RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	PTMA	P06454	111 aa	Known RBP	13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	EEF2	P13639	858 aa	Known RBP	13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	GUCY1A2	P33402	732 aa		13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	AKAP17A	Q02040	695 aa	Known RBP	13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	SUPT20HL1	Q3ZLR7	823 aa		13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	IFFO2	Q5TF58	517 aa		13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	TMTC3	Q6ZXV5	915 aa		13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	CLEC10A	Q8IUN9	316 aa		13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	SULF1	Q8IWU6	871 aa		13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	FAM200A	Q8TCP9	573 aa		13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	LZTS2	Q9BRK4	669 aa		13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	SLC26A6	Q9BXS9	759 aa		13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	RNF26	Q9BY78	433 aa	Predicted RBP	13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	ZBTB21	Q9ULJ3	1066 aa		13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	PHF20L1	A8MW92	1017 aa		13.47	□□□□□ -0.25
VRK3-223	ENST00000601341	ASNS	P08243	561 aa		13.47	□□□□□ -0.25
VRK3-223	ENST00000601341	PARP1	P09874	1014 aa	Known RBP	13.47	□□□□□ -0.25
VRK3-223	ENST00000601341	JAG1	P78504	1218 aa		13.47	□□□□□ -0.25
VRK3-223	ENST00000601341	SHROOM1	Q2M3G4	852 aa	Predicted RBP	13.47	□□□□□ -0.25
VRK3-223	ENST00000601341	NBPF11	Q86T75	865 aa		13.47	□□□□□ -0.25
VRK3-223	ENST00000601341	LRRC47	Q8N1G4	583 aa	Known RBP	13.47	□□□□□ -0.25
VRK3-223	ENST00000601341	CCDC82	Q8N4S0	544 aa		13.47	□□□□□ -0.25
VRK3-223	ENST00000601341	GINM1	Q9NU53	330 aa		13.47	□□□□□ -0.25
VRK3-223	ENST00000601341	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.47	□□□□□ -0.25
VRK3-223	ENST00000601341	MAD2L2	Q9UI95	211 aa		13.47	□□□□□ -0.25
VRK3-223	ENST00000601341	SYNPO2	Q9UMS6	1093 aa		13.47	□□□□□ -0.25
VRK3-223	ENST00000601341	MTMR7	Q9Y216	660 aa		13.47	□□□□□ -0.25
VRK3-223	ENST00000601341	MYH8	P13535	1937 aa		13.46	□□□□□ -0.25
VRK3-223	ENST00000601341	PALM3	A6NDB9	673 aa	Predicted RBP	13.46	□□□□□ -0.25
VRK3-223	ENST00000601341	CTAGE5	O15320	804 aa		13.46	□□□□□ -0.25
VRK3-223	ENST00000601341	PLEKHA8P1	O95397	391 aa		13.46	□□□□□ -0.25
VRK3-223	ENST00000601341	DEXI	O95424	95 aa		13.46	□□□□□ -0.25
VRK3-223	ENST00000601341	ADCY5	O95622	1261 aa		13.46	□□□□□ -0.25
VRK3-223	ENST00000601341	FUT2	Q10981	343 aa		13.46	□□□□□ -0.25
VRK3-223	ENST00000601341	PNMA8A	Q86V59	439 aa	Predicted RBP	13.46	□□□□□ -0.25
VRK3-223	ENST00000601341	SIAH1	Q8IUQ4	282 aa		13.46	□□□□□ -0.25
VRK3-223	ENST00000601341	CMTR1	Q8N1G2	835 aa	Known RBP	13.46	□□□□□ -0.25
VRK3-223	ENST00000601341	ZNF341	Q9BYN7	854 aa		13.46	□□□□□ -0.25
VRK3-223	ENST00000601341	CLSTN2	Q9H4D0	955 aa		13.46	□□□□□ -0.25
VRK3-223	ENST00000601341	TAF1D	Q9H5J8	278 aa	Predicted RBP	13.46	□□□□□ -0.25
VRK3-223	ENST00000601341	PRPF3	O43395	683 aa	Known RBP	13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	CTNND1	O60716	968 aa	Known RBP	13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	SNHG28	P0DPA3	235 aa		13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	PDHB	P11177	359 aa		13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	PRAMEF18	Q5VWM3	479 aa		13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	KRT26	Q7Z3Y9	468 aa		13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	FERMT3	Q86UX7	667 aa		13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	STAG2	Q8N3U4	1231 aa		13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	SRBD1	Q8N5C6	995 aa	Known RBP	13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	C8orf76	Q96K31	380 aa		13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	ALG1	Q9BT22	464 aa		13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	TNMD	Q9H2S6	317 aa		13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	ARHGEF10L	Q9HCE6	1279 aa		13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	RCOR1	Q9UKL0	485 aa		13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	GREB1L	Q9C091	1923 aa	Predicted RBP	13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	USP17L5	A8MUK1	530 aa		13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	GOLGA6L6	A8MZA4	724 aa		13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	KLRF2	D3W0D1	207 aa		13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	SMARCA1	P28370	1054 aa		13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	ASPRV1	Q53RT3	343 aa		13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	USP17L2	Q6R6M4	530 aa		13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	ZNF396	Q96N95	335 aa	Predicted RBP	13.45	□□□□□ -0.26
VRK3-223	ENST00000601341		V9GY48	417 aa	Predicted RBP	13.45	□□□□□ -0.26
VRK3-223	ENST00000601341	POTEC	B2RU33	542 aa		13.44	□□□□□ -0.26
VRK3-223	ENST00000601341	GOLGA8H	P0CJ92	632 aa		13.44	□□□□□ -0.26
VRK3-223	ENST00000601341	TYRO3	Q06418	890 aa		13.44	□□□□□ -0.26
VRK3-223	ENST00000601341	TRIM29	Q14134	588 aa		13.44	□□□□□ -0.26
VRK3-223	ENST00000601341	EAPP	Q56P03	285 aa	Predicted RBP	13.44	□□□□□ -0.26
VRK3-223	ENST00000601341	GPATCH4	Q5T3I0	446 aa	Known RBP	13.44	□□□□□ -0.26
VRK3-223	ENST00000601341	GMCL1P1	Q8NEA9	526 aa		13.44	□□□□□ -0.26
VRK3-223	ENST00000601341	FBXO18	Q8NFZ0	1043 aa		13.44	□□□□□ -0.26
VRK3-223	ENST00000601341	PIBF1	Q8WXW3	757 aa		13.44	□□□□□ -0.26
VRK3-223	ENST00000601341	SH2D4A	Q9H788	454 aa		13.44	□□□□□ -0.26
VRK3-223	ENST00000601341	DACT1	Q9NYF0	836 aa		13.44	□□□□□ -0.26
VRK3-223	ENST00000601341	ZNF112	Q9UJU3	913 aa		13.44	□□□□□ -0.26
VRK3-223	ENST00000601341	CNTNAP5	Q8WYK1	1306 aa		13.44	□□□□□ -0.26
VRK3-223	ENST00000601341	LIG1	P18858	919 aa		13.43	□□□□□ -0.26
VRK3-223	ENST00000601341	ZNF543	Q08ER8	600 aa		13.43	□□□□□ -0.26
VRK3-223	ENST00000601341	SLFN13	Q68D06	897 aa		13.43	□□□□□ -0.26
VRK3-223	ENST00000601341	DCAF4	Q8WV16	495 aa		13.43	□□□□□ -0.26
VRK3-223	ENST00000601341	SPZ1	Q9BXG8	430 aa		13.43	□□□□□ -0.26
VRK3-223	ENST00000601341	TMX2	Q9Y320	296 aa		13.43	□□□□□ -0.26
VRK3-223	ENST00000601341	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	13.43	□□□□□ -0.26	5e-6	■■■■□ 19.3
VRK3-223	ENST00000601341	ADM5	C9JUS6	153 aa		13.43	□□□□□ -0.26
VRK3-223	ENST00000601341		F5H6K3	240 aa		13.43	□□□□□ -0.26
VRK3-223	ENST00000601341	RRP9	O43818	475 aa	Known RBP	13.43	□□□□□ -0.26
VRK3-223	ENST00000601341	RAD21	O60216	631 aa		13.43	□□□□□ -0.26
VRK3-223	ENST00000601341	XBP1	P17861	261 aa		13.43	□□□□□ -0.26
VRK3-223	ENST00000601341	FOSB	P53539	338 aa		13.43	□□□□□ -0.26
VRK3-223	ENST00000601341	KLRC3	Q07444	240 aa		13.43	□□□□□ -0.26
VRK3-223	ENST00000601341	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	13.43	□□□□□ -0.26
VRK3-223	ENST00000601341	GMCL1	Q96IK5	515 aa		13.43	□□□□□ -0.26
VRK3-223	ENST00000601341	WRNIP1	Q96S55	665 aa		13.43	□□□□□ -0.26
VRK3-223	ENST00000601341	MRVI1	Q9Y6F6	885 aa		13.43	□□□□□ -0.26
VRK3-223	ENST00000601341	SCN4A	P35499	1836 aa		13.42	□□□□□ -0.26
VRK3-223	ENST00000601341		A0A1W2PRG0	241 aa		13.42	□□□□□ -0.26
VRK3-223	ENST00000601341	PPP1R12B	O60237	982 aa	Predicted RBP	13.42	□□□□□ -0.26
VRK3-223	ENST00000601341	VEGFA	P15692	232 aa	Predicted RBP	13.42	□□□□□ -0.26
VRK3-223	ENST00000601341	SLC1A4	P43007	532 aa		13.42	□□□□□ -0.26
VRK3-223	ENST00000601341	GUCY1B3	Q02153	619 aa		13.42	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms