -1.33
VPS54-204ENST00000416400 ANKRD39Q53RE8 183 aa6.75□□□□□ -1.33
VPS54-204ENST00000416400 AXDND1Q5T1B0 1012 aaPredicted RBP6.75□□□□□ -1.33
VPS54-204ENST00000416400 DCAF15Q66K64 600 aa6.75□□□□□ -1.33
VPS54-204ENST00000416400 CWF19L1Q69YN2 538 aaKnown RBP6.75□□□□□ -1.33
VPS54-204ENST00000416400 MRM1Q6IN84 353 aaKnown RBP6.75□□□□□ -1.33
VPS54-204ENST00000416400 PPFIBP1Q86W92 1011 aa6.75□□□□□ -1.33
VPS54-204ENST00000416400 LILRB2Q8N423 598 aa6.75□□□□□ -1.33
VPS54-204ENST00000416400 ZNF655Q8N720 491 aaPredicted RBP6.75□□□□□ -1.33
VPS54-204ENST00000416400 PI4K2BQ8TCG2 481 aa6.75□□□□□ -1.33
VPS54-204ENST00000416400 SYTL5Q8TDW5 730 aaPredicted RBP6.75□□□□□ -1.33
VPS54-204ENST00000416400 HAUS7Q99871 368 aa6.75□□□□□ -1.33
VPS54-204ENST00000416400 GFOD1Q9NXC2 390 aa6.75□□□□□ -1.33
VPS54-204ENST00000416400 PRR13Q9NZ81 148 aa6.75□□□□□ -1.33
VPS54-204ENST00000416400 LMCD1Q9NZU5 365 aa6.75□□□□□ -1.33
VPS54-204ENST00000416400 SUGT1Q9Y2Z0 365 aa6.75□□□□□ -1.33
VPS54-204ENST00000416400 CDC45O75419 566 aa6.74□□□□□ -1.33
VPS54-204ENST00000416400 PRAMEF1O95521 474 aa6.74□□□□□ -1.33
VPS54-204ENST00000416400 SRFP11831 508 aa6.74□□□□□ -1.33
VPS54-204ENST00000416400 CD247P20963 164 aa6.74□□□□□ -1.33
VPS54-204ENST00000416400 ZP2Q05996 745 aa6.74□□□□□ -1.33
VPS54-204ENST00000416400 SNW1Q13573 536 aaKnown RBP6.74□□□□□ -1.33
VPS54-204ENST00000416400 ZNF574Q6ZN55 896 aaPredicted RBP6.74□□□□□ -1.33
VPS54-204ENST00000416400 TMC3Q7Z5M5 1100 aa6.74□□□□□ -1.33
VPS54-204ENST00000416400 DAGLBQ8NCG7 672 aa6.74□□□□□ -1.33
VPS54-204ENST00000416400 ZNF669Q96BR6 464 aaPredicted RBP6.74□□□□□ -1.33
VPS54-204ENST00000416400 APBA2Q99767 749 aa6.74□□□□□ -1.33
VPS54-204ENST00000416400 GP6Q9HCN6 339 aa6.74□□□□□ -1.33
VPS54-204ENST00000416400 PFDN2Q9UHV9 154 aa6.74□□□□□ -1.33
VPS54-204ENST00000416400 ANKRD34BA5PLL1 514 aa6.73□□□□□ -1.33
VPS54-204ENST00000416400 MEIS1O00470 390 aa6.73□□□□□ -1.33
VPS54-204ENST00000416400 SUSD5O60279 629 aa6.73□□□□□ -1.33
VPS54-204ENST00000416400 CD96P40200 585 aa6.73□□□□□ -1.33
VPS54-204ENST00000416400 PCBP3P57721 371 aaKnown RBP6.73□□□□□ -1.33
VPS54-204ENST00000416400 SSRP1Q08945 709 aaKnown RBP6.73□□□□□ -1.33
VPS54-204ENST00000416400 C2orf27AQ580R0 203 aa6.73□□□□□ -1.33
VPS54-204ENST00000416400 SPATC1Q76KD6 591 aa6.73□□□□□ -1.33
VPS54-204ENST00000416400 SPRED2Q7Z698 418 aa6.73□□□□□ -1.33
VPS54-204ENST00000416400 THAP3Q8WTV1 239 aaPredicted RBP6.73□□□□□ -1.33
VPS54-204ENST00000416400 KLHL6Q8WZ60 621 aa6.73□□□□□ -1.33
VPS54-204ENST00000416400 APPBP2Q92624 585 aa6.73□□□□□ -1.33
VPS54-204ENST00000416400 PPP1R14AQ96A00 147 aa6.73□□□□□ -1.33
VPS54-204ENST00000416400 CCDC120Q96HB5 630 aa6.73□□□□□ -1.33
VPS54-204ENST00000416400 KANSL2Q9H9L4 492 aa6.73□□□□□ -1.33
VPS54-204ENST00000416400 CARS2Q9HA77 564 aaKnown RBP6.73□□□□□ -1.33
VPS54-204ENST00000416400 FANCLQ9NW38 375 aa6.73□□□□□ -1.33
VPS54-204ENST00000416400 WHRNQ9P202 907 aa6.73□□□□□ -1.33
VPS54-204ENST00000416400 SF3B6Q9Y3B4 125 aaKnown RBP6.73□□□□□ -1.33
VPS54-204ENST00000416400 ZNF451Q9Y4E5 1061 aa6.73□□□□□ -1.33
VPS54-204ENST00000416400 KDM2BQ8NHM5 1336 aa6.73□□□□□ -1.33
VPS54-204ENST00000416400 ESYT3A0FGR9 886 aa6.72□□□□□ -1.33
VPS54-204ENST00000416400 SHISA3A0PJX4 238 aa6.72□□□□□ -1.33
VPS54-204ENST00000416400 EPHX1P07099 455 aa6.72□□□□□ -1.33
VPS54-204ENST00000416400 ZNF143P52747 638 aaPredicted RBP6.72□□□□□ -1.33
VPS54-204ENST00000416400 GP2P55259 537 aaKnown RBP6.72□□□□□ -1.33
VPS54-204ENST00000416400 EGR3Q06889 387 aa6.72□□□□□ -1.33
VPS54-204ENST00000416400 PLEKHG4Q58EX7 1191 aa6.72□□□□□ -1.33
VPS54-204ENST00000416400 HOMER1Q86YM7 354 aa6.72□□□□□ -1.33
VPS54-204ENST00000416400 CRACR2BQ8N4Y2 399 aaPredicted RBP6.72□□□□□ -1.33
VPS54-204ENST00000416400 BRF1Q92994 677 aa6.72□□□□□ -1.33
VPS54-204ENST00000416400 FGD4Q96M96 766 aa6.72□□□□□ -1.33
VPS54-204ENST00000416400 EPN3Q9H201 632 aa6.72□□□□□ -1.33
VPS54-204ENST00000416400 PAK6Q9NQU5 681 aaPredicted RBP6.72□□□□□ -1.33
VPS54-204ENST00000416400 LRP2BPQ9P2M1 347 aa6.72□□□□□ -1.33
VPS54-204ENST00000416400 ZMYM5Q9UJ78 669 aa6.72□□□□□ -1.33
VPS54-204ENST00000416400 DIS3Q9Y2L1 958 aaKnown RBP6.72□□□□□ -1.33
VPS54-204ENST00000416400 FHOD1Q9Y613 1164 aa6.72□□□□□ -1.33
VPS54-204ENST00000416400 A0A087WZG4 1122 aa6.71□□□□□ -1.34
VPS54-204ENST00000416400 WASH4PA8MWX3 477 aa6.71□□□□□ -1.34
VPS54-204ENST00000416400 AGRPO00253 132 aa6.71□□□□□ -1.34
VPS54-204ENST00000416400 NOP56O00567 594 aaKnown RBP6.71□□□□□ -1.34
VPS54-204ENST00000416400 DIAPH1O60610 1272 aaKnown RBP6.71□□□□□ -1.34
VPS54-204ENST00000416400 GSNP06396 782 aa6.71□□□□□ -1.34
VPS54-204ENST00000416400 ENDOUP21128 410 aaKnown RBP6.71□□□□□ -1.34
VPS54-204ENST00000416400 FUT4P22083 530 aa6.71□□□□□ -1.34
VPS54-204ENST00000416400 NOP2P46087 812 aaKnown RBP6.71□□□□□ -1.34
VPS54-204ENST00000416400 SLC10A6Q3KNW5 377 aa6.71□□□□□ -1.34
VPS54-204ENST00000416400 SLC23A3Q6PIS1 610 aa6.71□□□□□ -1.34
VPS54-204ENST00000416400 RNF111Q6ZNA4 994 aa6.71□□□□□ -1.34
VPS54-204ENST00000416400 FIBCD1Q8N539 461 aa6.71□□□□□ -1.34
VPS54-204ENST00000416400 TCTN2Q96GX1 697 aa6.71□□□□□ -1.34
VPS54-204ENST00000416400 HDAC8Q9BY41 377 aa6.71□□□□□ -1.34
VPS54-204ENST00000416400 NOL6Q9H6R4 1146 aaKnown RBP6.71□□□□□ -1.34
VPS54-204ENST00000416400 TMEM260Q9NX78 707 aa6.71□□□□□ -1.34
VPS54-204ENST00000416400 IQCA1LA6NCM1 817 aa6.7□□□□□ -1.34
VPS54-204ENST00000416400 PPM1GO15355 546 aaPredicted RBP6.7□□□□□ -1.34
VPS54-204ENST00000416400 SYPP08247 313 aa6.7□□□□□ -1.34
VPS54-204ENST00000416400 ZNF445P59923 1031 aa6.7□□□□□ -1.34
VPS54-204ENST00000416400 PPP2R5DQ14738 602 aa6.7□□□□□ -1.34
VPS54-204ENST00000416400 GAB4Q2WGN9 574 aa6.7□□□□□ -1.34
VPS54-204ENST00000416400 SV2CQ496J9 727 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms