RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 FAN1Q9Y2M0 1017 aa13.77□□□□□ -0.2
SHMT1-208ENST00000582352 LRRC10BA6NIK2 292 aa13.77□□□□□ -0.21
SHMT1-208ENST00000582352 GTPBP6O43824 516 aaPredicted RBP13.77□□□□□ -0.21
SHMT1-208ENST00000582352 CALM1P0DP23 149 aa13.77□□□□□ -0.21
SHMT1-208ENST00000582352 CALM2P0DP24 149 aa13.77□□□□□ -0.21
SHMT1-208ENST00000582352 CALM3P0DP25 149 aa13.77□□□□□ -0.21
SHMT1-208ENST00000582352 FUT2Q10981 343 aa13.77□□□□□ -0.21
SHMT1-208ENST00000582352 CCDC148Q8NFR7 591 aa13.77□□□□□ -0.21
SHMT1-208ENST00000582352 ANAPC4Q9UJX5 808 aa13.77□□□□□ -0.21
SHMT1-208ENST00000582352 DUOX1Q9NRD9 1551 aa13.77□□□□□ -0.21
SHMT1-208ENST00000582352 MAGEB6P1A0A0J9YX57 407 aa13.77□□□□□ -0.21
SHMT1-208ENST00000582352 ERVV-1B6SEH8 477 aa13.77□□□□□ -0.21
SHMT1-208ENST00000582352 N4BP1O75113 896 aaKnown RBP13.77□□□□□ -0.21
SHMT1-208ENST00000582352 IVLP07476 585 aa13.77□□□□□ -0.21
SHMT1-208ENST00000582352 UBXN1Q04323 297 aa13.77□□□□□ -0.21
SHMT1-208ENST00000582352 E2F4Q16254 413 aa13.77□□□□□ -0.21
SHMT1-208ENST00000582352 NOA1Q8NC60 698 aaKnown RBP13.77□□□□□ -0.21
SHMT1-208ENST00000582352 FAM71BQ8TC56 605 aa13.77□□□□□ -0.21
SHMT1-208ENST00000582352 ZBTB9Q96C00 473 aa13.77□□□□□ -0.21
SHMT1-208ENST00000582352 ITGB4P16144 1822 aa13.76□□□□□ -0.21
SHMT1-208ENST00000582352 NOM1Q5C9Z4 860 aaKnown RBP13.76□□□□□ -0.21
SHMT1-208ENST00000582352 NCAPH2Q6IBW4 605 aa13.76□□□□□ -0.21
SHMT1-208ENST00000582352 PDXDC2PQ6P474 469 aa13.76□□□□□ -0.21
SHMT1-208ENST00000582352 TNFRSF25Q93038 417 aa13.76□□□□□ -0.21
SHMT1-208ENST00000582352 ABCF2Q9UG63 623 aa13.76□□□□□ -0.21
SHMT1-208ENST00000582352 GUCA1BQ9UMX6 200 aa13.76□□□□□ -0.21
SHMT1-208ENST00000582352 RNF225M0QZC1 329 aaPredicted RBP13.76□□□□□ -0.21
SHMT1-208ENST00000582352 NDUFA10O95299 355 aa13.76□□□□□ -0.21
SHMT1-208ENST00000582352 IGHMBP2P38935 993 aaKnown RBP13.76□□□□□ -0.21
SHMT1-208ENST00000582352 AMPD2Q01433 879 aa13.76□□□□□ -0.21
SHMT1-208ENST00000582352 ZNF658Q5TYW1 1059 aaPredicted RBP13.76□□□□□ -0.21
SHMT1-208ENST00000582352 ADGRA1Q86SQ6 560 aa13.76□□□□□ -0.21
SHMT1-208ENST00000582352 RASSF4Q9H2L5 321 aa13.76□□□□□ -0.21
SHMT1-208ENST00000582352 DISP2A7MBM2 1401 aa13.76□□□□□ -0.21
SHMT1-208ENST00000582352 SOS2Q07890 1332 aaPredicted RBP13.75□□□□□ -0.21
SHMT1-208ENST00000582352 PES1O00541 588 aaKnown RBP13.75□□□□□ -0.21
SHMT1-208ENST00000582352 DDAH1O94760 285 aa13.75□□□□□ -0.21
SHMT1-208ENST00000582352 MCM7P33993 719 aa13.75□□□□□ -0.21
SHMT1-208ENST00000582352 TSR1Q2NL82 804 aaKnown RBP13.75□□□□□ -0.21
SHMT1-208ENST00000582352 WDR93Q6P2C0 686 aa13.75□□□□□ -0.21
SHMT1-208ENST00000582352 PIK3AP1Q6ZUJ8 805 aa13.75□□□□□ -0.21
SHMT1-208ENST00000582352 TMTC3Q6ZXV5 915 aa13.75□□□□□ -0.21
SHMT1-208ENST00000582352 BRINP3Q76B58 766 aa13.75□□□□□ -0.21
SHMT1-208ENST00000582352 ZNF34Q8IZ26 560 aa13.75□□□□□ -0.21
SHMT1-208ENST00000582352 MED4Q9NPJ6 270 aa13.75□□□□□ -0.21
SHMT1-208ENST00000582352 IQSEC3Q9UPP2 1182 aaPredicted RBP13.75□□□□□ -0.21
SHMT1-208ENST00000582352 EPN1Q9Y6I3 576 aaPredicted RBP13.75□□□□□ -0.21
SHMT1-208ENST00000582352 NHSL1Q5SYE7 1610 aa13.75□□□□□ -0.21
SHMT1-208ENST00000582352 KAT6BQ8WYB5 2073 aa13.75□□□□□ -0.21
SHMT1-208ENST00000582352 MYO1CO00159 1063 aa13.75□□□□□ -0.21
SHMT1-208ENST00000582352 RPN1P04843 607 aaKnown RBP13.75□□□□□ -0.21
SHMT1-208ENST00000582352 TRAPPC10P48553 1259 aa13.75□□□□□ -0.21
SHMT1-208ENST00000582352 TRIM34Q9BYJ4 488 aa13.75□□□□□ -0.21
SHMT1-208ENST00000582352 CNTNAP5Q8WYK1 1306 aa13.75□□□□□ -0.21
SHMT1-208ENST00000582352 PHACTR2O75167 634 aa13.74□□□□□ -0.21
SHMT1-208ENST00000582352 MCM3P25205 808 aa13.74□□□□□ -0.21
SHMT1-208ENST00000582352 NLRP5P59047 1200 aa13.74□□□□□ -0.21
SHMT1-208ENST00000582352 TROAPQ12815 778 aa13.74□□□□□ -0.21
SHMT1-208ENST00000582352 NPY5RQ15761 445 aa13.74□□□□□ -0.21
SHMT1-208ENST00000582352 GOLGA6L1Q8N7Z2 621 aa13.74□□□□□ -0.21
SHMT1-208ENST00000582352 CTCFLQ8NI51 663 aaPredicted RBP13.74□□□□□ -0.21
SHMT1-208ENST00000582352 HAUS4Q9H6D7 363 aa13.74□□□□□ -0.21
SHMT1-208ENST00000582352 MAPK8IP1Q9UQF2 711 aa13.74□□□□□ -0.21
SHMT1-208ENST00000582352 COL22A1Q8NFW1 1626 aaPredicted RBP13.74□□□□□ -0.21
SHMT1-208ENST00000582352 SMIM22K7EJ46 135 aa13.74□□□□□ -0.21
SHMT1-208ENST00000582352 IL6STP40189 918 aaPredicted RBP13.74□□□□□ -0.21
SHMT1-208ENST00000582352 MAP9Q49MG5 647 aa13.74□□□□□ -0.21
SHMT1-208ENST00000582352 CCDC152Q4G0S7 254 aa13.74□□□□□ -0.21
SHMT1-208ENST00000582352 SRLQ86TD4 932 aa13.74□□□□□ -0.21
SHMT1-208ENST00000582352 OR8K1Q8NGG5 319 aa13.74□□□□□ -0.21
SHMT1-208ENST00000582352 SLC4A9Q96Q91 983 aa13.74□□□□□ -0.21
SHMT1-208ENST00000582352 CHP1Q99653 195 aa13.74□□□□□ -0.21
SHMT1-208ENST00000582352 MTRQ99707 1265 aa13.74□□□□□ -0.21
SHMT1-208ENST00000582352 RNF216Q9NWF9 866 aaPredicted RBP13.74□□□□□ -0.21
SHMT1-208ENST00000582352 TRIM10Q9UDY6 481 aa13.74□□□□□ -0.21
SHMT1-208ENST00000582352 GDAQ9Y2T3 454 aa13.74□□□□□ -0.21
SHMT1-208ENST00000582352 LUC7L2Q9Y383 392 aaKnown RBP13.74□□□□□ -0.21
SHMT1-208ENST00000582352 BAZ2AQ9UIF9 1905 aaKnown RBP13.74□□□□□ -0.21
SHMT1-208ENST00000582352 PSMD14O00487 310 aa13.73□□□□□ -0.21
SHMT1-208ENST00000582352 STAT6P42226 847 aa13.73□□□□□ -0.21
SHMT1-208ENST00000582352 TRAPPC11Q7Z392 1133 aa13.73□□□□□ -0.21
SHMT1-208ENST00000582352 C10orf67Q8IYJ2 551 aa13.73□□□□□ -0.21
SHMT1-208ENST00000582352 RRP15Q9Y3B9 282 aaKnown RBP13.73□□□□□ -0.21
SHMT1-208ENST00000582352 SLIT2O94813 1529 aa13.73□□□□□ -0.21
SHMT1-208ENST00000582352 CICQ96RK0 1608 aaPredicted RBP13.73□□□□□ -0.21
SHMT1-208ENST00000582352 ABCA3Q99758 1704 aa13.73□□□□□ -0.21
SHMT1-208ENST00000582352 CYP2D7A0A087X1C5 515 aa13.73□□□□□ -0.21
SHMT1-208ENST00000582352 TTC26A0AVF1 554 aa13.73□□□□□ -0.21
SHMT1-208ENST00000582352 LRRIQ3A6PVS8 624 aaPredicted RBP13.73□□□□□ -0.21
SHMT1-208ENST00000582352 VGLL3A8MV65 326 aa13.73□□□□□ -0.21
SHMT1-208ENST00000582352 H7C1D1 291 aa13.73□□□□□ -0.21
SHMT1-208ENST00000582352 PRCPP42785 496 aa13.73□□□□□ -0.21
SHMT1-208ENST00000582352 TNNT3P45378 269 aaPredicted RBP13.73□□□□□ -0.21
SHMT1-208ENST00000582352 EHBP1Q8NDI1 1231 aa13.73□□□□□ -0.21
SHMT1-208ENST00000582352 RASSF8Q8NHQ8 419 aa13.73□□□□□ -0.21
SHMT1-208ENST00000582352 LCMT1Q9UIC8 334 aa13.73□□□□□ -0.21
SHMT1-208ENST00000582352 REXO2Q9Y3B8 237 aaKnown RBP13.73□□□□□ -0.21
SHMT1-208ENST00000582352 DLEC1Q9Y238 1755 aa13.73□□□□□ -0.21
SHMT1-208ENST00000582352 LGALS16A8MUM7 142 aa13.72□□□□□ -0.21
SHMT1-208ENST00000582352 ENC1O14682 589 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms