RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 VCAM1P19320 739 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 USP17L24Q0WX57 530 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 WTAPQ15007 396 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 NFKBIBQ15653 356 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 MB21D2Q8IYB1 491 aaPredicted RBP11.77□□□□□ -0.53
UPF1-213ENST00000601981 LRRC47Q8N1G4 583 aaKnown RBP11.77□□□□□ -0.53
UPF1-213ENST00000601981 TMTC2Q8N394 836 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 SMCR8Q8TEV9 937 aaPredicted RBP11.77□□□□□ -0.53
UPF1-213ENST00000601981 ZKSCAN3Q9BRR0 538 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 TANGO6Q9C0B7 1094 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 IL17RBQ9NRM6 502 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 EMILIN3Q9NT22 766 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 FOXD4L1Q9NU39 408 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 WBP1LQ9NX94 342 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 MYH6P13533 1939 aa11.76□□□□□ -0.53
UPF1-213ENST00000601981 F5H6K3 240 aa11.76□□□□□ -0.53
UPF1-213ENST00000601981 TRPA1O75762 1119 aa11.76□□□□□ -0.53
UPF1-213ENST00000601981 CPA1P15085 419 aa11.76□□□□□ -0.53
UPF1-213ENST00000601981 HOXA7P31268 230 aaPredicted RBP11.76□□□□□ -0.53
UPF1-213ENST00000601981 SLC1A4P43007 532 aa11.76□□□□□ -0.53
UPF1-213ENST00000601981 NOVP48745 357 aa11.76□□□□□ -0.53
UPF1-213ENST00000601981 NUCB2P80303 420 aa11.76□□□□□ -0.53
UPF1-213ENST00000601981 KLRC3Q07444 240 aa11.76□□□□□ -0.53
UPF1-213ENST00000601981 MOGSQ13724 837 aa11.76□□□□□ -0.53
UPF1-213ENST00000601981 TMEM67Q5HYA8 995 aa11.76□□□□□ -0.53
UPF1-213ENST00000601981 SLFN13Q68D06 897 aa11.76□□□□□ -0.53
UPF1-213ENST00000601981 CYB5R4Q7L1T6 521 aa11.76□□□□□ -0.53
UPF1-213ENST00000601981 DHX32Q7L7V1 743 aaKnown RBP11.76□□□□□ -0.53
UPF1-213ENST00000601981 SIAH1Q8IUQ4 282 aa11.76□□□□□ -0.53
UPF1-213ENST00000601981 SPICE1Q8N0Z3 855 aa11.76□□□□□ -0.53
UPF1-213ENST00000601981 FAM43AQ8N2R8 423 aa11.76□□□□□ -0.53
UPF1-213ENST00000601981 ENAHQ8N8S7 591 aaPredicted RBP11.76□□□□□ -0.53
UPF1-213ENST00000601981 DCAF4Q8WV16 495 aa11.76□□□□□ -0.53
UPF1-213ENST00000601981 PTPN18Q99952 460 aa11.76□□□□□ -0.53
UPF1-213ENST00000601981 TMEM47Q9BQJ4 181 aa11.76□□□□□ -0.53
UPF1-213ENST00000601981 RPAP3Q9H6T3 665 aaPredicted RBP11.76□□□□□ -0.53
UPF1-213ENST00000601981 RNF186Q9NXI6 227 aa11.76□□□□□ -0.53
UPF1-213ENST00000601981 CCDC69A6NI79 296 aa11.75□□□□□ -0.53
UPF1-213ENST00000601981 NDUFB10O96000 172 aa11.75□□□□□ -0.53
UPF1-213ENST00000601981 IKQ13123 557 aaPredicted RBP11.75□□□□□ -0.53
UPF1-213ENST00000601981 CCDC96Q2M329 555 aa11.75□□□□□ -0.53
UPF1-213ENST00000601981 TREML2Q5T2D2 321 aa11.75□□□□□ -0.53
UPF1-213ENST00000601981 GPAT2Q6NUI2 795 aa11.75□□□□□ -0.53
UPF1-213ENST00000601981 SYNE3Q6ZMZ3 975 aa11.75□□□□□ -0.53
UPF1-213ENST00000601981 NFXL1Q6ZNB6 911 aa11.75□□□□□ -0.53
UPF1-213ENST00000601981 NOL8Q76FK4 1167 aaKnown RBP11.75□□□□□ -0.53
UPF1-213ENST00000601981 CATIPQ7Z7H3 387 aa11.75□□□□□ -0.53
UPF1-213ENST00000601981 PNMA1Q8ND90 353 aa11.75□□□□□ -0.53
UPF1-213ENST00000601981 ANKS1AQ92625 1134 aa11.75□□□□□ -0.53
UPF1-213ENST00000601981 GMCL1Q96IK5 515 aa11.75□□□□□ -0.53
UPF1-213ENST00000601981 CFHR5Q9BXR6 569 aa11.75□□□□□ -0.53
UPF1-213ENST00000601981 FLOT1O75955 427 aa11.74□□□□□ -0.53
UPF1-213ENST00000601981 BMP3P12645 472 aa11.74□□□□□ -0.53
UPF1-213ENST00000601981 LIFRP42702 1097 aa11.74□□□□□ -0.53
UPF1-213ENST00000601981 GCLCP48506 637 aaPredicted RBP11.74□□□□□ -0.53
UPF1-213ENST00000601981 LBX1P52954 281 aa11.74□□□□□ -0.53
UPF1-213ENST00000601981 DGKZQ13574 1117 aa11.74□□□□□ -0.53
UPF1-213ENST00000601981 TOB2Q14106 344 aaPredicted RBP11.74□□□□□ -0.53
UPF1-213ENST00000601981 NBR1Q14596 966 aa11.74□□□□□ -0.53
UPF1-213ENST00000601981 COG2Q14746 738 aa11.74□□□□□ -0.53
UPF1-213ENST00000601981 FAM83BQ5T0W9 1011 aa11.74□□□□□ -0.53
UPF1-213ENST00000601981 GPATCH4Q5T3I0 446 aaKnown RBP11.74□□□□□ -0.53
UPF1-213ENST00000601981 RCSD1Q6JBY9 416 aa11.74□□□□□ -0.53
UPF1-213ENST00000601981 CATSPERGQ6ZRH7 1159 aa11.74□□□□□ -0.53
UPF1-213ENST00000601981 CHST3Q7LGC8 479 aa11.74□□□□□ -0.53
UPF1-213ENST00000601981 CHURC1Q8WUH1 139 aa11.74□□□□□ -0.53
UPF1-213ENST00000601981 ASCC2Q9H1I8 757 aaPredicted RBP11.74□□□□□ -0.53
UPF1-213ENST00000601981 HOXC10Q9NYD6 342 aa11.74□□□□□ -0.53
UPF1-213ENST00000601981 FEM1BQ9UK73 627 aa11.74□□□□□ -0.53
UPF1-213ENST00000601981 MTMR7Q9Y216 660 aa11.74□□□□□ -0.53
UPF1-213ENST00000601981 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.74□□□□□ -0.53
UPF1-213ENST00000601981 CTDP1Q9Y5B0 961 aaPredicted RBP11.74□□□□□ -0.53
UPF1-213ENST00000601981 MYPNQ86TC9 1320 aa11.74□□□□□ -0.53
UPF1-213ENST00000601981 COL11A1P12107 1806 aaPredicted RBP11.74□□□□□ -0.53
UPF1-213ENST00000601981 SH2B2O14492 632 aaPredicted RBP11.73□□□□□ -0.53
UPF1-213ENST00000601981 MGAMO43451 1857 aa11.73□□□□□ -0.53
UPF1-213ENST00000601981 TLR2O60603 784 aa11.73□□□□□ -0.53
UPF1-213ENST00000601981 CALM1P0DP23 149 aa11.73□□□□□ -0.53
UPF1-213ENST00000601981 CALM2P0DP24 149 aa11.73□□□□□ -0.53
UPF1-213ENST00000601981 CALM3P0DP25 149 aa11.73□□□□□ -0.53
UPF1-213ENST00000601981 STAT2P52630 851 aa11.73□□□□□ -0.53
UPF1-213ENST00000601981 ANTXR2P58335 489 aa11.73□□□□□ -0.53
UPF1-213ENST00000601981 EXOSC10Q01780 885 aaKnown RBP11.73□□□□□ -0.53
UPF1-213ENST00000601981 RLFQ13129 1914 aa11.73□□□□□ -0.53
UPF1-213ENST00000601981 CRHR2Q13324 411 aa11.73□□□□□ -0.53
UPF1-213ENST00000601981 SEC23AQ15436 765 aa11.73□□□□□ -0.53
UPF1-213ENST00000601981 FAM160B2Q86V87 743 aa11.73□□□□□ -0.53
UPF1-213ENST00000601981 FBXL16Q8N461 479 aa11.73□□□□□ -0.53
UPF1-213ENST00000601981 MB21D1Q8N884 522 aa11.73□□□□□ -0.53
UPF1-213ENST00000601981 AGXT2Q9BYV1 514 aa11.73□□□□□ -0.53
UPF1-213ENST00000601981 A0A0G2JMZ2 1700 aa11.72□□□□□ -0.53
UPF1-213ENST00000601981 DDAH1O94760 285 aa11.72□□□□□ -0.53
UPF1-213ENST00000601981 LARGE1O95461 756 aa11.72□□□□□ -0.53
UPF1-213ENST00000601981 TBC1D8O95759 1140 aa11.72□□□□□ -0.53
UPF1-213ENST00000601981 PARP1P09874 1014 aaKnown RBP11.72□□□□□ -0.53
UPF1-213ENST00000601981 FDX1P10109 184 aa11.72□□□□□ -0.53
UPF1-213ENST00000601981 CYP2C8P10632 490 aa11.72□□□□□ -0.53
UPF1-213ENST00000601981 PDHBP11177 359 aa11.72□□□□□ -0.53
UPF1-213ENST00000601981 KIF5BP33176 963 aa11.72□□□□□ -0.53
UPF1-213ENST00000601981 HERVK_113P62684 666 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms