RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 PARP10Q53GL7 1025 aa10.72□□□□□ -0.69
SYNE2-213ENST00000554805 CDKAL1Q5VV42 579 aa10.72□□□□□ -0.69
SYNE2-213ENST00000554805 TMTC3Q6ZXV5 915 aa10.72□□□□□ -0.69
SYNE2-213ENST00000554805 SRBD1Q8N5C6 995 aaKnown RBP10.72□□□□□ -0.69
SYNE2-213ENST00000554805 CAGE1Q8TC20 777 aa10.72□□□□□ -0.69
SYNE2-213ENST00000554805 GPKOWQ92917 476 aaPredicted RBP eCLIP10.72□□□□□ -0.69
SYNE2-213ENST00000554805 ABCB6Q9NP58 842 aa10.72□□□□□ -0.69
SYNE2-213ENST00000554805 RMND1Q9NWS8 449 aa10.72□□□□□ -0.69
SYNE2-213ENST00000554805 XDHP47989 1333 aa10.72□□□□□ -0.69
SYNE2-213ENST00000554805 ABL1P00519 1130 aa10.71□□□□□ -0.69
SYNE2-213ENST00000554805 RPN1P04843 607 aaKnown RBP10.71□□□□□ -0.69
SYNE2-213ENST00000554805 SCG2P13521 617 aa10.71□□□□□ -0.69
SYNE2-213ENST00000554805 UBA7P41226 1012 aa10.71□□□□□ -0.69
SYNE2-213ENST00000554805 STIM1Q13586 685 aa10.71□□□□□ -0.69
SYNE2-213ENST00000554805 CT47A1Q5JQC4 288 aaPredicted RBP10.71□□□□□ -0.69
SYNE2-213ENST00000554805 RASGRP2Q7LDG7 609 aa10.71□□□□□ -0.69
SYNE2-213ENST00000554805 SUGCTQ9HAC7 445 aa10.71□□□□□ -0.69
SYNE2-213ENST00000554805 GLI3P10071 1580 aa10.71□□□□□ -0.69
SYNE2-213ENST00000554805 PKD1L3Q7Z443 1732 aa10.71□□□□□ -0.69
SYNE2-213ENST00000554805 CYP2D6P10635 497 aa10.71□□□□□ -0.69
SYNE2-213ENST00000554805 APTXQ7Z2E3 356 aaKnown RBP10.71□□□□□ -0.69
SYNE2-213ENST00000554805 SH3RF1Q7Z6J0 888 aa10.71□□□□□ -0.69
SYNE2-213ENST00000554805 CCDC148Q8NFR7 591 aa10.71□□□□□ -0.69
SYNE2-213ENST00000554805 CAPZA3Q96KX2 299 aa10.71□□□□□ -0.69
SYNE2-213ENST00000554805 ABHD10Q9NUJ1 306 aa10.71□□□□□ -0.69
SYNE2-213ENST00000554805 LUC7L2Q9Y383 392 aaKnown RBP10.71□□□□□ -0.69
SYNE2-213ENST00000554805 DCCP43146 1447 aa10.71□□□□□ -0.7
SYNE2-213ENST00000554805 TRIM49BA6NDI0 452 aa10.71□□□□□ -0.7
SYNE2-213ENST00000554805 ENC1O14682 589 aa10.71□□□□□ -0.7
SYNE2-213ENST00000554805 SEMA3EO15041 775 aa10.71□□□□□ -0.7
SYNE2-213ENST00000554805 ERVK-24P63145 666 aa10.71□□□□□ -0.7
SYNE2-213ENST00000554805 ATP2C1P98194 919 aaPredicted RBP10.71□□□□□ -0.7
SYNE2-213ENST00000554805 NCAPH2Q6IBW4 605 aa10.71□□□□□ -0.7
SYNE2-213ENST00000554805 LEKR1Q6ZMV7 388 aa10.71□□□□□ -0.7
SYNE2-213ENST00000554805 GOLGA6L1Q8N7Z2 621 aa10.71□□□□□ -0.7
SYNE2-213ENST00000554805 PNKPQ96T60 521 aa10.71□□□□□ -0.7
SYNE2-213ENST00000554805 CHP1Q99653 195 aa10.71□□□□□ -0.7
SYNE2-213ENST00000554805 CRNKL1Q9BZJ0 848 aaKnown RBP10.71□□□□□ -0.7
SYNE2-213ENST00000554805 GBP3Q9H0R5 595 aa10.71□□□□□ -0.7
SYNE2-213ENST00000554805 KAT14Q9H8E8 782 aa10.71□□□□□ -0.7
SYNE2-213ENST00000554805 TFCP2L1Q9NZI6 479 aa10.71□□□□□ -0.7
SYNE2-213ENST00000554805 RWDD2AQ9UIY3 292 aa10.71□□□□□ -0.7
SYNE2-213ENST00000554805 NUP188Q5SRE5 1749 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 EVX2Q03828 476 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 TROAPQ12815 778 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 TCP11X2Q5H9J9 407 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 PYM1Q9BRP8 204 aaKnown RBP10.7□□□□□ -0.7
SYNE2-213ENST00000554805 ZNHIT6Q9NWK9 470 aaKnown RBP10.7□□□□□ -0.7
SYNE2-213ENST00000554805 TRIM10Q9UDY6 481 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 ADAM21Q9UKJ8 722 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 EPN1Q9Y6I3 576 aaPredicted RBP10.7□□□□□ -0.7
SYNE2-213ENST00000554805 ZNF142P52746 1687 aaPredicted RBP10.7□□□□□ -0.7
SYNE2-213ENST00000554805 C4AP0C0L4 1744 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 C4BP0C0L5 1744 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 H3BQF6 201 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 RNF225M0QZC1 329 aaPredicted RBP10.7□□□□□ -0.7
SYNE2-213ENST00000554805 DDAH1O94760 285 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 PARP1P09874 1014 aaKnown RBP10.7□□□□□ -0.7
SYNE2-213ENST00000554805 VEGFAP15692 232 aaPredicted RBP10.7□□□□□ -0.7
SYNE2-213ENST00000554805 KIF5BP33176 963 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 PRCPP42785 496 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 ZSCAN26Q16670 478 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 SKIDA1Q1XH10 827 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 CCDC122Q5T0U0 273 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 CTR9Q6PD62 1173 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 MCM9Q9NXL9 1143 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 CWC15Q9P013 229 aaKnown RBP10.7□□□□□ -0.7
SYNE2-213ENST00000554805 MYO6Q9UM54 1294 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 KCNQ2O43526 872 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 DTHD1Q6ZMT9 781 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 ACBD3Q9H3P7 528 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 ANKZF1Q9H8Y5 726 aa10.7□□□□□ -0.7
SYNE2-213ENST00000554805 LIMA1Q9UHB6 759 aaKnown RBP10.7□□□□□ -0.7
SYNE2-213ENST00000554805 PP2D1A8MPX8 630 aa10.69□□□□□ -0.7
SYNE2-213ENST00000554805 CAPN2P17655 700 aa10.69□□□□□ -0.7
SYNE2-213ENST00000554805 VSNL1P62760 191 aa10.69□□□□□ -0.7
SYNE2-213ENST00000554805 FUT2Q10981 343 aa10.69□□□□□ -0.7
SYNE2-213ENST00000554805 TUBB2AQ13885 445 aa10.69□□□□□ -0.7
SYNE2-213ENST00000554805 TRIM14Q14142 442 aa10.69□□□□□ -0.7
SYNE2-213ENST00000554805 WHAMMP3Q1A5X7 153 aa10.69□□□□□ -0.7
SYNE2-213ENST00000554805 ZNF658Q5TYW1 1059 aaPredicted RBP10.69□□□□□ -0.7
SYNE2-213ENST00000554805 CCDC24Q8N4L8 307 aa10.69□□□□□ -0.7
SYNE2-213ENST00000554805 OR8K1Q8NGG5 319 aa10.69□□□□□ -0.7
SYNE2-213ENST00000554805 CCDC47Q96A33 483 aaKnown RBP10.69□□□□□ -0.7
SYNE2-213ENST00000554805 RIOK1Q9BRS2 568 aaKnown RBP10.69□□□□□ -0.7
SYNE2-213ENST00000554805 TUBB2BQ9BVA1 445 aa10.69□□□□□ -0.7
SYNE2-213ENST00000554805 TFR2Q9UP52 801 aa10.69□□□□□ -0.7
SYNE2-213ENST00000554805 STRCP1A6NGW2 1772 aa10.69□□□□□ -0.7
SYNE2-213ENST00000554805 TRIM21P19474 475 aaKnown RBP10.69□□□□□ -0.7
SYNE2-213ENST00000554805 CALML3P27482 149 aa10.69□□□□□ -0.7
SYNE2-213ENST00000554805 PBX1P40424 430 aa10.69□□□□□ -0.7
SYNE2-213ENST00000554805 HEATR3Q7Z4Q2 680 aa10.69□□□□□ -0.7
SYNE2-213ENST00000554805 GPIHBP1Q8IV16 184 aa10.69□□□□□ -0.7
SYNE2-213ENST00000554805 BLIDQ8IZY5 108 aa10.69□□□□□ -0.7
SYNE2-213ENST00000554805 MKNK2Q9HBH9 465 aa10.69□□□□□ -0.7
SYNE2-213ENST00000554805 ANAPC4Q9UJX5 808 aa10.69□□□□□ -0.7
SYNE2-213ENST00000554805 AKAP11Q9UKA4 1901 aa10.69□□□□□ -0.7
SYNE2-213ENST00000554805 PSMA7O14818 248 aa10.68□□□□□ -0.7
SYNE2-213ENST00000554805 USP5P45974 858 aa10.68□□□□□ -0.7
SYNE2-213ENST00000554805 MTIF2P46199 727 aaKnown RBP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms