RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	CLTB	P09497	229 aa		15.28	■□□□□ 0.04
SHMT2-223	ENST00000556689	AKR1B1	P15121	316 aa		15.28	■□□□□ 0.04
SHMT2-223	ENST00000556689	FOSL2	P15408	326 aa		15.28	■□□□□ 0.04
SHMT2-223	ENST00000556689	CLASRP	Q8N2M8	674 aa	Known RBP	15.28	■□□□□ 0.04
SHMT2-223	ENST00000556689	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	15.28	■□□□□ 0.04
SHMT2-223	ENST00000556689	RNPC3	Q96LT9	517 aa	Known RBP	15.28	■□□□□ 0.04
SHMT2-223	ENST00000556689	DNAJC2	Q99543	621 aa	Known RBP	15.28	■□□□□ 0.04
SHMT2-223	ENST00000556689	TINF2	Q9BSI4	451 aa		15.28	■□□□□ 0.04
SHMT2-223	ENST00000556689	FRMPD3	Q5JV73	1810 aa		15.28	■□□□□ 0.04
SHMT2-223	ENST00000556689	TMEM265	A0A087WTH1	108 aa		15.27	■□□□□ 0.04
SHMT2-223	ENST00000556689	KIAA0355	O15063	1070 aa		15.27	■□□□□ 0.04
SHMT2-223	ENST00000556689	PGK2	P07205	417 aa		15.27	■□□□□ 0.04
SHMT2-223	ENST00000556689	RAG1	P15918	1043 aa		15.27	■□□□□ 0.04
SHMT2-223	ENST00000556689	ITGB8	P26012	769 aa		15.27	■□□□□ 0.04
SHMT2-223	ENST00000556689	KCTD2	Q14681	263 aa		15.27	■□□□□ 0.04
SHMT2-223	ENST00000556689	ZNF792	Q3KQV3	632 aa		15.27	■□□□□ 0.04
SHMT2-223	ENST00000556689	RIOX2	Q8IUF8	465 aa		15.27	■□□□□ 0.04
SHMT2-223	ENST00000556689	CLEC10A	Q8IUN9	316 aa		15.27	■□□□□ 0.04
SHMT2-223	ENST00000556689	ARMT1	Q9H993	441 aa		15.27	■□□□□ 0.04
SHMT2-223	ENST00000556689	TMEM39A	Q9NV64	488 aa		15.27	■□□□□ 0.04
SHMT2-223	ENST00000556689		A0A1W2PQ45	241 aa	Predicted RBP	15.26	■□□□□ 0.03
SHMT2-223	ENST00000556689		A0A1W2PQY0	241 aa		15.26	■□□□□ 0.03
SHMT2-223	ENST00000556689	PRKAB2	O43741	272 aa		15.26	■□□□□ 0.03
SHMT2-223	ENST00000556689	PQBP1	O60828	265 aa	Known RBP	15.26	■□□□□ 0.03
SHMT2-223	ENST00000556689	IFIT2	P09913	472 aa	Known RBP	15.26	■□□□□ 0.03
SHMT2-223	ENST00000556689	EEF2	P13639	858 aa	Known RBP	15.26	■□□□□ 0.03
SHMT2-223	ENST00000556689	TAL1	P17542	331 aa	Predicted RBP	15.26	■□□□□ 0.03
SHMT2-223	ENST00000556689	STAT3	P40763	770 aa		15.26	■□□□□ 0.03
SHMT2-223	ENST00000556689	CDK8	P49336	464 aa		15.26	■□□□□ 0.03
SHMT2-223	ENST00000556689	EPHB4	P54760	987 aa		15.26	■□□□□ 0.03
SHMT2-223	ENST00000556689	C12orf60	Q5U649	245 aa		15.26	■□□□□ 0.03
SHMT2-223	ENST00000556689	AMOTL1	Q8IY63	956 aa		15.26	■□□□□ 0.03
SHMT2-223	ENST00000556689	SYMPK	Q92797	1274 aa	Known RBP	15.26	■□□□□ 0.03
SHMT2-223	ENST00000556689	KIF1BP	Q96EK5	621 aa		15.26	■□□□□ 0.03
SHMT2-223	ENST00000556689	TSEN34	Q9BSV6	310 aa	Known RBP	15.26	■□□□□ 0.03
SHMT2-223	ENST00000556689	KANSL2	Q9H9L4	492 aa		15.26	■□□□□ 0.03
SHMT2-223	ENST00000556689	FBXO28	Q9NVF7	368 aa		15.26	■□□□□ 0.03
SHMT2-223	ENST00000556689	RLF	Q13129	1914 aa		15.25	■□□□□ 0.03
SHMT2-223	ENST00000556689	ZNF236	Q9UL36	1845 aa		15.25	■□□□□ 0.03
SHMT2-223	ENST00000556689	USP17L12	C9JPN9	530 aa		15.25	■□□□□ 0.03
SHMT2-223	ENST00000556689	USP17L21	D6R901	530 aa		15.25	■□□□□ 0.03
SHMT2-223	ENST00000556689	VWA5A	O00534	786 aa		15.25	■□□□□ 0.03
SHMT2-223	ENST00000556689	ZNF865	P0CJ78	1059 aa	Predicted RBP	15.25	■□□□□ 0.03
SHMT2-223	ENST00000556689	AKR1A1	P14550	325 aa		15.25	■□□□□ 0.03
SHMT2-223	ENST00000556689	COPB2	P35606	906 aa		15.25	■□□□□ 0.03
SHMT2-223	ENST00000556689	FPGS	Q05932	587 aa		15.25	■□□□□ 0.03
SHMT2-223	ENST00000556689	NUP133	Q8WUM0	1156 aa		15.25	■□□□□ 0.03
SHMT2-223	ENST00000556689	DDRGK1	Q96HY6	314 aa		15.25	■□□□□ 0.03
SHMT2-223	ENST00000556689	TOX2	Q96NM4	488 aa		15.25	■□□□□ 0.03
SHMT2-223	ENST00000556689	GOPC	Q9HD26	462 aa		15.25	■□□□□ 0.03
SHMT2-223	ENST00000556689	CNPY2	Q9Y2B0	182 aa		15.25	■□□□□ 0.03
SHMT2-223	ENST00000556689	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	15.24	■□□□□ 0.03
SHMT2-223	ENST00000556689	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	15.24	■□□□□ 0.03
SHMT2-223	ENST00000556689	DCDC2C	A8MYV0	355 aa		15.24	■□□□□ 0.03
SHMT2-223	ENST00000556689	APBB1	O00213	710 aa		15.24	■□□□□ 0.03
SHMT2-223	ENST00000556689	MBD4	O95243	580 aa		15.24	■□□□□ 0.03
SHMT2-223	ENST00000556689	ADD2	P35612	726 aa		15.24	■□□□□ 0.03
SHMT2-223	ENST00000556689	FAAP100	Q0VG06	881 aa		15.24	■□□□□ 0.03
SHMT2-223	ENST00000556689	C16orf86	Q6ZW13	317 aa		15.24	■□□□□ 0.03
SHMT2-223	ENST00000556689	ANKRD33	Q7Z3H0	272 aa		15.24	■□□□□ 0.03
SHMT2-223	ENST00000556689	BCL11A	Q9H165	835 aa		15.24	■□□□□ 0.03
SHMT2-223	ENST00000556689	PRDM6	Q9NQX0	595 aa		15.24	■□□□□ 0.03
SHMT2-223	ENST00000556689	PPP1R9A	Q9ULJ8	1098 aa		15.24	■□□□□ 0.03
SHMT2-223	ENST00000556689	LTBP2	Q14767	1821 aa		15.24	■□□□□ 0.03
SHMT2-223	ENST00000556689	CYP2D7	A0A087X1C5	515 aa		15.23	■□□□□ 0.03
SHMT2-223	ENST00000556689	SMIM22	K7EJ46	135 aa		15.23	■□□□□ 0.03
SHMT2-223	ENST00000556689	RAD21	O60216	631 aa		15.23	■□□□□ 0.03
SHMT2-223	ENST00000556689	ADAMTS4	O75173	837 aa		15.23	■□□□□ 0.03
SHMT2-223	ENST00000556689	ACLY	P53396	1101 aa		15.23	■□□□□ 0.03
SHMT2-223	ENST00000556689	SLFNL1	Q499Z3	407 aa		15.23	■□□□□ 0.03
SHMT2-223	ENST00000556689	MSL3	Q8N5Y2	521 aa	Known RBP	15.23	■□□□□ 0.03
SHMT2-223	ENST00000556689	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	15.23	■□□□□ 0.03	1e-6	■■□□□ 11.9
SHMT2-223	ENST00000556689	BOLA2	Q9H3K6	86 aa		15.23	■□□□□ 0.03
SHMT2-223	ENST00000556689	STARD7	Q9NQZ5	370 aa		15.23	■□□□□ 0.03
SHMT2-223	ENST00000556689	PAG1	Q9NWQ8	432 aa		15.23	■□□□□ 0.03
SHMT2-223	ENST00000556689	ZNF214	Q9UL59	606 aa	Predicted RBP	15.23	■□□□□ 0.03
SHMT2-223	ENST00000556689	FAM184B	Q9ULE4	1060 aa		15.23	■□□□□ 0.03
SHMT2-223	ENST00000556689	CDH23	Q9H251	3354 aa		15.23	■□□□□ 0.03
SHMT2-223	ENST00000556689	MOXD2P	A6NHM9	499 aa		15.22	■□□□□ 0.03
SHMT2-223	ENST00000556689	TIMP1	P01033	207 aa		15.22	■□□□□ 0.03
SHMT2-223	ENST00000556689	GRIN2C	Q14957	1233 aa		15.22	■□□□□ 0.03
SHMT2-223	ENST00000556689	KCNA10	Q16322	511 aa		15.22	■□□□□ 0.03
SHMT2-223	ENST00000556689	FAM83B	Q5T0W9	1011 aa		15.22	■□□□□ 0.03
SHMT2-223	ENST00000556689	KLHDC9	Q8NEP7	349 aa		15.22	■□□□□ 0.03
SHMT2-223	ENST00000556689	REPS2	Q8NFH8	660 aa		15.22	■□□□□ 0.03
SHMT2-223	ENST00000556689	DDX11	Q96FC9	970 aa		15.22	■□□□□ 0.03
SHMT2-223	ENST00000556689	RAB11FIP3	O75154	756 aa		15.21	■□□□□ 0.03
SHMT2-223	ENST00000556689	ATP5J	P18859	108 aa		15.21	■□□□□ 0.03
SHMT2-223	ENST00000556689	DNAJB2	P25686	324 aa		15.21	■□□□□ 0.03
SHMT2-223	ENST00000556689	CTR9	Q6PD62	1173 aa		15.21	■□□□□ 0.03
SHMT2-223	ENST00000556689	RPAP2	Q8IXW5	612 aa	Predicted RBP	15.21	■□□□□ 0.03
SHMT2-223	ENST00000556689	PANK1	Q8TE04	598 aa		15.21	■□□□□ 0.03
SHMT2-223	ENST00000556689	LENG1	Q96BZ8	264 aa	Predicted RBP	15.21	■□□□□ 0.03
SHMT2-223	ENST00000556689	ZNF576	Q9H609	170 aa		15.21	■□□□□ 0.03
SHMT2-223	ENST00000556689	SLC4A4	Q9Y6R1	1079 aa		15.21	■□□□□ 0.03
SHMT2-223	ENST00000556689	SYNGAP1	Q96PV0	1343 aa		15.2	■□□□□ 0.02
SHMT2-223	ENST00000556689	DUSP11	O75319	330 aa	Known RBP	15.2	■□□□□ 0.02
SHMT2-223	ENST00000556689	HMMR	O75330	724 aa		15.2	■□□□□ 0.02
SHMT2-223	ENST00000556689	SNAI1	O95863	264 aa	Predicted RBP	15.2	■□□□□ 0.02
SHMT2-223	ENST00000556689	UBE3C	Q15386	1083 aa		15.2	■□□□□ 0.02

Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms