RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 GOLGA8FQ08AF8 430 aa19.59■□□□□ 0.73
SPIDR-227ENST00000541342 GOLGA8DPQ0D2H9 430 aa19.59■□□□□ 0.73
SPIDR-227ENST00000541342 EYA3Q99504 573 aa19.59■□□□□ 0.73
SPIDR-227ENST00000541342 TTF2Q9UNY4 1162 aaKnown RBP19.59■□□□□ 0.73
SPIDR-227ENST00000541342 hCG_1642624A0A1W2PR95 340 aa19.59■□□□□ 0.73
SPIDR-227ENST00000541342 USP17L3A6NCW0 530 aa19.59■□□□□ 0.73
SPIDR-227ENST00000541342 USP17L4A6NCW7 530 aa19.59■□□□□ 0.73
SPIDR-227ENST00000541342 PPP6R2O75170 966 aa19.59■□□□□ 0.73
SPIDR-227ENST00000541342 BMP6P22004 513 aa19.59■□□□□ 0.73
SPIDR-227ENST00000541342 RESP18Q5W5W9 173 aa19.59■□□□□ 0.73
SPIDR-227ENST00000541342 USP17L1Q7RTZ2 530 aa19.59■□□□□ 0.73
SPIDR-227ENST00000541342 INTS13Q9NVM9 706 aa19.59■□□□□ 0.73
SPIDR-227ENST00000541342 RBM28Q9NW13 759 aaKnown RBP19.59■□□□□ 0.73
SPIDR-227ENST00000541342 SNED1Q8TER0 1413 aa19.58■□□□□ 0.73
SPIDR-227ENST00000541342 TMEM232C9JQI7 657 aa19.58■□□□□ 0.73
SPIDR-227ENST00000541342 RASA1P20936 1047 aa19.58■□□□□ 0.73
SPIDR-227ENST00000541342 TERF2Q15554 542 aa19.58■□□□□ 0.73
SPIDR-227ENST00000541342 C7orf43Q8WVR3 580 aa19.58■□□□□ 0.73
SPIDR-227ENST00000541342 C16orf86Q6ZW13 317 aa19.58■□□□□ 0.72
SPIDR-227ENST00000541342 TMTC3Q6ZXV5 915 aa19.58■□□□□ 0.72
SPIDR-227ENST00000541342 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.58■□□□□ 0.722e-6■■■■□ 25.9
SPIDR-227ENST00000541342 BTBD18B2RXH4 712 aa19.58■□□□□ 0.72
SPIDR-227ENST00000541342 SCNN1DP51172 638 aa19.58■□□□□ 0.72
SPIDR-227ENST00000541342 TPM4P67936 248 aa19.58■□□□□ 0.72
SPIDR-227ENST00000541342 ETF1P62495 437 aaKnown RBP19.57■□□□□ 0.72
SPIDR-227ENST00000541342 MYL5Q02045 173 aa19.57■□□□□ 0.72
SPIDR-227ENST00000541342 GNL2Q13823 731 aaKnown RBP19.57■□□□□ 0.72
SPIDR-227ENST00000541342 LONRF3Q496Y0 759 aa19.57■□□□□ 0.72
SPIDR-227ENST00000541342 TMEM139Q8IV31 216 aa19.57■□□□□ 0.72
SPIDR-227ENST00000541342 SRBD1Q8N5C6 995 aaKnown RBP19.57■□□□□ 0.72
SPIDR-227ENST00000541342 BAZ2BQ9UIF8 2168 aaKnown RBP19.57■□□□□ 0.72
SPIDR-227ENST00000541342 G3V3G9 751 aa19.57■□□□□ 0.72
SPIDR-227ENST00000541342 PRPF3O43395 683 aaKnown RBP19.57■□□□□ 0.72
SPIDR-227ENST00000541342 CDK8P49336 464 aa19.57■□□□□ 0.72
SPIDR-227ENST00000541342 UBASH3AP57075 661 aa19.57■□□□□ 0.72
SPIDR-227ENST00000541342 DCAF8Q5TAQ9 597 aa19.57■□□□□ 0.72
SPIDR-227ENST00000541342 TSPY3P0CV98 308 aa19.56■□□□□ 0.72
SPIDR-227ENST00000541342 TSPY8P0CW00 308 aa19.56■□□□□ 0.72
SPIDR-227ENST00000541342 DGKHQ86XP1 1220 aa19.56■□□□□ 0.72
SPIDR-227ENST00000541342 VSTM4Q8IW00 320 aa19.56■□□□□ 0.72
SPIDR-227ENST00000541342 DIS3L2Q8IYB7 885 aaKnown RBP19.56■□□□□ 0.72
SPIDR-227ENST00000541342 ANKS1AQ92625 1134 aa19.56■□□□□ 0.72
SPIDR-227ENST00000541342 V9GY48 417 aaPredicted RBP19.56■□□□□ 0.72
SPIDR-227ENST00000541342 CNTNAP5Q8WYK1 1306 aa19.56■□□□□ 0.72
SPIDR-227ENST00000541342 FOXN1O15353 648 aa19.56■□□□□ 0.72
SPIDR-227ENST00000541342 ZNF771Q7L3S4 317 aaPredicted RBP19.56■□□□□ 0.72
SPIDR-227ENST00000541342 PODNQ7Z5L7 613 aa19.56■□□□□ 0.72
SPIDR-227ENST00000541342 REXO1L1PQ8IX06 675 aa19.56■□□□□ 0.72
SPIDR-227ENST00000541342 CNKSR1Q969H4 720 aa19.56■□□□□ 0.72
SPIDR-227ENST00000541342 TCP11L1Q9NUJ3 509 aa19.56■□□□□ 0.72
SPIDR-227ENST00000541342 NT5C2P49902 561 aa19.56■□□□□ 0.72
SPIDR-227ENST00000541342 NOSTRINQ8IVI9 506 aa19.56■□□□□ 0.72
SPIDR-227ENST00000541342 ZNF444Q8N0Y2 327 aaPredicted RBP19.56■□□□□ 0.72
SPIDR-227ENST00000541342 DDX4Q9NQI0 724 aaKnown RBP19.56■□□□□ 0.72
SPIDR-227ENST00000541342 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.56■□□□□ 0.72
SPIDR-227ENST00000541342 FANCLQ9NW38 375 aa19.56■□□□□ 0.72
SPIDR-227ENST00000541342 FHOD1Q9Y613 1164 aa19.56■□□□□ 0.72
SPIDR-227ENST00000541342 PHLPP2Q6ZVD8 1323 aa19.55■□□□□ 0.72
SPIDR-227ENST00000541342 CLCN6P51797 869 aa19.55■□□□□ 0.72
SPIDR-227ENST00000541342 CTCFLQ8NI51 663 aaPredicted RBP19.55■□□□□ 0.72
SPIDR-227ENST00000541342 OXER1Q8TDS5 423 aa19.55■□□□□ 0.72
SPIDR-227ENST00000541342 NR5A1Q13285 461 aa19.55■□□□□ 0.72
SPIDR-227ENST00000541342 PICALMQ13492 652 aa19.55■□□□□ 0.72
SPIDR-227ENST00000541342 KAT14Q9H8E8 782 aa19.55■□□□□ 0.72
SPIDR-227ENST00000541342 VPS54Q9P1Q0 977 aa19.55■□□□□ 0.72
SPIDR-227ENST00000541342 DNAI1Q9UI46 699 aa19.55■□□□□ 0.72
SPIDR-227ENST00000541342 MDM2Q00987 491 aaPredicted RBP19.54■□□□□ 0.72
SPIDR-227ENST00000541342 ECE2O60344 883 aa19.54■□□□□ 0.72
SPIDR-227ENST00000541342 PNMA1Q8ND90 353 aa19.54■□□□□ 0.72
SPIDR-227ENST00000541342 FOXP1Q9H334 677 aaPredicted RBP19.54■□□□□ 0.72
SPIDR-227ENST00000541342 PCDHA5Q9Y5H7 936 aa19.54■□□□□ 0.72
SPIDR-227ENST00000541342 SERPINC1P01008 464 aa19.54■□□□□ 0.72
SPIDR-227ENST00000541342 TOB1P50616 345 aaPredicted RBP19.54■□□□□ 0.72
SPIDR-227ENST00000541342 AKAP17AQ02040 695 aaKnown RBP19.54■□□□□ 0.72
SPIDR-227ENST00000541342 DHX8Q14562 1220 aaKnown RBP19.54■□□□□ 0.72
SPIDR-227ENST00000541342 KRBA2Q6ZNG9 492 aa19.54■□□□□ 0.72
SPIDR-227ENST00000541342 FBXO41Q8TF61 875 aa19.54■□□□□ 0.72
SPIDR-227ENST00000541342 C10orf71Q711Q0 1435 aa19.54■□□□□ 0.72
SPIDR-227ENST00000541342 BAG6P46379 1132 aa19.53■□□□□ 0.72
SPIDR-227ENST00000541342 CFAP100Q494V2 611 aa19.53■□□□□ 0.72
SPIDR-227ENST00000541342 APOBEC3HQ6NTF7 200 aaKnown RBP19.53■□□□□ 0.72
SPIDR-227ENST00000541342 SAFBQ15424 915 aaKnown RBP eCLIP19.53■□□□□ 0.72
SPIDR-227ENST00000541342 AOC3Q16853 763 aa19.53■□□□□ 0.72
SPIDR-227ENST00000541342 HHIPL2Q6UWX4 724 aa19.53■□□□□ 0.72
SPIDR-227ENST00000541342 HOMER1Q86YM7 354 aa19.53■□□□□ 0.72
SPIDR-227ENST00000541342 GRIN1Q05586 938 aa19.53■□□□□ 0.72
SPIDR-227ENST00000541342 ARHGAP29Q52LW3 1261 aa19.53■□□□□ 0.72
SPIDR-227ENST00000541342 SPECC1Q5M775 1068 aa19.53■□□□□ 0.72
SPIDR-227ENST00000541342 CDC42EP5Q6NZY7 148 aa19.53■□□□□ 0.72
SPIDR-227ENST00000541342 PHF20Q9BVI0 1012 aa19.53■□□□□ 0.72
SPIDR-227ENST00000541342 USP40Q9NVE5 1235 aa19.53■□□□□ 0.72
SPIDR-227ENST00000541342 KCNH3Q9ULD8 1083 aa19.53■□□□□ 0.72
SPIDR-227ENST00000541342 PCDHAC2Q9Y5I4 1007 aa19.53■□□□□ 0.72
SPIDR-227ENST00000541342 TUBB4AP04350 444 aa19.52■□□□□ 0.72
SPIDR-227ENST00000541342 DACT2Q5SW24 774 aa19.52■□□□□ 0.72
SPIDR-227ENST00000541342 JMYQ8N9B5 988 aa19.52■□□□□ 0.72
SPIDR-227ENST00000541342 ZNF287Q9HBT7 754 aa19.52■□□□□ 0.72
SPIDR-227ENST00000541342 MYH8P13535 1937 aa19.52■□□□□ 0.72
SPIDR-227ENST00000541342 VWA3AA6NCI4 1184 aa19.52■□□□□ 0.72
SPIDR-227ENST00000541342 VEGFAP15692 232 aaPredicted RBP19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms