RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 DHX36Q9H2U1 1008 aaKnown RBP4.42□□□□□ -1.7
USH2A-201ENST00000307340 GAP43P17677 238 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 ADRA2BP18089 450 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 CYP2C19P33261 490 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 FKBP3Q00688 224 aaKnown RBP4.42□□□□□ -1.7
USH2A-201ENST00000307340 PAK1Q13153 545 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 MTX1Q13505 466 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 ATP2B3Q16720 1220 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 HYOU1Q9Y4L1 999 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 NBPF14Q5TI25 921 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 TTC13Q8NBP0 860 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 ZBTB7BO15156 539 aaPredicted RBP4.42□□□□□ -1.7
USH2A-201ENST00000307340 RNF40O75150 1001 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 TROVE2P10155 538 aaKnown RBP eCLIP4.42□□□□□ -1.7
USH2A-201ENST00000307340 ATF7P17544 494 aaPredicted RBP4.42□□□□□ -1.7
USH2A-201ENST00000307340 CCDC89Q8N998 374 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 NEK9Q8TD19 979 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 FBXO41Q8TF61 875 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 GTF3C6Q969F1 213 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 SERPINI1Q99574 410 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 TRIM35Q9UPQ4 493 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 RBBP5Q15291 538 aaKnown RBP4.42□□□□□ -1.7
USH2A-201ENST00000307340 CEP85Q6P2H3 762 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 CD2APQ9Y5K6 639 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 MYO10Q9HD67 2058 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 RLBP1P12271 317 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 STAT1P42224 750 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 CCR3P51677 355 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 SPDYCQ5MJ68 293 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 ALG1Q9BT22 464 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 CCDC113Q9H0I3 377 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 CACYBPQ9HB71 228 aaKnown RBP4.42□□□□□ -1.7
USH2A-201ENST00000307340 DCTN3O75935 186 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 KRT5P13647 590 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 UBXN1Q04323 297 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 TERB1Q8NA31 727 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 PPP1R14CQ8TAE6 165 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 PANX2Q96RD6 677 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 MAP3K2Q9Y2U5 619 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 SYNRGQ9UMZ2 1314 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 EPHB4P54760 987 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 RRS1Q15050 365 aaKnown RBP4.42□□□□□ -1.7
USH2A-201ENST00000307340 SRGAP2BP0DMP2 458 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 CMA1P23946 247 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 TBCCQ15814 346 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 AKNAD1Q5T1N1 836 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 POTEB3A0JP26 581 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 PDE8AO60658 829 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 RPL22P35268 128 aaKnown RBP4.42□□□□□ -1.7
USH2A-201ENST00000307340 POTEBQ6S5H4 581 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 FBXL16Q8N461 479 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 AFAP1L1Q8TED9 768 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 SYTL4Q96C24 671 aaPredicted RBP4.42□□□□□ -1.7
USH2A-201ENST00000307340 DTNBP1Q96EV8 351 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 TRIM33Q9UPN9 1127 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 PATL2C9JE40 543 aaKnown RBP4.42□□□□□ -1.7
USH2A-201ENST00000307340 GAS2O43903 313 aaKnown RBP4.42□□□□□ -1.7
USH2A-201ENST00000307340 BCAR3O75815 825 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 TTC31Q49AM3 519 aaPredicted RBP4.42□□□□□ -1.7
USH2A-201ENST00000307340 SYDE1Q6ZW31 735 aaPredicted RBP4.42□□□□□ -1.7
USH2A-201ENST00000307340 TRIM72Q6ZMU5 477 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 MICAL1Q8TDZ2 1067 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 TRPC6Q9Y210 931 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 USP6P35125 1406 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 MEGF6O75095 1541 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 RASGRF2O14827 1237 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 C8orf34Q49A92 452 aa4.42□□□□□ -1.7
USH2A-201ENST00000307340 REXO1Q8N1G1 1221 aaKnown RBP4.42□□□□□ -1.7
USH2A-201ENST00000307340 EIF4ENIF1Q9NRA8 985 aaKnown RBP4.42□□□□□ -1.7
USH2A-201ENST00000307340 ACEP12821 1306 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 RNF113AO15541 343 aaKnown RBP4.41□□□□□ -1.7
USH2A-201ENST00000307340 PHRF1Q9P1Y6 1649 aaKnown RBP4.41□□□□□ -1.7
USH2A-201ENST00000307340 CASQ2O14958 399 aaPredicted RBP4.41□□□□□ -1.7
USH2A-201ENST00000307340 ZNF790Q6PG37 636 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 SPC25Q9HBM1 224 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 SPAG6O75602 509 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 TMOD1P28289 359 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 KRR1Q13601 381 aaKnown RBP4.41□□□□□ -1.7
USH2A-201ENST00000307340 PDXDC1Q6P996 788 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 SEPT14Q6ZU15 432 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 CARD6Q9BX69 1037 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 NR1I2O75469 434 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 HSPA2P54652 639 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 NEDD9Q14511 834 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 CREB3L3Q68CJ9 461 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 TCP11Q8WWU5 503 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 USP26Q9BXU7 913 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 TRMT112Q9UI30 125 aaKnown RBP4.41□□□□□ -1.7
USH2A-201ENST00000307340 KCNH3Q9ULD8 1083 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 USP16Q9Y5T5 823 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 TECPR2O15040 1411 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 RFC4P35249 363 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 RHOT2Q8IXI1 618 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 ZCRB1Q8TBF4 217 aaKnown RBP4.41□□□□□ -1.7
USH2A-201ENST00000307340 RSPH1Q8WYR4 309 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 GRID2IPA4D2P6 1211 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 CHMLP26374 656 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 ANO6Q4KMQ2 910 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 PLEKHM2Q8IWE5 1019 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 OR8K1Q8NGG5 319 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms