RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 BRD3Q15059 726 aa14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 MCF2L2Q86YR7 1114 aa14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 DBNDD2Q9BQY9 259 aa14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 DSCC1Q9BVC3 393 aa14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 ANAPC5Q9UJX4 755 aa14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 SYCP2Q9BX26 1530 aa14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 LMTK3Q96Q04 1460 aa14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 MAPKAPK5Q8IW41 473 aa14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 PANK4Q9NVE7 773 aa14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 PRDM1O75626 825 aa14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 ABL1P00519 1130 aa14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 PABPC4Q13310 644 aaKnown RBP eCLIP14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 FAM8A1Q9UBU6 413 aa14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 MRPL11Q9Y3B7 192 aaKnown RBP14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 HYOU1Q9Y4L1 999 aa14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 THAP12O43422 761 aa14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 MORC3Q14149 939 aa14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 LRGUKQ96M69 825 aa14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 KCNK3O14649 394 aa14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 OPHN1O60890 802 aa14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 CDKL2Q92772 493 aa14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 HESX1Q9UBX0 185 aa14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 K7ENM7 598 aa14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 MMEL1Q495T6 779 aa14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 FNBP4Q8N3X1 1017 aaPredicted RBP14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 RDH13Q8NBN7 331 aa14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 MYRIPQ8NFW9 859 aa14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 TSC1Q92574 1164 aa14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 TESPA1A2RU30 521 aaPredicted RBP14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 TAF5LO75529 589 aa14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 TFAP4Q01664 338 aa14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 FAM227BQ96M60 508 aa14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 TPCN1Q9ULQ1 816 aa14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 PNOCQ13519 176 aa14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 KRT26Q7Z3Y9 468 aa14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 ZNF594Q96JF6 807 aaPredicted RBP14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 VPS54Q9P1Q0 977 aa14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 KCNJ14Q9UNX9 436 aa14.03□□□□□ -0.16
CCDC88C-204ENST00000389857 SRGAP2BP0DMP2 458 aa14.02□□□□□ -0.16
CCDC88C-204ENST00000389857 ATF2P15336 505 aa14.02□□□□□ -0.16
CCDC88C-204ENST00000389857 GCKRQ14397 625 aa14.02□□□□□ -0.16
CCDC88C-204ENST00000389857 NLRC4Q9NPP4 1024 aa14.02□□□□□ -0.16
CCDC88C-204ENST00000389857 SBNO1A3KN83 1393 aa14.02□□□□□ -0.16
CCDC88C-204ENST00000389857 ZBTB7BO15156 539 aaPredicted RBP14.02□□□□□ -0.16
CCDC88C-204ENST00000389857 TTC4O95801 387 aa14.02□□□□□ -0.16
CCDC88C-204ENST00000389857 IFNB1P01574 187 aa14.02□□□□□ -0.16
CCDC88C-204ENST00000389857 POLR2MP0CAP2 368 aa14.02□□□□□ -0.16
CCDC88C-204ENST00000389857 PPARAQ07869 468 aa14.02□□□□□ -0.16
CCDC88C-204ENST00000389857 GALNT17Q6IS24 598 aa14.02□□□□□ -0.16
CCDC88C-204ENST00000389857 UBE2Q2Q8WVN8 375 aa14.02□□□□□ -0.16
CCDC88C-204ENST00000389857 KDRP35968 1356 aa14.02□□□□□ -0.16
CCDC88C-204ENST00000389857 GUCY2FP51841 1108 aa14.02□□□□□ -0.16
CCDC88C-204ENST00000389857 FAM47CQ5HY64 1035 aa14.02□□□□□ -0.16
CCDC88C-204ENST00000389857 RAB44Q7Z6P3 723 aaPredicted RBP14.02□□□□□ -0.16
CCDC88C-204ENST00000389857 SLC17A8Q8NDX2 589 aa14.02□□□□□ -0.16
CCDC88C-204ENST00000389857 PDZD8Q8NEN9 1154 aa14.02□□□□□ -0.16
CCDC88C-204ENST00000389857 RABEP2Q9H5N1 569 aa14.02□□□□□ -0.16
CCDC88C-204ENST00000389857 SGSM2O43147 1006 aa14.02□□□□□ -0.17
CCDC88C-204ENST00000389857 ABCB4P21439 1286 aa14.02□□□□□ -0.17
CCDC88C-204ENST00000389857 ECE1P42892 770 aa14.02□□□□□ -0.17
CCDC88C-204ENST00000389857 BAIAP2L1Q9UHR4 511 aa14.02□□□□□ -0.17
CCDC88C-204ENST00000389857 TYW5A2RUC4 315 aaKnown RBP14.02□□□□□ -0.17
CCDC88C-204ENST00000389857 A6NJR5 290 aa14.02□□□□□ -0.17
CCDC88C-204ENST00000389857 SMIM24O75264 130 aa14.02□□□□□ -0.17
CCDC88C-204ENST00000389857 PRKG1Q13976 671 aa14.02□□□□□ -0.17
CCDC88C-204ENST00000389857 WHAMMQ8TF30 809 aa14.02□□□□□ -0.17
CCDC88C-204ENST00000389857 HDAC11Q96DB2 347 aa14.02□□□□□ -0.17
CCDC88C-204ENST00000389857 MYL10Q9BUA6 226 aa14.02□□□□□ -0.17
CCDC88C-204ENST00000389857 CCPG1Q9ULG6 757 aa14.02□□□□□ -0.17
CCDC88C-204ENST00000389857 TMOD1P28289 359 aa14.02□□□□□ -0.17
CCDC88C-204ENST00000389857 PIK3CAP42336 1068 aa14.02□□□□□ -0.17
CCDC88C-204ENST00000389857 SKA2Q8WVK7 121 aaPredicted RBP14.02□□□□□ -0.17
CCDC88C-204ENST00000389857 TEKT3Q9BXF9 490 aa14.02□□□□□ -0.17
CCDC88C-204ENST00000389857 SLC52A2Q9HAB3 445 aa14.02□□□□□ -0.17
CCDC88C-204ENST00000389857 PPME1Q9Y570 386 aa14.02□□□□□ -0.17
CCDC88C-204ENST00000389857 FAM160B1Q5W0V3 765 aa14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 PSTPIP2Q9H939 334 aa14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 C4orf50Q6ZRC1 276 aa14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 NME8Q8N427 588 aa14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 OR8K1Q8NGG5 319 aa14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 USP40Q9NVE5 1235 aa14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 E7EWF7 191 aa14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 HIP1RO75146 1068 aa14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 LMNB2Q03252 620 aa14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 DDX25Q9UHL0 483 aaKnown RBP14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 CDC37L1Q7L3B6 337 aa14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 UIMC1Q96RL1 719 aa14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 ZSCAN10Q96SZ4 725 aaPredicted RBP14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 A0A1W2PP64 1363 aa14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 GPATCH8Q9UKJ3 1502 aaKnown RBP14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 IGSF3O75054 1194 aa14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 BAG2O95816 211 aa14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 KRT24Q2M2I5 525 aa14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 DCAF15Q66K64 600 aa14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 POMGNT1Q8WZA1 660 aa14.01□□□□□ -0.17
CCDC88C-204ENST00000389857 DNAJC8O75937 253 aaPredicted RBP14□□□□□ -0.17
CCDC88C-204ENST00000389857 RLBP1P12271 317 aa14□□□□□ -0.17
CCDC88C-204ENST00000389857 CDR2Q01850 454 aa14□□□□□ -0.17
CCDC88C-204ENST00000389857 XKR9Q5GH70 373 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms