RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 KCNH3Q9ULD8 1083 aa16.24■□□□□ 0.19
LIG3-205ENST00000585941 SIPA1L1O43166 1804 aa16.24■□□□□ 0.19
LIG3-205ENST00000585941 SNHG28P0DPA3 235 aa16.24■□□□□ 0.19
LIG3-205ENST00000585941 PDHBP11177 359 aa16.24■□□□□ 0.19
LIG3-205ENST00000585941 TTC38Q5R3I4 469 aa16.24■□□□□ 0.19
LIG3-205ENST00000585941 METTL16Q86W50 562 aaKnown RBP16.24■□□□□ 0.19
LIG3-205ENST00000585941 ZSCAN29Q8IWY8 852 aaPredicted RBP16.24■□□□□ 0.19
LIG3-205ENST00000585941 MTFR1LQ9H019 292 aa16.24■□□□□ 0.19
LIG3-205ENST00000585941 CBX8Q9HC52 389 aa16.24■□□□□ 0.19
LIG3-205ENST00000585941 SOCS7O14512 581 aa16.23■□□□□ 0.19
LIG3-205ENST00000585941 MMP14P50281 582 aa16.23■□□□□ 0.19
LIG3-205ENST00000585941 GPATCH4Q5T3I0 446 aaKnown RBP16.23■□□□□ 0.19
LIG3-205ENST00000585941 USP17L2Q6R6M4 530 aa16.23■□□□□ 0.19
LIG3-205ENST00000585941 HEATR3Q7Z4Q2 680 aa16.23■□□□□ 0.19
LIG3-205ENST00000585941 OGFOD1Q8N543 542 aa16.23■□□□□ 0.19
LIG3-205ENST00000585941 PIBF1Q8WXW3 757 aa16.23■□□□□ 0.19
LIG3-205ENST00000585941 CCDC34Q96HJ3 373 aa16.23■□□□□ 0.19
LIG3-205ENST00000585941 CLIC6Q96NY7 704 aa16.23■□□□□ 0.19
LIG3-205ENST00000585941 RIOX1Q9H6W3 641 aa16.23■□□□□ 0.19
LIG3-205ENST00000585941 CLIP2Q9UDT6 1046 aa16.23■□□□□ 0.19
LIG3-205ENST00000585941 CCDC39Q9UFE4 941 aa16.23■□□□□ 0.19
LIG3-205ENST00000585941 ZNRF3Q9ULT6 936 aa16.23■□□□□ 0.19
LIG3-205ENST00000585941 MTMR7Q9Y216 660 aa16.23■□□□□ 0.19
LIG3-205ENST00000585941 STXBP3O00186 592 aa16.22■□□□□ 0.19
LIG3-205ENST00000585941 GOLGA8HP0CJ92 632 aa16.22■□□□□ 0.19
LIG3-205ENST00000585941 GNA11P29992 359 aa16.22■□□□□ 0.19
LIG3-205ENST00000585941 TCP10Q12799 353 aa16.22■□□□□ 0.19
LIG3-205ENST00000585941 WWC2Q6AWC2 1192 aa16.22■□□□□ 0.19
LIG3-205ENST00000585941 KANK3Q6NY19 840 aa16.22■□□□□ 0.19
LIG3-205ENST00000585941 TATDN1Q6P1N9 297 aa16.22■□□□□ 0.19
LIG3-205ENST00000585941 NIM1KQ8IY84 436 aa16.22■□□□□ 0.19
LIG3-205ENST00000585941 CEP57L1Q8IYX8 460 aa16.22■□□□□ 0.19
LIG3-205ENST00000585941 AGBL3Q8NEM8 1001 aa16.22■□□□□ 0.19
LIG3-205ENST00000585941 GPKOWQ92917 476 aaPredicted RBP eCLIP16.22■□□□□ 0.19
LIG3-205ENST00000585941 GMLQ99445 158 aa16.22■□□□□ 0.19
LIG3-205ENST00000585941 DNAJC25Q9H1X3 360 aa16.22■□□□□ 0.19
LIG3-205ENST00000585941 KANSL2Q9H9L4 492 aa16.22■□□□□ 0.19
LIG3-205ENST00000585941 USP25Q9UHP3 1055 aa16.22■□□□□ 0.19
LIG3-205ENST00000585941 CCDC194A0A1B0GVG4 234 aa16.21■□□□□ 0.19
LIG3-205ENST00000585941 ESYT2A0FGR8 921 aa16.21■□□□□ 0.19
LIG3-205ENST00000585941 USP17L5A8MUK1 530 aa16.21■□□□□ 0.19
LIG3-205ENST00000585941 MPHOSPH10O00566 681 aaKnown RBP16.21■□□□□ 0.19
LIG3-205ENST00000585941 ATP2B1P20020 1258 aa16.21■□□□□ 0.19
LIG3-205ENST00000585941 SLC35G1Q2M3R5 365 aa16.21■□□□□ 0.19
LIG3-205ENST00000585941 CERKLQ49MI3 558 aaPredicted RBP16.21■□□□□ 0.19
LIG3-205ENST00000585941 DALRD3Q5D0E6 543 aaKnown RBP16.21■□□□□ 0.19
LIG3-205ENST00000585941 EARS2Q5JPH6 523 aaKnown RBP16.21■□□□□ 0.19
LIG3-205ENST00000585941 PIK3AP1Q6ZUJ8 805 aa16.21■□□□□ 0.19
LIG3-205ENST00000585941 ZFPM1Q8IX07 1006 aa16.21■□□□□ 0.19
LIG3-205ENST00000585941 ZMYND12Q9H0C1 365 aa16.21■□□□□ 0.19
LIG3-205ENST00000585941 TDRD3Q9H7E2 651 aaKnown RBP16.21■□□□□ 0.19
LIG3-205ENST00000585941 C6orf50Q9HD87 102 aa16.21■□□□□ 0.19
LIG3-205ENST00000585941 ZNF277Q9NRM2 450 aaPredicted RBP16.21■□□□□ 0.19
LIG3-205ENST00000585941 NYAP2Q9P242 653 aa16.21■□□□□ 0.19
LIG3-205ENST00000585941 BRCA1P38398 1863 aaKnown RBP16.21■□□□□ 0.18
LIG3-205ENST00000585941 DDTLA6NHG4 134 aaPredicted RBP16.21■□□□□ 0.18
LIG3-205ENST00000585941 SPDYE2BA6NHP3 402 aa16.21■□□□□ 0.18
LIG3-205ENST00000585941 M0R2N6 131 aa16.21■□□□□ 0.18
LIG3-205ENST00000585941 PSMD14O00487 310 aa16.21■□□□□ 0.18
LIG3-205ENST00000585941 ADCY5O95622 1261 aa16.21■□□□□ 0.18
LIG3-205ENST00000585941 SPDYE6P0CI01 402 aa16.21■□□□□ 0.18
LIG3-205ENST00000585941 ATP2C1P98194 919 aaPredicted RBP16.21■□□□□ 0.18
LIG3-205ENST00000585941 ZNF543Q08ER8 600 aa16.21■□□□□ 0.18
LIG3-205ENST00000585941 DLGAP5Q15398 846 aa16.21■□□□□ 0.18
LIG3-205ENST00000585941 FKBP1CQ5VVH2 108 aa16.21■□□□□ 0.18
LIG3-205ENST00000585941 ARL6IP4Q66PJ3 421 aaKnown RBP16.21■□□□□ 0.18
LIG3-205ENST00000585941 TMEM179Q6ZVK1 233 aa16.21■□□□□ 0.18
LIG3-205ENST00000585941 MKL1Q969V6 931 aa16.21■□□□□ 0.18
LIG3-205ENST00000585941 PRMT6Q96LA8 375 aaPredicted RBP16.21■□□□□ 0.18
LIG3-205ENST00000585941 PYM1Q9BRP8 204 aaKnown RBP16.21■□□□□ 0.18
LIG3-205ENST00000585941 PCDHAC2Q9Y5I4 1007 aa16.21■□□□□ 0.18
LIG3-205ENST00000585941 FAM205CA6NFA0 338 aa16.2■□□□□ 0.18
LIG3-205ENST00000585941 GOLGA6L19H0YKK7 550 aa16.2■□□□□ 0.18
LIG3-205ENST00000585941 VEGFAP15692 232 aaPredicted RBP16.2■□□□□ 0.18
LIG3-205ENST00000585941 CACNB3P54284 484 aa16.2■□□□□ 0.18
LIG3-205ENST00000585941 NAPAP54920 295 aa16.2■□□□□ 0.18
LIG3-205ENST00000585941 KRBA2Q6ZNG9 492 aa16.2■□□□□ 0.18
LIG3-205ENST00000585941 SH3BP5LQ7L8J4 393 aa16.2■□□□□ 0.18
LIG3-205ENST00000585941 LUZP1Q86V48 1076 aa16.2■□□□□ 0.18
LIG3-205ENST00000585941 LRRC47Q8N1G4 583 aaKnown RBP16.2■□□□□ 0.18
LIG3-205ENST00000585941 MTMR14Q8NCE2 650 aa16.2■□□□□ 0.18
LIG3-205ENST00000585941 CNNM3Q8NE01 707 aa16.2■□□□□ 0.18
LIG3-205ENST00000585941 BPIFA3Q9BQP9 254 aa16.2■□□□□ 0.18
LIG3-205ENST00000585941 DNAJC18Q9H819 358 aa16.2■□□□□ 0.18
LIG3-205ENST00000585941 HERC5Q9UII4 1024 aaKnown RBP16.2■□□□□ 0.18
LIG3-205ENST00000585941 FER1L6Q2WGJ9 1857 aa16.2■□□□□ 0.18
LIG3-205ENST00000585941 ESPNB1AK53 854 aa16.19■□□□□ 0.18
LIG3-205ENST00000585941 NLRP12P59046 1061 aa16.19■□□□□ 0.18
LIG3-205ENST00000585941 PPP1R18Q6NYC8 613 aa16.19■□□□□ 0.18
LIG3-205ENST00000585941 KRT25Q7Z3Z0 450 aa16.19■□□□□ 0.18
LIG3-205ENST00000585941 TUBE1Q9UJT0 475 aa16.19■□□□□ 0.18
LIG3-205ENST00000585941 SYNPO2Q9UMS6 1093 aa16.19■□□□□ 0.18
LIG3-205ENST00000585941 LAD1O00515 517 aa16.18■□□□□ 0.18
LIG3-205ENST00000585941 RAD17O75943 681 aa16.18■□□□□ 0.18
LIG3-205ENST00000585941 ZBTB7AO95365 584 aa16.18■□□□□ 0.18
LIG3-205ENST00000585941 PTGDRQ13258 359 aa16.18■□□□□ 0.18
LIG3-205ENST00000585941 ORC2Q13416 577 aaPredicted RBP16.18■□□□□ 0.18
LIG3-205ENST00000585941 ZNF174Q15697 407 aa16.18■□□□□ 0.18
LIG3-205ENST00000585941 TYW1BQ6NUM6 668 aa16.18■□□□□ 0.18
LIG3-205ENST00000585941 DCAF4Q8WV16 495 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms