RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 RCSD1Q6JBY9 416 aa27.09■■□□□ 1.93
LSM4-201ENST00000252816 TMEM47Q9BQJ4 181 aa27.09■■□□□ 1.93
LSM4-201ENST00000252816 SLC38A10Q9HBR0 1119 aa27.09■■□□□ 1.93
LSM4-201ENST00000252816 HMX1Q9NP08 348 aaPredicted RBP27.09■■□□□ 1.93
LSM4-201ENST00000252816 MTMR7Q9Y216 660 aa27.09■■□□□ 1.93
LSM4-201ENST00000252816 ZNF236Q9UL36 1845 aa27.09■■□□□ 1.93
LSM4-201ENST00000252816 TOP1P11387 765 aaKnown RBP27.08■■□□□ 1.93
LSM4-201ENST00000252816 PTH1RQ03431 593 aa27.08■■□□□ 1.93
LSM4-201ENST00000252816 KCTD1Q719H9 257 aa27.08■■□□□ 1.93
LSM4-201ENST00000252816 DPP9Q86TI2 863 aa27.08■■□□□ 1.93
LSM4-201ENST00000252816 ABRAQ8N0Z2 381 aa27.08■■□□□ 1.93
LSM4-201ENST00000252816 ESR2Q92731 530 aa27.08■■□□□ 1.93
LSM4-201ENST00000252816 TEX13BQ9BXU2 312 aa27.08■■□□□ 1.93
LSM4-201ENST00000252816 CRISPLD2Q9H0B8 497 aa27.08■■□□□ 1.93
LSM4-201ENST00000252816 ISY1Q9ULR0 285 aaKnown RBP27.08■■□□□ 1.93
LSM4-201ENST00000252816 RIPK3Q9Y572 518 aa27.08■■□□□ 1.93
LSM4-201ENST00000252816 SGSM2O43147 1006 aa27.07■■□□□ 1.92
LSM4-201ENST00000252816 ZBED4O75132 1171 aa27.07■■□□□ 1.92
LSM4-201ENST00000252816 IGHA2P01877 340 aa27.07■■□□□ 1.92
LSM4-201ENST00000252816 SNRNP48Q6IEG0 339 aaKnown RBP27.07■■□□□ 1.92
LSM4-201ENST00000252816 UBE2Q1Q7Z7E8 422 aa27.07■■□□□ 1.92
LSM4-201ENST00000252816 B4E1Z4 1266 aa27.06■■□□□ 1.92
LSM4-201ENST00000252816 ATP2A1O14983 1001 aa27.06■■□□□ 1.92
LSM4-201ENST00000252816 FCER1AP12319 257 aa27.06■■□□□ 1.92
LSM4-201ENST00000252816 STAT2P52630 851 aa27.06■■□□□ 1.92
LSM4-201ENST00000252816 CPXCR1Q8N123 301 aa27.06■■□□□ 1.92
LSM4-201ENST00000252816 ZKSCAN3Q9BRR0 538 aa27.06■■□□□ 1.92
LSM4-201ENST00000252816 RAVER2Q9HCJ3 691 aaKnown RBP27.06■■□□□ 1.92
LSM4-201ENST00000252816 PLA2G6O60733 806 aa27.05■■□□□ 1.92
LSM4-201ENST00000252816 KDM4AO75164 1064 aa27.05■■□□□ 1.92
LSM4-201ENST00000252816 TFRCP02786 760 aaKnown RBP27.05■■□□□ 1.92
LSM4-201ENST00000252816 CCND3P30281 292 aaPredicted RBP27.05■■□□□ 1.92
LSM4-201ENST00000252816 COPB2P35606 906 aa27.05■■□□□ 1.92
LSM4-201ENST00000252816 MFSD14CQ5VZR4 134 aa27.05■■□□□ 1.92
LSM4-201ENST00000252816 FAM160B2Q86V87 743 aa27.05■■□□□ 1.92
LSM4-201ENST00000252816 CHURC1Q8WUH1 139 aa27.05■■□□□ 1.92
LSM4-201ENST00000252816 TTC14Q96N46 770 aa27.05■■□□□ 1.92
LSM4-201ENST00000252816 MMP19Q99542 508 aa27.05■■□□□ 1.92
LSM4-201ENST00000252816 CYP2C19P33261 490 aa27.04■■□□□ 1.92
LSM4-201ENST00000252816 DCAF4Q8WV16 495 aa27.04■■□□□ 1.92
LSM4-201ENST00000252816 CTDP1Q9Y5B0 961 aaPredicted RBP27.04■■□□□ 1.92
LSM4-201ENST00000252816 SLC4A3P48751 1232 aa27.03■■□□□ 1.92
LSM4-201ENST00000252816 IKQ13123 557 aaPredicted RBP27.03■■□□□ 1.92
LSM4-201ENST00000252816 CCDC96Q2M329 555 aa27.03■■□□□ 1.92
LSM4-201ENST00000252816 OLFML2BQ68BL8 750 aa27.03■■□□□ 1.92
LSM4-201ENST00000252816 ZSWIM5Q9P217 1185 aa27.03■■□□□ 1.92
LSM4-201ENST00000252816 FARP2O94887 1054 aaPredicted RBP27.02■■□□□ 1.92
LSM4-201ENST00000252816 PGK2P07205 417 aa27.02■■□□□ 1.92
LSM4-201ENST00000252816 NT5C2P49902 561 aa27.02■■□□□ 1.92
LSM4-201ENST00000252816 OAZ1P54368 228 aa27.02■■□□□ 1.92
LSM4-201ENST00000252816 TTBK2Q6IQ55 1244 aa27.02■■□□□ 1.92
LSM4-201ENST00000252816 CCDC136Q96JN2 1154 aa27.02■■□□□ 1.92
LSM4-201ENST00000252816 PRR12Q9ULL5 1215 aa27.02■■□□□ 1.92
LSM4-201ENST00000252816 ZNF536O15090 1300 aa27.01■■□□□ 1.91
LSM4-201ENST00000252816 FDX1P10109 184 aa27.01■■□□□ 1.91
LSM4-201ENST00000252816 KCTD2Q14681 263 aa27.01■■□□□ 1.91
LSM4-201ENST00000252816 TRPV1Q8NER1 839 aa27.01■■□□□ 1.91
LSM4-201ENST00000252816 MAML3Q96JK9 1138 aa27.01■■□□□ 1.91
LSM4-201ENST00000252816 KRT23Q9C075 422 aa27.01■■□□□ 1.91
LSM4-201ENST00000252816 SLC5A4Q9NY91 659 aa27.01■■□□□ 1.91
LSM4-201ENST00000252816 ZNFX1Q9P2E3 1918 aaKnown RBP27■■□□□ 1.91
LSM4-201ENST00000252816 FRMPD2Q68DX3 1309 aaPredicted RBP27■■□□□ 1.91
LSM4-201ENST00000252816 CYP21A2P08686 494 aa27■■□□□ 1.91
LSM4-201ENST00000252816 PDHBP11177 359 aa27■■□□□ 1.91
LSM4-201ENST00000252816 CAPN2P17655 700 aa27■■□□□ 1.91
LSM4-201ENST00000252816 SNAP25P60880 206 aa27■■□□□ 1.91
LSM4-201ENST00000252816 BMP2KLQ5H9B9 411 aa27■■□□□ 1.91
LSM4-201ENST00000252816 IQCA1Q86XH1 822 aa27■■□□□ 1.91
LSM4-201ENST00000252816 DGKHQ86XP1 1220 aa27■■□□□ 1.91
LSM4-201ENST00000252816 TAF6LQ9Y6J9 622 aa27■■□□□ 1.91
LSM4-201ENST00000252816 U3KPZ7 1027 aaPredicted RBP27■■□□□ 1.91
LSM4-201ENST00000252816 SLC16A2P36021 539 aa26.99■■□□□ 1.91
LSM4-201ENST00000252816 ZNF792Q3KQV3 632 aa26.99■■□□□ 1.91
LSM4-201ENST00000252816 LHX8Q68G74 356 aa26.99■■□□□ 1.91
LSM4-201ENST00000252816 BTNL9Q6UXG8 535 aa26.99■■□□□ 1.91
LSM4-201ENST00000252816 ANKS1AQ92625 1134 aa26.99■■□□□ 1.91
LSM4-201ENST00000252816 AGBL1Q96MI9 1066 aa26.99■■□□□ 1.91
LSM4-201ENST00000252816 ZSCAN10Q96SZ4 725 aaPredicted RBP26.99■■□□□ 1.91
LSM4-201ENST00000252816 CNNM2Q9H8M5 875 aa26.99■■□□□ 1.91
LSM4-201ENST00000252816 GPCPD1Q9NPB8 672 aa26.99■■□□□ 1.91
LSM4-201ENST00000252816 OGDHLQ9ULD0 1010 aa26.99■■□□□ 1.91
LSM4-201ENST00000252816 SNHG28P0DPA3 235 aa26.98■■□□□ 1.91
LSM4-201ENST00000252816 CYBAP13498 195 aa26.98■■□□□ 1.91
LSM4-201ENST00000252816 MNX1P50219 401 aaPredicted RBP26.98■■□□□ 1.91
LSM4-201ENST00000252816 DHX30Q7L2E3 1194 aaKnown RBP eCLIP26.98■■□□□ 1.911e-7■■■□□ 16
LSM4-201ENST00000252816 ENAHQ8N8S7 591 aaPredicted RBP26.98■■□□□ 1.91
LSM4-201ENST00000252816 DIS3LQ8TF46 1054 aaKnown RBP26.98■■□□□ 1.91
LSM4-201ENST00000252816 MAP4K1Q92918 833 aa26.98■■□□□ 1.91
LSM4-201ENST00000252816 ZNF543Q08ER8 600 aa26.97■■□□□ 1.91
LSM4-201ENST00000252816 CCDC178Q5BJE1 867 aa26.97■■□□□ 1.91
LSM4-201ENST00000252816 CCDC174Q6PII3 467 aa26.97■■□□□ 1.91
LSM4-201ENST00000252816 ESYT1Q9BSJ8 1104 aa26.97■■□□□ 1.91
LSM4-201ENST00000252816 HOMER2Q9NSB8 354 aa26.97■■□□□ 1.91
LSM4-201ENST00000252816 DIS3Q9Y2L1 958 aaKnown RBP26.97■■□□□ 1.91
LSM4-201ENST00000252816 TNKSO95271 1327 aa26.96■■□□□ 1.91
LSM4-201ENST00000252816 DNAJC25-GNG10A0A024R161 153 aa26.96■■□□□ 1.91
LSM4-201ENST00000252816 PRAMEF19Q5SWL8 479 aa26.96■■□□□ 1.91
LSM4-201ENST00000252816 SYDE2Q5VT97 1194 aa26.96■■□□□ 1.91
LSM4-201ENST00000252816 PRPF38BQ5VTL8 546 aaKnown RBP26.96■■□□□ 1.91
LSM4-201ENST00000252816 CYB5R4Q7L1T6 521 aa26.96■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms