RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 MYL10Q9BUA6 226 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 ZMYND12Q9H0C1 365 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 TAOK3Q9H2K8 898 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 ARHGEF10LQ9HCE6 1279 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 CDK5RAP2Q96SN8 1893 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 CYP2D7A0A087X1C5 515 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 WTIPA6NIX2 430 aaPredicted RBP8.58□□□□□ -1.04
VPS39-204ENST00000561818 BTBD18B2RXH4 712 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 TBC1D12O60347 775 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 NEMFO60524 1076 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 ZNF202O95125 648 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 LIG1P18858 919 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 ZNF165P49910 485 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 FXR2P51116 673 aaKnown RBP eCLIP8.58□□□□□ -1.04
VPS39-204ENST00000561818 MRPL12P52815 198 aaKnown RBP8.58□□□□□ -1.04
VPS39-204ENST00000561818 PICALMQ13492 652 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 PTPAQ15257 358 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 PKN1Q16512 942 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 AOC3Q16853 763 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 DOK7Q18PE1 504 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 CERKLQ49MI3 558 aaPredicted RBP8.58□□□□□ -1.04
VPS39-204ENST00000561818 TTC38Q5R3I4 469 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 TATDN1Q6P1N9 297 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 ILDR1Q86SU0 546 aaPredicted RBP8.58□□□□□ -1.04
VPS39-204ENST00000561818 GAS2L3Q86XJ1 694 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 ZSCAN29Q8IWY8 852 aaPredicted RBP8.58□□□□□ -1.04
VPS39-204ENST00000561818 CERS5Q8N5B7 392 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 SRBD1Q8N5C6 995 aaKnown RBP8.58□□□□□ -1.04
VPS39-204ENST00000561818 CNNM3Q8NE01 707 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 FAM151AQ8WW52 585 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 CCDC47Q96A33 483 aaKnown RBP8.58□□□□□ -1.04
VPS39-204ENST00000561818 CEP95Q96GE4 821 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 GMCL1Q96IK5 515 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 LRRC27Q9C0I9 530 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 MAF1Q9H063 256 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 RIOX1Q9H6W3 641 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 DBNDD1Q9H9R9 158 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 IL17RBQ9NRM6 502 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 RMND1Q9NWS8 449 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 KIAA1468Q9P260 1216 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 SAP30BPQ9UHR5 308 aaKnown RBP8.58□□□□□ -1.04
VPS39-204ENST00000561818 MAD2L2Q9UI95 211 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 KCNH3Q9ULD8 1083 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 JAG2Q9Y219 1238 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 HPSEQ9Y251 543 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 ECM29Q5VYK3 1845 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 MYH8P13535 1937 aa8.58□□□□□ -1.04
VPS39-204ENST00000561818 SLX4Q8IY92 1834 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 PNMA6FA0A0J9YX94 578 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 IKBKBO14920 756 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 PTMAP06454 111 aaKnown RBP8.57□□□□□ -1.04
VPS39-204ENST00000561818 CYP2D6P10635 497 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 PDHBP11177 359 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 PFKFB1P16118 471 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 CDC25BP30305 580 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 NAPAP54920 295 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 ATP2C1P98194 919 aaPredicted RBP8.57□□□□□ -1.04
VPS39-204ENST00000561818 CEBPZQ03701 1054 aaKnown RBP8.57□□□□□ -1.04
VPS39-204ENST00000561818 AP3B2Q13367 1082 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 SNW1Q13573 536 aaKnown RBP8.57□□□□□ -1.04
VPS39-204ENST00000561818 NONOQ15233 471 aaKnown RBP eCLIP8.57□□□□□ -1.04
VPS39-204ENST00000561818 RBM26Q5T8P6 1007 aaKnown RBP8.57□□□□□ -1.04
VPS39-204ENST00000561818 FAM173BQ6P4H8 233 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 SARM1Q6SZW1 724 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 OLFM4Q6UX06 510 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 KIAA0825Q8IV33 1275 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 REXO1Q8N1G1 1221 aaKnown RBP8.57□□□□□ -1.04
VPS39-204ENST00000561818 SAMD3Q8N6K7 520 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 IQUBQ8NA54 791 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 RBSNQ9H1K0 784 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 EHMT1Q9H9B1 1298 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 SENP2Q9HC62 589 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 GOPCQ9HD26 462 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 VPS54Q9P1Q0 977 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 RABGAP1Q9Y3P9 1069 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 CLIC4Q9Y696 253 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 TACC3Q9Y6A5 838 aa8.57□□□□□ -1.04
VPS39-204ENST00000561818 KIF28PB7ZC32 967 aa8.56□□□□□ -1.04
VPS39-204ENST00000561818 CBFA2T2O43439 604 aa8.56□□□□□ -1.04
VPS39-204ENST00000561818 C21orf2O43822 256 aa8.56□□□□□ -1.04
VPS39-204ENST00000561818 PLA2G6O60733 806 aa8.56□□□□□ -1.04
VPS39-204ENST00000561818 PLEKHA8P1O95397 391 aa8.56□□□□□ -1.04
VPS39-204ENST00000561818 FOSP01100 380 aaPredicted RBP8.56□□□□□ -1.04
VPS39-204ENST00000561818 FDX1P10109 184 aa8.56□□□□□ -1.04
VPS39-204ENST00000561818 ZNF543Q08ER8 600 aa8.56□□□□□ -1.04
VPS39-204ENST00000561818 TMEM266Q2M3C6 531 aa8.56□□□□□ -1.04
VPS39-204ENST00000561818 CFAP100Q494V2 611 aa8.56□□□□□ -1.04
VPS39-204ENST00000561818 AXDND1Q5T1B0 1012 aaPredicted RBP8.56□□□□□ -1.04
VPS39-204ENST00000561818 MOXD1Q6UVY6 613 aa8.56□□□□□ -1.04
VPS39-204ENST00000561818 HEATR3Q7Z4Q2 680 aa8.56□□□□□ -1.04
VPS39-204ENST00000561818 ZSCAN30Q86W11 494 aa8.56□□□□□ -1.04
VPS39-204ENST00000561818 MLKLQ8NB16 471 aa8.56□□□□□ -1.04
VPS39-204ENST00000561818 DPF2Q92785 391 aa8.56□□□□□ -1.04
VPS39-204ENST00000561818 DYNLL2Q96FJ2 89 aa8.56□□□□□ -1.04
VPS39-204ENST00000561818 GPR101Q96P66 508 aaPredicted RBP8.56□□□□□ -1.04
VPS39-204ENST00000561818 GSDMAQ96QA5 445 aa8.56□□□□□ -1.04
VPS39-204ENST00000561818 INCENPQ9NQS7 918 aa8.56□□□□□ -1.04
VPS39-204ENST00000561818 PPP2R3BQ9Y5P8 575 aa8.56□□□□□ -1.04
VPS39-204ENST00000561818 GREB1LQ9C091 1923 aaPredicted RBP8.55□□□□□ -1.04
VPS39-204ENST00000561818 F8W031 263 aaPredicted RBP8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms