RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 KIF1BPQ96EK5 621 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 RHOVQ96L33 236 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 HS3ST6Q96QI5 342 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 PLA2G12BQ9BX93 195 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 CEP44Q9C0F1 390 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 NYXQ9GZU5 481 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 PDZRN3Q9UPQ7 1066 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 ZBTB1Q9Y2K1 713 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 PARP3Q9Y6F1 533 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 KDM3BQ7LBC6 1761 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 SCN11AQ9UI33 1791 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 FAM221BA6H8Z2 402 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 MINDY4BA8MYZ0 360 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 PDPK1O15530 556 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 ST18O60284 1047 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 GREM1O60565 184 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 SURF6O75683 361 aaKnown RBP6.19□□□□□ -1.42
LDLR-209ENST00000558528 VIL1P09327 827 aaKnown RBP6.19□□□□□ -1.42
LDLR-209ENST00000558528 HSPA8P11142 646 aaKnown RBP6.19□□□□□ -1.42
LDLR-209ENST00000558528 EDN3P14138 238 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 RFC4P35249 363 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 PTGIRP43119 386 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 VEGFBP49765 207 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 GYS2P54840 703 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 CBLBQ13191 982 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 OS9Q13438 667 aaPredicted RBP6.19□□□□□ -1.42
LDLR-209ENST00000558528 ITPK1Q13572 414 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 GRIN2CQ14957 1233 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 DDR2Q16832 855 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 CWF19L2Q2TBE0 894 aaKnown RBP6.19□□□□□ -1.42
LDLR-209ENST00000558528 SNAP47Q5SQN1 464 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 MSL1Q68DK7 614 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 COL23A1Q86Y22 540 aaPredicted RBP6.19□□□□□ -1.42
LDLR-209ENST00000558528 C3orf58Q8NDZ4 430 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 AIDAQ96BJ3 306 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 SUSD3Q96L08 255 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 UTP14AQ9BVJ6 771 aaKnown RBP6.19□□□□□ -1.42
LDLR-209ENST00000558528 LRRCC1Q9C099 1032 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 RRAGCQ9HB90 399 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 ABI2Q9NYB9 513 aaPredicted RBP6.19□□□□□ -1.42
LDLR-209ENST00000558528 NARFQ9UHQ1 456 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 PLAAQ9Y263 795 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 TLL2Q9Y6L7 1015 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 CDHR2Q9BYE9 1310 aa6.19□□□□□ -1.42
LDLR-209ENST00000558528 CNTNAP1P78357 1384 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 MEN1O00255 615 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 PDE8AO60658 829 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 INPP5BP32019 993 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 TXLNAP40222 546 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 LMNB2Q03252 620 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 TCEA2Q15560 299 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 CCDC57Q2TAC2 916 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 RABL6Q3YEC7 729 aaPredicted RBP6.18□□□□□ -1.42
LDLR-209ENST00000558528 C2orf27AQ580R0 203 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 ODR4Q5SWX8 454 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 TPTE2Q6XPS3 522 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 UBE3BQ7Z3V4 1068 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 SLITRK4Q8IW52 837 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 SIRT2Q8IXJ6 389 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 ZNF34Q8IZ26 560 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 CLASRPQ8N2M8 674 aaKnown RBP6.18□□□□□ -1.42
LDLR-209ENST00000558528 PHC3Q8NDX5 983 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 THAP3Q8WTV1 239 aaPredicted RBP6.18□□□□□ -1.42
LDLR-209ENST00000558528 STAG1Q8WVM7 1258 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 NKD1Q969G9 470 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 SHDQ96IW2 340 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 DNAJC7Q99615 494 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 EHD4Q9H223 541 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 TRMT112Q9UI30 125 aaKnown RBP6.18□□□□□ -1.42
LDLR-209ENST00000558528 KIAA1551Q9HCM1 1747 aa6.18□□□□□ -1.42
LDLR-209ENST00000558528 VIRMAQ69YN4 1812 aaKnown RBP6.18□□□□□ -1.42
LDLR-209ENST00000558528 ESYT3A0FGR9 886 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 SMAD7O15105 426 aaKnown RBP6.17□□□□□ -1.42
LDLR-209ENST00000558528 CAMTA2O94983 1202 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 EGFRP00533 1210 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 IMPDH2P12268 514 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 PIP4K2AP48426 406 aaPredicted RBP6.17□□□□□ -1.42
LDLR-209ENST00000558528 MASP1P48740 699 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 RGS3P49796 1198 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 LIG3P49916 1009 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 EIF6P56537 245 aaKnown RBP6.17□□□□□ -1.42
LDLR-209ENST00000558528 RPS26P62854 115 aaKnown RBP6.17□□□□□ -1.42
LDLR-209ENST00000558528 FBXL19Q6PCT2 694 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 CASC1Q6TDU7 716 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 Q6ZVU0 165 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 KRT26Q7Z3Y9 468 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 CCDC84Q86UT8 332 aaPredicted RBP6.17□□□□□ -1.42
LDLR-209ENST00000558528 FERMT3Q86UX7 667 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 NLRP10Q86W26 655 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 CMTR1Q8N1G2 835 aaKnown RBP6.17□□□□□ -1.42
LDLR-209ENST00000558528 LINC00116Q8NCU8 138 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 JDP2Q8WYK2 163 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 MARVELD3Q96A59 401 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 ZNF669Q96BR6 464 aaPredicted RBP6.17□□□□□ -1.42
LDLR-209ENST00000558528 SUCLG2Q96I99 432 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 LRRC3Q9BY71 257 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 CHRDQ9H2X0 955 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 UPF2Q9HAU5 1272 aaKnown RBP6.17□□□□□ -1.42
LDLR-209ENST00000558528 HOMER2Q9NSB8 354 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 ACTR10Q9NZ32 417 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms