RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 IFIT1BQ5T764 474 aaKnown RBP15.51■□□□□ 0.07
VPS33A-208ENST00000543633 ARL6IP4Q66PJ3 421 aaKnown RBP15.51■□□□□ 0.07
VPS33A-208ENST00000543633 PDXDC2PQ6P474 469 aa15.51■□□□□ 0.07
VPS33A-208ENST00000543633 CTAGE6Q86UF2 777 aa15.51■□□□□ 0.07
VPS33A-208ENST00000543633 CTAGE4Q8IX94 777 aa15.51■□□□□ 0.07
VPS33A-208ENST00000543633 SLC4A9Q96Q91 983 aa15.51■□□□□ 0.07
VPS33A-208ENST00000543633 CDC5LQ99459 802 aaKnown RBP15.51■□□□□ 0.07
VPS33A-208ENST00000543633 ACBD3Q9H3P7 528 aa15.51■□□□□ 0.07
VPS33A-208ENST00000543633 AFF2P51816 1311 aa15.5■□□□□ 0.07
VPS33A-208ENST00000543633 FAM205CA6NFA0 338 aa15.5■□□□□ 0.07
VPS33A-208ENST00000543633 CYP7A1P22680 504 aa15.5■□□□□ 0.07
VPS33A-208ENST00000543633 STX17P56962 302 aa15.5■□□□□ 0.07
VPS33A-208ENST00000543633 ZNF658Q5TYW1 1059 aaPredicted RBP15.5■□□□□ 0.07
VPS33A-208ENST00000543633 ZNF662Q6ZS27 426 aa15.5■□□□□ 0.07
VPS33A-208ENST00000543633 SLC35F6Q8N357 371 aa15.5■□□□□ 0.07
VPS33A-208ENST00000543633 CCDC82Q8N4S0 544 aa15.5■□□□□ 0.07
VPS33A-208ENST00000543633 GOLGA5Q8TBA6 731 aa15.5■□□□□ 0.07
VPS33A-208ENST00000543633 IRX2Q9BZI1 471 aaPredicted RBP15.5■□□□□ 0.07
VPS33A-208ENST00000543633 L1RE1Q9UN81 338 aa15.5■□□□□ 0.07
VPS33A-208ENST00000543633 N4BP3O15049 544 aa15.5■□□□□ 0.07
VPS33A-208ENST00000543633 GTF2E1P29083 439 aaPredicted RBP15.5■□□□□ 0.07
VPS33A-208ENST00000543633 TROAPQ12815 778 aa15.5■□□□□ 0.07
VPS33A-208ENST00000543633 EARS2Q5JPH6 523 aaKnown RBP15.5■□□□□ 0.07
VPS33A-208ENST00000543633 MEX3CQ5U5Q3 659 aaKnown RBP15.5■□□□□ 0.07
VPS33A-208ENST00000543633 CMTR1Q8N1G2 835 aaKnown RBP15.5■□□□□ 0.07
VPS33A-208ENST00000543633 KAT6BQ8WYB5 2073 aa15.49■□□□□ 0.07
VPS33A-208ENST00000543633 A0A1W2PQC6 194 aa15.49■□□□□ 0.07
VPS33A-208ENST00000543633 MYL1P05976 194 aa15.49■□□□□ 0.07
VPS33A-208ENST00000543633 MCM3P25205 808 aa15.49■□□□□ 0.07
VPS33A-208ENST00000543633 LONP1P36776 959 aaKnown RBP15.49■□□□□ 0.07
VPS33A-208ENST00000543633 ARHGAP25P42331 645 aa15.49■□□□□ 0.07
VPS33A-208ENST00000543633 BCAMP50895 628 aa15.49■□□□□ 0.07
VPS33A-208ENST00000543633 ERVK-24P63145 666 aa15.49■□□□□ 0.07
VPS33A-208ENST00000543633 ST5P78524 1137 aa15.49■□□□□ 0.07
VPS33A-208ENST00000543633 AMPD2Q01433 879 aa15.49■□□□□ 0.07
VPS33A-208ENST00000543633 TCP11X2Q5H9J9 407 aa15.49■□□□□ 0.07
VPS33A-208ENST00000543633 WDR93Q6P2C0 686 aa15.49■□□□□ 0.07
VPS33A-208ENST00000543633 NEK11Q8NG66 645 aa15.49■□□□□ 0.07
VPS33A-208ENST00000543633 RIOK1Q9BRS2 568 aaKnown RBP15.49■□□□□ 0.07
VPS33A-208ENST00000543633 GNL3LQ9NVN8 582 aaKnown RBP15.49■□□□□ 0.07
VPS33A-208ENST00000543633 ADAM21Q9UKJ8 722 aa15.49■□□□□ 0.07
VPS33A-208ENST00000543633 BAZ2AQ9UIF9 1905 aaKnown RBP15.49■□□□□ 0.07
VPS33A-208ENST00000543633 KIAA1551Q9HCM1 1747 aa15.48■□□□□ 0.07
VPS33A-208ENST00000543633 H3BQF6 201 aa15.48■□□□□ 0.07
VPS33A-208ENST00000543633 H7C1D1 291 aa15.48■□□□□ 0.07
VPS33A-208ENST00000543633 ORC4O43929 436 aa15.48■□□□□ 0.07
VPS33A-208ENST00000543633 IRX5P78411 483 aaPredicted RBP15.48■□□□□ 0.07
VPS33A-208ENST00000543633 PTGDRQ13258 359 aa15.48■□□□□ 0.07
VPS33A-208ENST00000543633 RRAGBQ5VZM2 374 aa15.48■□□□□ 0.07
VPS33A-208ENST00000543633 MIGA1Q8NAN2 632 aa15.48■□□□□ 0.07
VPS33A-208ENST00000543633 CPLX3Q8WVH0 158 aa15.48■□□□□ 0.07
VPS33A-208ENST00000543633 GJD4Q96KN9 370 aaPredicted RBP15.48■□□□□ 0.07
VPS33A-208ENST00000543633 KCNJ18B7U540 433 aa15.48■□□□□ 0.07
VPS33A-208ENST00000543633 RPS6KA5O75582 802 aa15.48■□□□□ 0.07
VPS33A-208ENST00000543633 EIF5P55010 431 aaKnown RBP15.48■□□□□ 0.07
VPS33A-208ENST00000543633 KCNJ12Q14500 433 aa15.48■□□□□ 0.07
VPS33A-208ENST00000543633 PNKPQ96T60 521 aa15.48■□□□□ 0.07
VPS33A-208ENST00000543633 VIPAS39Q9H9C1 493 aa15.48■□□□□ 0.07
VPS33A-208ENST00000543633 PUF60Q9UHX1 559 aaKnown RBP15.48■□□□□ 0.07
VPS33A-208ENST00000543633 V9GY48 417 aaPredicted RBP15.48■□□□□ 0.07
VPS33A-208ENST00000543633 MINDY4BA8MYZ0 360 aa15.47■□□□□ 0.07
VPS33A-208ENST00000543633 PLEKHA8P1O95397 391 aa15.47■□□□□ 0.07
VPS33A-208ENST00000543633 CALML3P27482 149 aa15.47■□□□□ 0.07
VPS33A-208ENST00000543633 ZSCAN26Q16670 478 aa15.47■□□□□ 0.07
VPS33A-208ENST00000543633 SUSD4Q5VX71 490 aa15.47■□□□□ 0.07
VPS33A-208ENST00000543633 EHBP1Q8NDI1 1231 aa15.47■□□□□ 0.07
VPS33A-208ENST00000543633 ACRBPQ8NEB7 543 aa15.47■□□□□ 0.07
VPS33A-208ENST00000543633 CTCFLQ8NI51 663 aaPredicted RBP15.47■□□□□ 0.07
VPS33A-208ENST00000543633 FAM71BQ8TC56 605 aa15.47■□□□□ 0.07
VPS33A-208ENST00000543633 NOC3LQ8WTT2 800 aaKnown RBP15.47■□□□□ 0.07
VPS33A-208ENST00000543633 NELFBQ8WX92 580 aa15.47■□□□□ 0.07
VPS33A-208ENST00000543633 RPGRIP1Q96KN7 1286 aa15.47■□□□□ 0.07
VPS33A-208ENST00000543633 NUP88Q99567 741 aaPredicted RBP15.47■□□□□ 0.07
VPS33A-208ENST00000543633 HAUS4Q9H6D7 363 aa15.47■□□□□ 0.07
VPS33A-208ENST00000543633 MED4Q9NPJ6 270 aa15.47■□□□□ 0.07
VPS33A-208ENST00000543633 MYO6Q9UM54 1294 aa15.47■□□□□ 0.07
VPS33A-208ENST00000543633 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.47■□□□□ 0.07
VPS33A-208ENST00000543633 PDS5AQ29RF7 1337 aaKnown RBP15.47■□□□□ 0.07
VPS33A-208ENST00000543633 PSMD14O00487 310 aa15.46■□□□□ 0.07
VPS33A-208ENST00000543633 ONECUT3O60422 494 aaPredicted RBP15.46■□□□□ 0.07
VPS33A-208ENST00000543633 SCG2P13521 617 aa15.46■□□□□ 0.07
VPS33A-208ENST00000543633 EEF1GP26641 437 aaKnown RBP15.46■□□□□ 0.07
VPS33A-208ENST00000543633 RAD51AP2Q09MP3 1159 aa15.46■□□□□ 0.07
VPS33A-208ENST00000543633 KCNB1Q14721 858 aa15.46■□□□□ 0.07
VPS33A-208ENST00000543633 ZNF174Q15697 407 aa15.46■□□□□ 0.07
VPS33A-208ENST00000543633 SMYD4Q8IYR2 804 aaPredicted RBP15.46■□□□□ 0.07
VPS33A-208ENST00000543633 CCDC148Q8NFR7 591 aa15.46■□□□□ 0.07
VPS33A-208ENST00000543633 DNAJC7Q99615 494 aa15.46■□□□□ 0.07
VPS33A-208ENST00000543633 ZCCHC17Q9NP64 241 aaKnown RBP15.46■□□□□ 0.07
VPS33A-208ENST00000543633 SH3GLB2Q9NR46 395 aa15.46■□□□□ 0.07
VPS33A-208ENST00000543633 CASZ1Q86V15 1759 aa15.46■□□□□ 0.07
VPS33A-208ENST00000543633 LGALS16A8MUM7 142 aa15.46■□□□□ 0.07
VPS33A-208ENST00000543633 RPN1P04843 607 aaKnown RBP15.46■□□□□ 0.07
VPS33A-208ENST00000543633 IVLP07476 585 aa15.46■□□□□ 0.07
VPS33A-208ENST00000543633 KRT9P35527 623 aa15.46■□□□□ 0.07
VPS33A-208ENST00000543633 ACTN2P35609 894 aa15.46■□□□□ 0.07
VPS33A-208ENST00000543633 CCT6AP40227 531 aaKnown RBP15.46■□□□□ 0.07
VPS33A-208ENST00000543633 CHRNDQ07001 517 aa15.46■□□□□ 0.07
VPS33A-208ENST00000543633 UBE4AQ14139 1066 aa15.46■□□□□ 0.07
VPS33A-208ENST00000543633 SDR42E1Q8WUS8 393 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms