RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 CLEC10AQ8IUN9 316 aa13.08□□□□□ -0.32
LINC00539-201ENST00000411525 ZNF112Q9UJU3 913 aa13.08□□□□□ -0.32
LINC00539-201ENST00000411525 MTMR6Q9Y217 621 aa13.08□□□□□ -0.32
LINC00539-201ENST00000411525 MGAMO43451 1857 aa13.08□□□□□ -0.32
LINC00539-201ENST00000411525 MYH6P13533 1939 aa13.07□□□□□ -0.32
LINC00539-201ENST00000411525 INPP5BP32019 993 aa13.07□□□□□ -0.32
LINC00539-201ENST00000411525 MAP3K10Q02779 954 aa13.07□□□□□ -0.32
LINC00539-201ENST00000411525 ICA1Q05084 483 aa13.07□□□□□ -0.32
LINC00539-201ENST00000411525 SHROOM1Q2M3G4 852 aaPredicted RBP13.07□□□□□ -0.32
LINC00539-201ENST00000411525 HABP4Q5JVS0 413 aaKnown RBP13.07□□□□□ -0.32
LINC00539-201ENST00000411525 NOL9Q5SY16 702 aaKnown RBP13.07□□□□□ -0.32
LINC00539-201ENST00000411525 FOXD4L5Q5VV16 416 aaPredicted RBP13.07□□□□□ -0.32
LINC00539-201ENST00000411525 C17orf99Q6UX52 265 aa13.07□□□□□ -0.32
LINC00539-201ENST00000411525 TRIM22Q8IYM9 498 aa13.07□□□□□ -0.32
LINC00539-201ENST00000411525 LRRC47Q8N1G4 583 aaKnown RBP13.07□□□□□ -0.32
LINC00539-201ENST00000411525 FOXD4L4Q8WXT5 416 aaPredicted RBP13.07□□□□□ -0.32
LINC00539-201ENST00000411525 PHKBQ93100 1093 aa13.07□□□□□ -0.32
LINC00539-201ENST00000411525 GBP4Q96PP9 640 aa13.07□□□□□ -0.32
LINC00539-201ENST00000411525 SLC26A6Q9BXS9 759 aa13.07□□□□□ -0.32
LINC00539-201ENST00000411525 KANSL2Q9H9L4 492 aa13.07□□□□□ -0.32
LINC00539-201ENST00000411525 CABP5Q9NP86 173 aa13.07□□□□□ -0.32
LINC00539-201ENST00000411525 KCNH4Q9UQ05 1017 aa13.07□□□□□ -0.32
LINC00539-201ENST00000411525 CNTNAP5Q8WYK1 1306 aa13.07□□□□□ -0.32
LINC00539-201ENST00000411525 ZSWIM8A7E2V4 1837 aa13.06□□□□□ -0.32
LINC00539-201ENST00000411525 H3BQV1 296 aa13.06□□□□□ -0.32
LINC00539-201ENST00000411525 PDHXO00330 501 aa13.06□□□□□ -0.32
LINC00539-201ENST00000411525 CXCL11O14625 94 aa13.06□□□□□ -0.32
LINC00539-201ENST00000411525 PLEKHA8P1O95397 391 aa13.06□□□□□ -0.32
LINC00539-201ENST00000411525 F13A1P00488 732 aa13.06□□□□□ -0.32
LINC00539-201ENST00000411525 GH2P01242 217 aa13.06□□□□□ -0.32
LINC00539-201ENST00000411525 GNAQP50148 359 aa13.06□□□□□ -0.32
LINC00539-201ENST00000411525 FOSBP53539 338 aa13.06□□□□□ -0.32
LINC00539-201ENST00000411525 RRP1BQ14684 758 aaKnown RBP13.06□□□□□ -0.32
LINC00539-201ENST00000411525 SEPT2Q15019 361 aa13.06□□□□□ -0.32
LINC00539-201ENST00000411525 RNF26Q9BY78 433 aaPredicted RBP13.06□□□□□ -0.32
LINC00539-201ENST00000411525 NYAP2Q9P242 653 aa13.06□□□□□ -0.32
LINC00539-201ENST00000411525 ZBTB21Q9ULJ3 1066 aa13.06□□□□□ -0.32
LINC00539-201ENST00000411525 DOCK1Q14185 1865 aa13.06□□□□□ -0.32
LINC00539-201ENST00000411525 DEXIO95424 95 aa13.05□□□□□ -0.32
LINC00539-201ENST00000411525 PARP1P09874 1014 aaKnown RBP13.05□□□□□ -0.32
LINC00539-201ENST00000411525 EEF2P13639 858 aaKnown RBP13.05□□□□□ -0.32
LINC00539-201ENST00000411525 GUCY1A2P33402 732 aa13.05□□□□□ -0.32
LINC00539-201ENST00000411525 PSMC4P43686 418 aa13.05□□□□□ -0.32
LINC00539-201ENST00000411525 ATP2B2Q01814 1243 aa13.05□□□□□ -0.32
LINC00539-201ENST00000411525 FUT2Q10981 343 aa13.05□□□□□ -0.32
LINC00539-201ENST00000411525 NFKBIBQ15653 356 aa13.05□□□□□ -0.32
LINC00539-201ENST00000411525 CLEC17AQ6ZS10 378 aa13.05□□□□□ -0.32
LINC00539-201ENST00000411525 CMTR1Q8N1G2 835 aaKnown RBP13.05□□□□□ -0.32
LINC00539-201ENST00000411525 RGS22Q8NE09 1264 aa13.05□□□□□ -0.32
LINC00539-201ENST00000411525 WASF1Q92558 559 aa13.05□□□□□ -0.32
LINC00539-201ENST00000411525 C8orf76Q96K31 380 aa13.05□□□□□ -0.32
LINC00539-201ENST00000411525 PARK7Q99497 189 aaKnown RBP13.05□□□□□ -0.32
LINC00539-201ENST00000411525 ALG1Q9BT22 464 aa13.05□□□□□ -0.32
LINC00539-201ENST00000411525 ARHGAP39Q9C0H5 1083 aa13.05□□□□□ -0.32
LINC00539-201ENST00000411525 CLIP2Q9UDT6 1046 aa13.05□□□□□ -0.32
LINC00539-201ENST00000411525 SRRDQ9UH36 339 aa13.05□□□□□ -0.32
LINC00539-201ENST00000411525 MAD2L2Q9UI95 211 aa13.05□□□□□ -0.32
LINC00539-201ENST00000411525 MTMR7Q9Y216 660 aa13.05□□□□□ -0.32
LINC00539-201ENST00000411525 MYH15Q9Y2K3 1946 aa13.05□□□□□ -0.32
LINC00539-201ENST00000411525 PALM3A6NDB9 673 aaPredicted RBP13.04□□□□□ -0.32
LINC00539-201ENST00000411525 BAG4O95429 457 aaKnown RBP13.04□□□□□ -0.32
LINC00539-201ENST00000411525 SNHG28P0DPA3 235 aa13.04□□□□□ -0.32
LINC00539-201ENST00000411525 PDHBP11177 359 aa13.04□□□□□ -0.32
LINC00539-201ENST00000411525 JAG1P78504 1218 aa13.04□□□□□ -0.32
LINC00539-201ENST00000411525 AKAP17AQ02040 695 aaKnown RBP13.04□□□□□ -0.32
LINC00539-201ENST00000411525 ASPRV1Q53RT3 343 aa13.04□□□□□ -0.32
LINC00539-201ENST00000411525 FASTKD5Q7L8L6 764 aaKnown RBP13.04□□□□□ -0.32
LINC00539-201ENST00000411525 RASGRP2Q7LDG7 609 aa13.04□□□□□ -0.32
LINC00539-201ENST00000411525 CCDC82Q8N4S0 544 aa13.04□□□□□ -0.32
LINC00539-201ENST00000411525 SRBD1Q8N5C6 995 aaKnown RBP13.04□□□□□ -0.32
LINC00539-201ENST00000411525 RAET1EQ8TD07 263 aa13.04□□□□□ -0.32
LINC00539-201ENST00000411525 SH3TC2Q8TF17 1288 aa13.04□□□□□ -0.32
LINC00539-201ENST00000411525 MKL1Q969V6 931 aa13.04□□□□□ -0.32
LINC00539-201ENST00000411525 TRIM47Q96LD4 638 aa13.04□□□□□ -0.32
LINC00539-201ENST00000411525 LZTS2Q9BRK4 669 aa13.04□□□□□ -0.32
LINC00539-201ENST00000411525 PICK1Q9NRD5 415 aa13.04□□□□□ -0.32
LINC00539-201ENST00000411525 CPA4Q9UI42 421 aa13.04□□□□□ -0.32
LINC00539-201ENST00000411525 ATP6V1DQ9Y5K8 247 aa13.04□□□□□ -0.32
LINC00539-201ENST00000411525 PTPRFP10586 1907 aa13.03□□□□□ -0.32
LINC00539-201ENST00000411525 PHF20L1A8MW92 1017 aa13.03□□□□□ -0.32
LINC00539-201ENST00000411525 PRPF3O43395 683 aaKnown RBP13.03□□□□□ -0.32
LINC00539-201ENST00000411525 MYCP01106 439 aaPredicted RBP13.03□□□□□ -0.32
LINC00539-201ENST00000411525 ASNSP08243 561 aa13.03□□□□□ -0.32
LINC00539-201ENST00000411525 CAP2P40123 477 aa13.03□□□□□ -0.32
LINC00539-201ENST00000411525 SCYL3Q8IZE3 742 aa13.03□□□□□ -0.32
LINC00539-201ENST00000411525 STAG2Q8N3U4 1231 aa13.03□□□□□ -0.32
LINC00539-201ENST00000411525 FBXO18Q8NFZ0 1043 aa13.03□□□□□ -0.32
LINC00539-201ENST00000411525 AIFM3Q96NN9 605 aa13.03□□□□□ -0.32
LINC00539-201ENST00000411525 GINM1Q9NU53 330 aa13.03□□□□□ -0.32
LINC00539-201ENST00000411525 RBM27Q9P2N5 1060 aaKnown RBP13.03□□□□□ -0.32
LINC00539-201ENST00000411525 SYNPO2Q9UMS6 1093 aa13.03□□□□□ -0.32
LINC00539-201ENST00000411525 USP17L5A8MUK1 530 aa13.02□□□□□ -0.33
LINC00539-201ENST00000411525 GRK4P32298 578 aa13.02□□□□□ -0.33
LINC00539-201ENST00000411525 MCM4P33991 863 aa13.02□□□□□ -0.33
LINC00539-201ENST00000411525 FCGRTP55899 365 aa13.02□□□□□ -0.33
LINC00539-201ENST00000411525 GUCY1B3Q02153 619 aa13.02□□□□□ -0.33
LINC00539-201ENST00000411525 ZNF543Q08ER8 600 aa13.02□□□□□ -0.33
LINC00539-201ENST00000411525 RESTQ13127 1097 aa13.02□□□□□ -0.33
LINC00539-201ENST00000411525 TRIM29Q14134 588 aa13.02□□□□□ -0.33
LINC00539-201ENST00000411525 CCDC96Q2M329 555 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms