RNA–Protein interactions for RNA: ENST00000380518.7

COL2A1-202, Transcript of collagen type II alpha 1 chain, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene COL2A1, Length 5,071 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-202ENST00000380518 PRR16Q569H4 304 aa17.68■□□□□ 0.42
COL2A1-202ENST00000380518 ARHGEF2Q92974 986 aaKnown RBP17.68■□□□□ 0.42
COL2A1-202ENST00000380518 GDAP1L1Q96MZ0 367 aa17.68■□□□□ 0.42
COL2A1-202ENST00000380518 VCX3BQ9H321 246 aa17.68■□□□□ 0.42
COL2A1-202ENST00000380518 SLAIN2Q9P270 581 aa17.68■□□□□ 0.42
COL2A1-202ENST00000380518 ZNF215Q9UL58 517 aaPredicted RBP17.68■□□□□ 0.42
COL2A1-202ENST00000380518 KCNK3O14649 394 aa17.67■□□□□ 0.42
COL2A1-202ENST00000380518 RGS16O15492 202 aaPredicted RBP17.67■□□□□ 0.42
COL2A1-202ENST00000380518 P4HA1P13674 534 aa17.67■□□□□ 0.42
COL2A1-202ENST00000380518 ABCB4P21439 1286 aa17.67■□□□□ 0.42
COL2A1-202ENST00000380518 GBP1P32455 592 aa17.67■□□□□ 0.42
COL2A1-202ENST00000380518 DEPTORQ8TB45 409 aa17.67■□□□□ 0.42
COL2A1-202ENST00000380518 P3H4Q92791 437 aa17.67■□□□□ 0.42
COL2A1-202ENST00000380518 HGSO14964 777 aaPredicted RBP17.67■□□□□ 0.42
COL2A1-202ENST00000380518 N4BP1O75113 896 aaKnown RBP17.67■□□□□ 0.42
COL2A1-202ENST00000380518 PRPF6O94906 941 aaKnown RBP17.67■□□□□ 0.42
COL2A1-202ENST00000380518 CTNNA1P35221 906 aaKnown RBP17.67■□□□□ 0.42
COL2A1-202ENST00000380518 SCRN1Q12765 414 aa17.67■□□□□ 0.42
COL2A1-202ENST00000380518 GNPTABQ3T906 1256 aa17.67■□□□□ 0.42
COL2A1-202ENST00000380518 CLIC6Q96NY7 704 aa17.67■□□□□ 0.42
COL2A1-202ENST00000380518 RNF40O75150 1001 aa17.67■□□□□ 0.42
COL2A1-202ENST00000380518 PDE8BO95263 885 aa17.67■□□□□ 0.42
COL2A1-202ENST00000380518 RPN1P04843 607 aaKnown RBP17.67■□□□□ 0.42
COL2A1-202ENST00000380518 VPS37BQ9H9H4 285 aa17.67■□□□□ 0.42
COL2A1-202ENST00000380518 SH3BP5O60239 455 aa17.67■□□□□ 0.42
COL2A1-202ENST00000380518 ATP2B4P23634 1241 aa17.67■□□□□ 0.42
COL2A1-202ENST00000380518 PTGDRQ13258 359 aa17.67■□□□□ 0.42
COL2A1-202ENST00000380518 ANKRD20A3Q5VUR7 823 aa17.67■□□□□ 0.42
COL2A1-202ENST00000380518 CASC4Q6P4E1 433 aa17.67■□□□□ 0.42
COL2A1-202ENST00000380518 NIM1KQ8IY84 436 aa17.67■□□□□ 0.42
COL2A1-202ENST00000380518 RASEFQ8IZ41 740 aa17.67■□□□□ 0.42
COL2A1-202ENST00000380518 LARSQ9P2J5 1176 aaKnown RBP17.67■□□□□ 0.42
COL2A1-202ENST00000380518 KRIT1O00522 736 aa17.66■□□□□ 0.42
COL2A1-202ENST00000380518 FAM26FQ5R3K3 315 aa17.66■□□□□ 0.42
COL2A1-202ENST00000380518 COL4A3BPQ9Y5P4 624 aa17.66■□□□□ 0.42
COL2A1-202ENST00000380518 PSDA5PKW4 1024 aaPredicted RBP17.66■□□□□ 0.42
COL2A1-202ENST00000380518 TBC1D8O95759 1140 aa17.66■□□□□ 0.42
COL2A1-202ENST00000380518 TRMT2AQ8IZ69 625 aaKnown RBP17.66■□□□□ 0.42
COL2A1-202ENST00000380518 PROCA1Q8NCQ7 364 aaPredicted RBP17.66■□□□□ 0.42
COL2A1-202ENST00000380518 PFDN4Q9NQP4 134 aa17.66■□□□□ 0.42
COL2A1-202ENST00000380518 PANK4Q9NVE7 773 aa17.66■□□□□ 0.42
COL2A1-202ENST00000380518 TRPC6Q9Y210 931 aa17.66■□□□□ 0.42
COL2A1-202ENST00000380518 SLC39A14Q15043 492 aa17.66■□□□□ 0.42
COL2A1-202ENST00000380518 TSNAXIP1Q2TAA8 658 aa17.66■□□□□ 0.42
COL2A1-202ENST00000380518 ZMYM1Q5SVZ6 1142 aa17.66■□□□□ 0.42
COL2A1-202ENST00000380518 PLEKHF1Q96S99 279 aa17.66■□□□□ 0.42
COL2A1-202ENST00000380518 MAGEF1Q9HAY2 307 aa17.66■□□□□ 0.42
COL2A1-202ENST00000380518 DBNLQ9UJU6 430 aaKnown RBP17.66■□□□□ 0.42
COL2A1-202ENST00000380518 H2AFZP0C0S5 128 aa17.66■□□□□ 0.42
COL2A1-202ENST00000380518 PPP2R5DQ14738 602 aa17.66■□□□□ 0.42
COL2A1-202ENST00000380518 H2AFVQ71UI9 128 aa17.66■□□□□ 0.42
COL2A1-202ENST00000380518 MRPL11Q9Y3B7 192 aaKnown RBP17.66■□□□□ 0.42
COL2A1-202ENST00000380518 CLIC4Q9Y696 253 aa17.66■□□□□ 0.42
COL2A1-202ENST00000380518 CIAO1O76071 339 aa17.65■□□□□ 0.42
COL2A1-202ENST00000380518 FAM178BQ8IXR5 827 aa17.65■□□□□ 0.42
COL2A1-202ENST00000380518 GLG1Q92896 1179 aa17.65■□□□□ 0.42
COL2A1-202ENST00000380518 GSDMAQ96QA5 445 aa17.65■□□□□ 0.42
COL2A1-202ENST00000380518 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.65■□□□□ 0.42
COL2A1-202ENST00000380518 HOMER3Q9NSC5 361 aa17.65■□□□□ 0.42
COL2A1-202ENST00000380518 DISP1Q96F81 1524 aa17.65■□□□□ 0.42
COL2A1-202ENST00000380518 PPIP5K2O43314 1243 aa17.65■□□□□ 0.42
COL2A1-202ENST00000380518 GUCY2FP51841 1108 aa17.65■□□□□ 0.42
COL2A1-202ENST00000380518 PCDHA5Q9Y5H7 936 aa17.65■□□□□ 0.42
COL2A1-202ENST00000380518 EPN1Q9Y6I3 576 aaPredicted RBP17.65■□□□□ 0.42
COL2A1-202ENST00000380518 BUB1BO60566 1050 aaPredicted RBP17.65■□□□□ 0.42
COL2A1-202ENST00000380518 CHRNDQ07001 517 aa17.65■□□□□ 0.42
COL2A1-202ENST00000380518 TNFAIP1Q13829 316 aa17.65■□□□□ 0.42
COL2A1-202ENST00000380518 ADCK5Q3MIX3 580 aa17.65■□□□□ 0.42
COL2A1-202ENST00000380518 SYMPKQ92797 1274 aaKnown RBP17.65■□□□□ 0.42
COL2A1-202ENST00000380518 GPKOWQ92917 476 aaPredicted RBP eCLIP17.65■□□□□ 0.42
COL2A1-202ENST00000380518 MAP3K15Q6ZN16 1313 aa17.65■□□□□ 0.42
COL2A1-202ENST00000380518 AATKQ6ZMQ8 1374 aa17.65■□□□□ 0.42
COL2A1-202ENST00000380518 STX2P32856 288 aa17.65■□□□□ 0.42
COL2A1-202ENST00000380518 IRX3P78415 501 aaPredicted RBP17.65■□□□□ 0.42
COL2A1-202ENST00000380518 DDX17Q92841 729 aaKnown RBP17.65■□□□□ 0.42
COL2A1-202ENST00000380518 ATP2A3Q93084 1043 aa17.65■□□□□ 0.42
COL2A1-202ENST00000380518 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.65■□□□□ 0.421e-6■■■■■ 29.5
COL2A1-202ENST00000380518 SRGAP1Q7Z6B7 1085 aa17.64■□□□□ 0.42
COL2A1-202ENST00000380518 FBXO11Q86XK2 927 aa17.64■□□□□ 0.42
COL2A1-202ENST00000380518 TDRD7Q8NHU6 1098 aaKnown RBP17.64■□□□□ 0.42
COL2A1-202ENST00000380518 FRMPD2Q68DX3 1309 aaPredicted RBP17.64■□□□□ 0.41
COL2A1-202ENST00000380518 H0YCG3 227 aa17.64■□□□□ 0.41
COL2A1-202ENST00000380518 IFNB1P01574 187 aa17.64■□□□□ 0.41
COL2A1-202ENST00000380518 POLR2MP0CAP2 368 aa17.64■□□□□ 0.41
COL2A1-202ENST00000380518 NSMCE1Q8WV22 266 aa17.64■□□□□ 0.41
COL2A1-202ENST00000380518 RIC8AQ9NPQ8 531 aa17.64■□□□□ 0.41
COL2A1-202ENST00000380518 DDX25Q9UHL0 483 aaKnown RBP17.64■□□□□ 0.41
COL2A1-202ENST00000380518 PHKA1P46020 1223 aa17.64■□□□□ 0.41
COL2A1-202ENST00000380518 TRAPPC10P48553 1259 aa17.64■□□□□ 0.41
COL2A1-202ENST00000380518 CARD10Q9BWT7 1032 aa17.64■□□□□ 0.41
COL2A1-202ENST00000380518 GOLGA8HP0CJ92 632 aa17.64■□□□□ 0.41
COL2A1-202ENST00000380518 POLR2FP61218 127 aaKnown RBP17.64■□□□□ 0.41
COL2A1-202ENST00000380518 LRRC47Q8N1G4 583 aaKnown RBP17.64■□□□□ 0.41
COL2A1-202ENST00000380518 GRK7Q8WTQ7 553 aa17.64■□□□□ 0.41
COL2A1-202ENST00000380518 FOXP1Q9H334 677 aaPredicted RBP17.64■□□□□ 0.41
COL2A1-202ENST00000380518 SLC39A2Q9NP94 309 aa17.64■□□□□ 0.41
COL2A1-202ENST00000380518 PPP6R2O75170 966 aa17.63■□□□□ 0.41
COL2A1-202ENST00000380518 ADAM9Q13443 819 aa17.63■□□□□ 0.41
COL2A1-202ENST00000380518 FAM102BQ5T8I3 360 aa17.63■□□□□ 0.41
COL2A1-202ENST00000380518 RPUSD2Q8IZ73 545 aaKnown RBP17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms