RNA–Protein interactions for RNA: ENST00000556778.5

PRKCH-222, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-222	ENST00000556778	VCAM1	P19320	739 aa		10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	CTGF	P29279	349 aa		10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	IMMT	Q16891	758 aa	Known RBP	10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	OTUD7B	Q6GQQ9	843 aa		10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	USP17L2	Q6R6M4	530 aa		10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	ZNF687	Q8N1G0	1237 aa		10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	LRRC47	Q8N1G4	583 aa	Known RBP	10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	STAG1	Q8WVM7	1258 aa		10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	ARHGAP39	Q9C0H5	1083 aa		10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	ASCC2	Q9H1I8	757 aa	Predicted RBP	10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	ZFYVE28	Q9HCC9	887 aa		10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	ANO2	Q9NQ90	1003 aa		10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	TMOD4	Q9NZQ9	345 aa		10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	GTF3C3	Q9Y5Q9	886 aa		10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	RBM8A	Q9Y5S9	174 aa	Known RBP	10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	OTOF	Q9HC10	1997 aa		10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	ZMYM6	O95789	1325 aa		10.43	□□□□□ -0.74
PRKCH-222	ENST00000556778	TSPY2	A6NKD2	308 aa		10.43	□□□□□ -0.74
PRKCH-222	ENST00000556778	DPYSL4	O14531	572 aa		10.43	□□□□□ -0.74
PRKCH-222	ENST00000556778	EVI5	O60447	810 aa		10.43	□□□□□ -0.74
PRKCH-222	ENST00000556778	TLR2	O60603	784 aa		10.43	□□□□□ -0.74
PRKCH-222	ENST00000556778	KDM4A	O75164	1064 aa		10.43	□□□□□ -0.74
PRKCH-222	ENST00000556778	C17orf99	Q6UX52	265 aa		10.43	□□□□□ -0.74
PRKCH-222	ENST00000556778	KIAA1211	Q6ZU35	1233 aa		10.43	□□□□□ -0.74
PRKCH-222	ENST00000556778	CYB5R4	Q7L1T6	521 aa		10.43	□□□□□ -0.74
PRKCH-222	ENST00000556778	CHST3	Q7LGC8	479 aa		10.43	□□□□□ -0.74
PRKCH-222	ENST00000556778	PROCA1	Q8NCQ7	364 aa	Predicted RBP	10.43	□□□□□ -0.74
PRKCH-222	ENST00000556778	CFHR5	Q9BXR6	569 aa		10.43	□□□□□ -0.74
PRKCH-222	ENST00000556778	TBC1D2	Q9BYX2	928 aa		10.43	□□□□□ -0.74
PRKCH-222	ENST00000556778	RPAP3	Q9H6T3	665 aa	Predicted RBP	10.43	□□□□□ -0.74
PRKCH-222	ENST00000556778	TXNRD2	Q9NNW7	524 aa		10.43	□□□□□ -0.74
PRKCH-222	ENST00000556778	ZSWIM5	Q9P217	1185 aa		10.43	□□□□□ -0.74
PRKCH-222	ENST00000556778	CTNNA3	Q9UI47	895 aa		10.43	□□□□□ -0.74
PRKCH-222	ENST00000556778	ADGRA2	Q96PE1	1338 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778		E7EWF7	191 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778		F5H6K3	240 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	SLC27A2	O14975	620 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	HOXA7	P31268	230 aa	Predicted RBP	10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	KLRC3	Q07444	240 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	NECTIN1	Q15223	517 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	E2F4	Q16254	413 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778		Q3C1V9	767 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	RCSD1	Q6JBY9	416 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	CATSPERG	Q6ZRH7	1159 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	ANKRD13C	Q8N6S4	541 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	CD99L2	Q8TCZ2	262 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	MKL1	Q969V6	931 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	C12orf42	Q96LP6	360 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	VCPKMT	Q9H867	229 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	ZNF287	Q9HBT7	754 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	SENP2	Q9HC62	589 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	ARHGEF10L	Q9HCE6	1279 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	FBXO28	Q9NVF7	368 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	NYAP2	Q9P242	653 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	RBPJL	Q9UBG7	517 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	STX8	Q9UNK0	236 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	MTMR7	Q9Y216	660 aa		10.42	□□□□□ -0.74
PRKCH-222	ENST00000556778	CDK5RAP2	Q96SN8	1893 aa		10.41	□□□□□ -0.74
PRKCH-222	ENST00000556778	FKTN	O75072	461 aa		10.41	□□□□□ -0.74
PRKCH-222	ENST00000556778	TTLL1	O95922	423 aa		10.41	□□□□□ -0.74
PRKCH-222	ENST00000556778	NDUFB10	O96000	172 aa		10.41	□□□□□ -0.74
PRKCH-222	ENST00000556778	USP14	P54578	494 aa		10.41	□□□□□ -0.74
PRKCH-222	ENST00000556778	SP3	Q02447	781 aa		10.41	□□□□□ -0.74
PRKCH-222	ENST00000556778	FAM83B	Q5T0W9	1011 aa		10.41	□□□□□ -0.74
PRKCH-222	ENST00000556778	CREB3L3	Q68CJ9	461 aa		10.41	□□□□□ -0.74
PRKCH-222	ENST00000556778	PARK7	Q99497	189 aa	Known RBP	10.41	□□□□□ -0.74
PRKCH-222	ENST00000556778	TMEM47	Q9BQJ4	181 aa		10.41	□□□□□ -0.74
PRKCH-222	ENST00000556778	PRDM10	Q9NQV6	1147 aa		10.41	□□□□□ -0.74
PRKCH-222	ENST00000556778	WDR70	Q9NW82	654 aa		10.41	□□□□□ -0.74
PRKCH-222	ENST00000556778	SLC45A1	Q9Y2W3	748 aa		10.41	□□□□□ -0.74
PRKCH-222	ENST00000556778	FOCAD	Q5VW36	1801 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	USP17L15	C9J2P7	530 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	USP17L13	C9JLJ4	530 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	USP17L11	C9JVI0	530 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	USP17L18	D6R9N7	530 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	USP17L22	D6RA61	530 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	USP17L17	D6RBQ6	530 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	USP17L19	D6RCP7	530 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	USP17L20	D6RJB6	530 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	CNMD	O75829	334 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	BCR	P11274	1271 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	OSBP	P22059	807 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	MCC	P23508	829 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	NOV	P48745	357 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	ANTXR2	P58335	489 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	HERVK_113	P62684	666 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	USP17L24	Q0WX57	530 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	CASC1	Q6TDU7	716 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	SMCR8	Q8TEV9	937 aa	Predicted RBP	10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	ESR2	Q92731	530 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	TANGO6	Q9C0B7	1094 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	RNF41	Q9H4P4	317 aa	Predicted RBP	10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	ZCCHC17	Q9NP64	241 aa	Known RBP	10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	BTBD7	Q9P203	1132 aa		10.4	□□□□□ -0.74
PRKCH-222	ENST00000556778	NAV1	Q8NEY1	1877 aa		10.4	□□□□□ -0.75
PRKCH-222	ENST00000556778	CPA1	P15085	419 aa		10.39	□□□□□ -0.75
PRKCH-222	ENST00000556778	SNAP25	P60880	206 aa		10.39	□□□□□ -0.75
PRKCH-222	ENST00000556778	IRX3	P78415	501 aa	Predicted RBP	10.39	□□□□□ -0.75
PRKCH-222	ENST00000556778	ADCK5	Q3MIX3	580 aa		10.39	□□□□□ -0.75
PRKCH-222	ENST00000556778	SLFN13	Q68D06	897 aa		10.39	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms