RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 TMEM179Q6ZVK1 233 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 MICALCLQ6ZW33 695 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 MYCT1Q8N699 235 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 NRXN3Q9Y4C0 1643 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 STK36Q9NRP7 1315 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 ARHGAP6O43182 974 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 CHMP2AO43633 222 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 OSBPP22059 807 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 MECOMQ03112 1051 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 KIF22Q14807 665 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 DCAF17Q5H9S7 520 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-205ENST00000414879 GOLGA1Q92805 767 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 CNTNAP4Q9C0A0 1308 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 TMEM232C9JQI7 657 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 P4HA1P13674 534 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 PFKFB1P16118 471 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 BIRC3Q13489 604 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 ARMC9Q7Z3E5 817 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 NSUN7Q8NE18 718 aaKnown RBP13.31□□□□□ -0.28
PTPRF-205ENST00000414879 GSDMAQ96QA5 445 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 BIN2Q9UBW5 565 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-205ENST00000414879 NOD1Q9Y239 953 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 NFE2L3Q9Y4A8 694 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 FDX1P10109 184 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 BMP3P12645 472 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 FAM160B1Q5W0V3 765 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 RASEFQ8IZ41 740 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 LCORLQ8N3X6 602 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 ARHGEF1Q92888 912 aaKnown RBP13.31□□□□□ -0.28
PTPRF-205ENST00000414879 PLIN2Q99541 437 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 BEGAINQ9BUH8 593 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 DDX25Q9UHL0 483 aaKnown RBP13.31□□□□□ -0.28
PTPRF-205ENST00000414879 SPATA31A5Q5VU36 1347 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 SPATA31A7Q8IWB4 1347 aa13.31□□□□□ -0.28
PTPRF-205ENST00000414879 TNFAIP3P21580 790 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 MYOCDQ8IZQ8 938 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 DCAF4Q8WV16 495 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 USP28Q96RU2 1077 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 NRBP2Q9NSY0 501 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 STK17AQ9UEE5 414 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 ZNF75DP51815 510 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 ZBTB8OSQ8IWT0 167 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 SREK1Q8WXA9 508 aaKnown RBP13.3□□□□□ -0.28
PTPRF-205ENST00000414879 IKBKGQ9Y6K9 419 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 SETD1AO15047 1707 aaKnown RBP13.3□□□□□ -0.28
PTPRF-205ENST00000414879 TXNRD1Q16881 649 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 KRBA2Q6ZNG9 492 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 ZNF589Q86UQ0 364 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-205ENST00000414879 MRPL44Q9H9J2 332 aaKnown RBP13.3□□□□□ -0.28
PTPRF-205ENST00000414879 CBX8Q9HC52 389 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 ARFGAP3Q9NP61 516 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 HSF2BPO75031 334 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 FLOT1O75955 427 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 ASNSP08243 561 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 GAP43P17677 238 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 ASIC2Q16515 512 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 PPP1R18Q6NYC8 613 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 NELFBQ8WX92 580 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 PUS7LQ9H0K6 701 aaKnown RBP13.3□□□□□ -0.28
PTPRF-205ENST00000414879 PIH1D3Q9NQM4 214 aaKnown RBP13.3□□□□□ -0.28
PTPRF-205ENST00000414879 CCPG1Q9ULG6 757 aa13.3□□□□□ -0.28
PTPRF-205ENST00000414879 EXOC3O60645 756 aa13.29□□□□□ -0.28
PTPRF-205ENST00000414879 ALAS1P13196 640 aa13.29□□□□□ -0.28
PTPRF-205ENST00000414879 MCAMP43121 646 aa13.29□□□□□ -0.28
PTPRF-205ENST00000414879 PPP2R5AQ15172 486 aa13.29□□□□□ -0.28
PTPRF-205ENST00000414879 FAM81BQ96LP2 452 aa13.29□□□□□ -0.28
PTPRF-205ENST00000414879 TSNARE1Q96NA8 513 aa13.29□□□□□ -0.28
PTPRF-205ENST00000414879 ANTXR1Q9H6X2 564 aa13.29□□□□□ -0.28
PTPRF-205ENST00000414879 PNPLA7Q6ZV29 1317 aa13.29□□□□□ -0.28
PTPRF-205ENST00000414879 ARL6IP4Q66PJ3 421 aaKnown RBP13.29□□□□□ -0.28
PTPRF-205ENST00000414879 PLA2G4DQ86XP0 818 aa13.29□□□□□ -0.28
PTPRF-205ENST00000414879 ZNF34Q8IZ26 560 aa13.29□□□□□ -0.28
PTPRF-205ENST00000414879 LRRC47Q8N1G4 583 aaKnown RBP13.29□□□□□ -0.28
PTPRF-205ENST00000414879 ATP6V0A1Q93050 837 aa13.29□□□□□ -0.28
PTPRF-205ENST00000414879 SPDYE4A6NLX3 237 aa13.29□□□□□ -0.28
PTPRF-205ENST00000414879 OPA1O60313 960 aa13.29□□□□□ -0.28
PTPRF-205ENST00000414879 ERCC5P28715 1186 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-205ENST00000414879 IREB2P48200 963 aaKnown RBP13.29□□□□□ -0.28
PTPRF-205ENST00000414879 CD209Q9NNX6 404 aa13.29□□□□□ -0.28
PTPRF-205ENST00000414879 BTBD18B2RXH4 712 aa13.29□□□□□ -0.28
PTPRF-205ENST00000414879 SEMA3FQ13275 785 aa13.29□□□□□ -0.28
PTPRF-205ENST00000414879 TSGA10IPQ3SY00 556 aa13.29□□□□□ -0.28
PTPRF-205ENST00000414879 ZNF408Q9H9D4 720 aa13.29□□□□□ -0.28
PTPRF-205ENST00000414879 SERTAD1Q9UHV2 236 aa13.29□□□□□ -0.28
PTPRF-205ENST00000414879 USP17L8P0C7I0 530 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 INF2Q27J81 1249 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 MMP1P03956 469 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 DNA2P51530 1060 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 MAP3K9P80192 1104 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 SP4Q02446 784 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 AP3B2Q13367 1082 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 RAPGEF1Q13905 1077 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 SYCE1Q8N0S2 351 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 ANKRD35Q8N283 1001 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 MIS12Q9H081 205 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 MLXIPQ9HAP2 919 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 RCOR1Q9UKL0 485 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 GCNT3O95395 438 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 FOXO4P98177 505 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 KCTD2Q14681 263 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms