RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 TXNP10599 105 aaKnown RBP9.43□□□□□ -0.9
HMGB1-203ENST00000341423 MSNP26038 577 aaKnown RBP9.43□□□□□ -0.9
HMGB1-203ENST00000341423 MYL7Q01449 175 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 TSPY1Q01534 308 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 PRR23BQ6ZRT6 265 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 SND1Q7KZF4 910 aaKnown RBP eCLIP9.43□□□□□ -0.9
HMGB1-203ENST00000341423 IFNL3Q8IZI9 196 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 IFIH1Q9BYX4 1025 aaKnown RBP9.43□□□□□ -0.9
HMGB1-203ENST00000341423 ZNF70Q9UC06 446 aaPredicted RBP9.43□□□□□ -0.9
HMGB1-203ENST00000341423 SUGT1Q9Y2Z0 365 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 RWDD3Q9Y3V2 267 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 TADA2AO75478 443 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 GH1P01241 217 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 ADCY7P51828 1080 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 YWHAEP62258 255 aaKnown RBP9.43□□□□□ -0.9
HMGB1-203ENST00000341423 ZNF174Q15697 407 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 CCDC144CPQ8IYA2 1237 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 NDUFAF2Q8N183 169 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 NSUN6Q8TEA1 469 aaKnown RBP9.43□□□□□ -0.9
HMGB1-203ENST00000341423 TEX13BQ9BXU2 312 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 NAT10Q9H0A0 1025 aaKnown RBP9.43□□□□□ -0.9
HMGB1-203ENST00000341423 SLC45A4Q5BKX6 768 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 SUSD4Q5VX71 490 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 SHDQ96IW2 340 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 IPO9Q96P70 1041 aaKnown RBP9.43□□□□□ -0.9
HMGB1-203ENST00000341423 PPP1R9BQ96SB3 815 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 SLC26A6Q9BXS9 759 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 BIVM-ERCC5R4GMW8 1640 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 MOCS3O95396 460 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 CCDC192P0DO97 292 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 CENPQQ7L2Z9 268 aaPredicted RBP9.42□□□□□ -0.9
HMGB1-203ENST00000341423 NT5DC4Q86YG4 428 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 FLCNQ8NFG4 579 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 GCOM2Q9BZD3 368 aaPredicted RBP9.42□□□□□ -0.9
HMGB1-203ENST00000341423 SRPRBQ9Y5M8 271 aaKnown RBP9.42□□□□□ -0.9
HMGB1-203ENST00000341423 DISP1Q96F81 1524 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 TNNC2P02585 160 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 SKIP12755 728 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 MX1P20591 662 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 CMTR1Q8N1G2 835 aaKnown RBP9.42□□□□□ -0.9
HMGB1-203ENST00000341423 LINC00116Q8NCU8 138 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 ZNF594Q96JF6 807 aaPredicted RBP9.42□□□□□ -0.9
HMGB1-203ENST00000341423 JAKMIP1Q96N16 626 aaKnown RBP9.42□□□□□ -0.9
HMGB1-203ENST00000341423 MROH8Q9H579 483 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 STN1Q9H668 368 aaKnown RBP9.42□□□□□ -0.9
HMGB1-203ENST00000341423 FSD2A1L4K1 749 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 LRRIQ4A6NIV6 560 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 OPLAHO14841 1288 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 BMP15O95972 392 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 FOSP01100 380 aaPredicted RBP9.42□□□□□ -0.9
HMGB1-203ENST00000341423 P4HBP07237 508 aaKnown RBP9.42□□□□□ -0.9
HMGB1-203ENST00000341423 STARD3Q14849 445 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 XKR9Q5GH70 373 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 ATOH1Q92858 354 aaPredicted RBP9.42□□□□□ -0.9
HMGB1-203ENST00000341423 RIPOR3Q96MK2 946 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 LSM7Q9UK45 103 aaKnown RBP9.42□□□□□ -0.9
HMGB1-203ENST00000341423 ZFYVE9O95405 1425 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 WDR64B1ANS9 1081 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 RNF113AO15541 343 aaKnown RBP9.42□□□□□ -0.9
HMGB1-203ENST00000341423 ALDH1L2Q3SY69 923 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 ATAT1Q5SQI0 421 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 PDXDC2PQ6P474 469 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 CAMKK2Q96RR4 588 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 MCOLN1Q9GZU1 580 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 ARMT1Q9H993 441 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 CPSF3Q9UKF6 684 aaKnown RBP9.42□□□□□ -0.9
HMGB1-203ENST00000341423 HEG1Q9ULI3 1381 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 CTNND1O60716 968 aaKnown RBP9.42□□□□□ -0.9
HMGB1-203ENST00000341423 POLA2Q14181 598 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 NLRP10Q86W26 655 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 MMRN2Q9H8L6 949 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 DACT1Q9NYF0 836 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 PCDHB13Q9Y5F0 798 aa9.42□□□□□ -0.9
HMGB1-203ENST00000341423 CCT6AP40227 531 aaKnown RBP9.41□□□□□ -0.9
HMGB1-203ENST00000341423 PAK2Q13177 524 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 MTMR2Q13614 643 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 KIZQ2M2Z5 673 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 TKFCQ3LXA3 575 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 PRPF38AQ8NAV1 312 aaKnown RBP9.41□□□□□ -0.9
HMGB1-203ENST00000341423 ARNTL2Q8WYA1 636 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 C8orf76Q96K31 380 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 TSNARE1Q96NA8 513 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 RPAP3Q9H6T3 665 aaPredicted RBP9.41□□□□□ -0.9
HMGB1-203ENST00000341423 HESX1Q9UBX0 185 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 FEM1BQ9UK73 627 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 F8W8V4 182 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 BPIFB4P59827 614 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 FPGSQ05932 587 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 SASS6Q6UVJ0 657 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 SCYL3Q8IZE3 742 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 LRRC47Q8N1G4 583 aaKnown RBP9.41□□□□□ -0.9
HMGB1-203ENST00000341423 EPC1Q9H2F5 836 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 PRDM10Q9NQV6 1147 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 GOLGA6CA6NDK9 693 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 GOLGA6BA6NDN3 693 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 STRNO43815 780 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 GOLGA6DP0CG33 693 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 VEGFBP49765 207 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 ARHGAP4P98171 946 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 RABEP1Q15276 862 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms