RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 EIF2AK2P19525 551 aaKnown RBP6.21□□□□□ -1.41
VPS13C-209ENST00000560637 YY1P25490 414 aa6.21□□□□□ -1.41
VPS13C-209ENST00000560637 TPM4P67936 248 aa6.21□□□□□ -1.41
VPS13C-209ENST00000560637 REXO1Q8N1G1 1221 aaKnown RBP6.21□□□□□ -1.41
VPS13C-209ENST00000560637 CHURC1Q8WUH1 139 aa6.21□□□□□ -1.41
VPS13C-209ENST00000560637 SCAND2PQ9GZW5 306 aaPredicted RBP6.21□□□□□ -1.41
VPS13C-209ENST00000560637 PSTPIP2Q9H939 334 aa6.21□□□□□ -1.41
VPS13C-209ENST00000560637 HOOK1Q9UJC3 728 aaKnown RBP6.21□□□□□ -1.41
VPS13C-209ENST00000560637 MAPK8IP1Q9UQF2 711 aa6.21□□□□□ -1.41
VPS13C-209ENST00000560637 IL1R1P14778 569 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 YBX3P16989 372 aaKnown RBP eCLIP6.21□□□□□ -1.42
VPS13C-209ENST00000560637 GUCY1A2P33402 732 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 ADCY7P51828 1080 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 CYP4A11Q02928 519 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 PRR16Q569H4 304 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 TMEM179Q6ZVK1 233 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.21□□□□□ -1.42
VPS13C-209ENST00000560637 SNX21Q969T3 373 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 EEF2KMTQ96G04 330 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 TM6SF1Q9BZW5 370 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 RBM28Q9NW13 759 aaKnown RBP6.21□□□□□ -1.42
VPS13C-209ENST00000560637 DACT1Q9NYF0 836 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 MKRN1Q9UHC7 482 aaKnown RBP6.21□□□□□ -1.42
VPS13C-209ENST00000560637 UTRNP46939 3433 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 SPTLC2O15270 562 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 IGSF3O75054 1194 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 SMC2O95347 1197 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 SCG2P13521 617 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 RASA1P20936 1047 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 STAT2P52630 851 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 ENOX2Q16206 610 aaKnown RBP6.21□□□□□ -1.42
VPS13C-209ENST00000560637 NCAPH2Q6IBW4 605 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 HHIPL2Q6UWX4 724 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 DPP9Q86TI2 863 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 APOBEC3FQ8IUX4 373 aaKnown RBP6.21□□□□□ -1.42
VPS13C-209ENST00000560637 AGBL3Q8NEM8 1001 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 MMRN2Q9H8L6 949 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 SWAP70Q9UH65 585 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 SERPINA10Q9UK55 444 aa6.21□□□□□ -1.42
VPS13C-209ENST00000560637 AK9Q5TCS8 1911 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 POTEIP0CG38 1075 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 POTEJP0CG39 1038 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 CDC37Q16543 378 aaPredicted RBP6.2□□□□□ -1.42
VPS13C-209ENST00000560637 SKOR2Q2VWA4 1001 aaPredicted RBP6.2□□□□□ -1.42
VPS13C-209ENST00000560637 MB21D2Q8IYB1 491 aaPredicted RBP6.2□□□□□ -1.42
VPS13C-209ENST00000560637 NSUN7Q8NE18 718 aaKnown RBP6.2□□□□□ -1.42
VPS13C-209ENST00000560637 STAG1Q8WVM7 1258 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 FAM151AQ8WW52 585 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 CIZ1Q9ULV3 898 aaPredicted RBP6.2□□□□□ -1.42
VPS13C-209ENST00000560637 CEP131Q9UPN4 1083 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 NUP188Q5SRE5 1749 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 PEX10O60683 326 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 GADD45BO75293 160 aaPredicted RBP6.2□□□□□ -1.42
VPS13C-209ENST00000560637 NDUFB10O96000 172 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 ANTXR2P58335 489 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 Q3C1V9 767 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 SEPT14Q6ZU15 432 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 GPIHBP1Q8IV16 184 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 CLIC6Q96NY7 704 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 ADARB2Q9NS39 739 aaKnown RBP6.2□□□□□ -1.42
VPS13C-209ENST00000560637 GOLGA6L6A8MZA4 724 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 PFKFB2O60825 505 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 MBD3O95983 291 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 HARSP12081 509 aaKnown RBP6.2□□□□□ -1.42
VPS13C-209ENST00000560637 GSE1Q14687 1217 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 ZDHHC15Q96MV8 337 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 USP28Q96RU2 1077 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 TRIM5Q9C035 493 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 RPAP3Q9H6T3 665 aaPredicted RBP6.2□□□□□ -1.42
VPS13C-209ENST00000560637 LY9Q9HBG7 655 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 R3HCC1Q9Y3T6 440 aaKnown RBP6.2□□□□□ -1.42
VPS13C-209ENST00000560637 SALL3Q9BXA9 1300 aa6.2□□□□□ -1.42
VPS13C-209ENST00000560637 FMNL1O95466 1100 aaPredicted RBP6.19□□□□□ -1.42
VPS13C-209ENST00000560637 ZMYM6O95789 1325 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 SYKP43405 635 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 STX17P56962 302 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 NONOQ15233 471 aaKnown RBP eCLIP6.19□□□□□ -1.42
VPS13C-209ENST00000560637 FAM47CQ5HY64 1035 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 PPP4R3BQ5MIZ7 849 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 ARHGEF16Q5VV41 709 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 ANO1Q5XXA6 986 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 SNRNP48Q6IEG0 339 aaKnown RBP6.19□□□□□ -1.42
VPS13C-209ENST00000560637 ZNF274Q96GC6 653 aaPredicted RBP6.19□□□□□ -1.42
VPS13C-209ENST00000560637 PPP1R16BQ96T49 567 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 PSMD1Q99460 953 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 SH2D3AQ9BRG2 576 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 TMEM260Q9NX78 707 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 GPRC5DQ9NZD1 345 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 TBC1D7Q9P0N9 293 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 ZHX1Q9UKY1 873 aaPredicted RBP6.19□□□□□ -1.42
VPS13C-209ENST00000560637 QSER1Q2KHR3 1735 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 LRRC37A3O60309 1634 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 PTMSP20962 102 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 TTC38Q5R3I4 469 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 SYDE2Q5VT97 1194 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 OXER1Q8TDS5 423 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 CLMNQ96JQ2 1002 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 AMNQ9BXJ7 453 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 RAB34Q9BZG1 259 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 ZMYND15Q9H091 742 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms