RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 OVOS1Q6IE37 1185 aa4.98□□□□□ -1.61
VPS35-207ENST00000568191 TMEM132EQ6IEE7 984 aa4.98□□□□□ -1.61
VPS35-207ENST00000568191 IRF2BP1Q8IU81 584 aa4.98□□□□□ -1.61
VPS35-207ENST00000568191 SLITRK4Q8IW52 837 aa4.98□□□□□ -1.61
VPS35-207ENST00000568191 KCNN1Q92952 543 aa4.98□□□□□ -1.61
VPS35-207ENST00000568191 ATG4CQ96DT6 458 aa4.98□□□□□ -1.61
VPS35-207ENST00000568191 TCAF2A6NFQ2 919 aa4.97□□□□□ -1.61
VPS35-207ENST00000568191 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.97□□□□□ -1.61
VPS35-207ENST00000568191 DNAJA2O60884 412 aa4.97□□□□□ -1.61
VPS35-207ENST00000568191 UBOX5O94941 541 aa4.97□□□□□ -1.61
VPS35-207ENST00000568191 PDE6BP35913 854 aa4.97□□□□□ -1.61
VPS35-207ENST00000568191 MFAP1P55081 439 aaKnown RBP4.97□□□□□ -1.61
VPS35-207ENST00000568191 ERVFC1P60507 584 aa4.97□□□□□ -1.61
VPS35-207ENST00000568191 CLCQ05315 142 aa4.97□□□□□ -1.61
VPS35-207ENST00000568191 NBPF9Q3BBW0 867 aa4.97□□□□□ -1.61
VPS35-207ENST00000568191 WAPLQ7Z5K2 1190 aa4.97□□□□□ -1.61
VPS35-207ENST00000568191 USP48Q86UV5 1035 aa4.97□□□□□ -1.61
VPS35-207ENST00000568191 RNF34Q969K3 372 aa4.97□□□□□ -1.61
VPS35-207ENST00000568191 FERD3LQ96RJ6 166 aa4.97□□□□□ -1.61
VPS35-207ENST00000568191 MKRN2Q9H000 416 aaKnown RBP4.97□□□□□ -1.61
VPS35-207ENST00000568191 GPR160Q9UJ42 338 aa4.97□□□□□ -1.61
VPS35-207ENST00000568191 FBXL21Q9UKT6 434 aa4.97□□□□□ -1.61
VPS35-207ENST00000568191 TCFL5Q9UL49 500 aa4.97□□□□□ -1.61
VPS35-207ENST00000568191 NME1P15531 152 aaKnown RBP4.96□□□□□ -1.62
VPS35-207ENST00000568191 CRKP46108 304 aa4.96□□□□□ -1.62
VPS35-207ENST00000568191 TEKQ02763 1124 aa4.96□□□□□ -1.62
VPS35-207ENST00000568191 INTS3Q68E01 1043 aaKnown RBP4.96□□□□□ -1.62
VPS35-207ENST00000568191 HOMEZQ8IX15 550 aa4.96□□□□□ -1.62
VPS35-207ENST00000568191 LINC00116Q8NCU8 138 aa4.96□□□□□ -1.62
VPS35-207ENST00000568191 VWCEQ96DN2 955 aa4.96□□□□□ -1.62
VPS35-207ENST00000568191 TCTN2Q96GX1 697 aa4.96□□□□□ -1.62
VPS35-207ENST00000568191 SPATA32Q96LK8 384 aa4.96□□□□□ -1.62
VPS35-207ENST00000568191 BACH2Q9BYV9 841 aa4.96□□□□□ -1.62
VPS35-207ENST00000568191 RNF32Q9H0A6 362 aa4.96□□□□□ -1.62
VPS35-207ENST00000568191 C19orf44Q9H6X5 657 aa4.96□□□□□ -1.62
VPS35-207ENST00000568191 PCDHB12Q9Y5F1 795 aa4.96□□□□□ -1.62
VPS35-207ENST00000568191 SHISA3A0PJX4 238 aa4.95□□□□□ -1.62
VPS35-207ENST00000568191 SIGLEC6O43699 453 aa4.95□□□□□ -1.62
VPS35-207ENST00000568191 SYPP08247 313 aa4.95□□□□□ -1.62
VPS35-207ENST00000568191 TRHRP34981 398 aaPredicted RBP4.95□□□□□ -1.62
VPS35-207ENST00000568191 KIR2DL1P43626 348 aaPredicted RBP4.95□□□□□ -1.62
VPS35-207ENST00000568191 KIR2DL2P43627 348 aaPredicted RBP4.95□□□□□ -1.62
VPS35-207ENST00000568191 FBXW10Q5XX13 1052 aa4.95□□□□□ -1.62
VPS35-207ENST00000568191 OLFML2BQ68BL8 750 aa4.95□□□□□ -1.62
VPS35-207ENST00000568191 CIAPIN1Q6FI81 312 aa4.95□□□□□ -1.62
VPS35-207ENST00000568191 USHBP1Q8N6Y0 703 aa4.95□□□□□ -1.62
VPS35-207ENST00000568191 CRBNQ96SW2 442 aa4.95□□□□□ -1.62
VPS35-207ENST00000568191 HDAC8Q9BY41 377 aa4.95□□□□□ -1.62
VPS35-207ENST00000568191 FOXP3Q9BZS1 431 aa4.95□□□□□ -1.62
VPS35-207ENST00000568191 CHST7Q9NS84 486 aa4.95□□□□□ -1.62
VPS35-207ENST00000568191 PRR13Q9NZ81 148 aa4.95□□□□□ -1.62
VPS35-207ENST00000568191 YBX2Q9Y2T7 364 aaKnown RBP4.95□□□□□ -1.62
VPS35-207ENST00000568191 MEIS3P2A8K0S8 358 aa4.94□□□□□ -1.62
VPS35-207ENST00000568191 TNFRSF10CO14798 259 aa4.94□□□□□ -1.62
VPS35-207ENST00000568191 PEX10O60683 326 aa4.94□□□□□ -1.62
VPS35-207ENST00000568191 POLR2BP30876 1174 aaKnown RBP4.94□□□□□ -1.62
VPS35-207ENST00000568191 ARL4AP40617 200 aa4.94□□□□□ -1.62
VPS35-207ENST00000568191 COL9A2Q14055 689 aaPredicted RBP4.94□□□□□ -1.62
VPS35-207ENST00000568191 BBS9Q3SYG4 887 aa4.94□□□□□ -1.62
VPS35-207ENST00000568191 CWF19L1Q69YN2 538 aaKnown RBP4.94□□□□□ -1.62
VPS35-207ENST00000568191 CCDC144CPQ8IYA2 1237 aa4.94□□□□□ -1.62
VPS35-207ENST00000568191 LRRC56Q8IYG6 542 aaPredicted RBP4.94□□□□□ -1.62
VPS35-207ENST00000568191 RGS22Q8NE09 1264 aa4.94□□□□□ -1.62
VPS35-207ENST00000568191 LINC01599Q8WXQ3 324 aa4.94□□□□□ -1.62
VPS35-207ENST00000568191 SMARCC1Q92922 1105 aaPredicted RBP4.94□□□□□ -1.62
VPS35-207ENST00000568191 INTS4Q96HW7 963 aaKnown RBP4.94□□□□□ -1.62
VPS35-207ENST00000568191 EAF1Q96JC9 268 aaPredicted RBP4.94□□□□□ -1.62
VPS35-207ENST00000568191 SLC6A18Q96N87 628 aa4.94□□□□□ -1.62
VPS35-207ENST00000568191 TM9SF2Q99805 663 aa4.94□□□□□ -1.62
VPS35-207ENST00000568191 DSCC1Q9BVC3 393 aa4.94□□□□□ -1.62
VPS35-207ENST00000568191 PRDM14Q9GZV8 571 aa4.94□□□□□ -1.62
VPS35-207ENST00000568191 TNFRSF10DQ9UBN6 386 aa4.94□□□□□ -1.62
VPS35-207ENST00000568191 OR14I1A6ND48 311 aa4.93□□□□□ -1.62
VPS35-207ENST00000568191 WTIPA6NIX2 430 aaPredicted RBP4.93□□□□□ -1.62
VPS35-207ENST00000568191 SCAMP3O14828 347 aaKnown RBP4.93□□□□□ -1.62
VPS35-207ENST00000568191 FKTNO75072 461 aa4.93□□□□□ -1.62
VPS35-207ENST00000568191 SEMA7AO75326 666 aa4.93□□□□□ -1.62
VPS35-207ENST00000568191 PRAMEF1O95521 474 aa4.93□□□□□ -1.62
VPS35-207ENST00000568191 C1QTNF9P0C862 333 aa4.93□□□□□ -1.62
VPS35-207ENST00000568191 GLDCP23378 1020 aa4.93□□□□□ -1.62
VPS35-207ENST00000568191 TMEM62Q0P6H9 643 aa4.93□□□□□ -1.62
VPS35-207ENST00000568191 AUHQ13825 339 aaKnown RBP4.93□□□□□ -1.62
VPS35-207ENST00000568191 NOL9Q5SY16 702 aaKnown RBP4.93□□□□□ -1.62
VPS35-207ENST00000568191 GALNT18Q6P9A2 607 aa4.93□□□□□ -1.62
VPS35-207ENST00000568191 ATG14Q6ZNE5 492 aa4.93□□□□□ -1.62
VPS35-207ENST00000568191 CEP128Q6ZU80 1094 aa4.93□□□□□ -1.62
VPS35-207ENST00000568191 TMC3Q7Z5M5 1100 aa4.93□□□□□ -1.62
VPS35-207ENST00000568191 SIAH1Q8IUQ4 282 aa4.93□□□□□ -1.62
VPS35-207ENST00000568191 ZNF654Q8IZM8 581 aa4.93□□□□□ -1.62
VPS35-207ENST00000568191 MAP6Q96JE9 813 aa4.93□□□□□ -1.62
VPS35-207ENST00000568191 CRTAC1Q9NQ79 661 aa4.93□□□□□ -1.62
VPS35-207ENST00000568191 ZNRF3Q9ULT6 936 aa4.93□□□□□ -1.62
VPS35-207ENST00000568191 A0A1W2PQ27 194 aa4.92□□□□□ -1.62
VPS35-207ENST00000568191 A0A1W2PQ64 194 aa4.92□□□□□ -1.62
VPS35-207ENST00000568191 A0A1W2PQC6 194 aa4.92□□□□□ -1.62
VPS35-207ENST00000568191 A0A1W2PQD8 194 aa4.92□□□□□ -1.62
VPS35-207ENST00000568191 ABLIM1O14639 778 aa4.92□□□□□ -1.62
VPS35-207ENST00000568191 GSNP06396 782 aa4.92□□□□□ -1.62
VPS35-207ENST00000568191 MED14OSP0DP75 135 aa4.92□□□□□ -1.62
VPS35-207ENST00000568191 NOP2P46087 812 aaKnown RBP4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms