RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 DLGAP5Q15398 846 aa14.6□□□□□ -0.07
TCOF1-213ENST00000514442 HLFQ16534 295 aa14.6□□□□□ -0.07
TCOF1-213ENST00000514442 EPHA10Q5JZY3 1008 aa14.6□□□□□ -0.07
TCOF1-213ENST00000514442 NCAPH2Q6IBW4 605 aa14.6□□□□□ -0.07
TCOF1-213ENST00000514442 USP28Q96RU2 1077 aa14.6□□□□□ -0.07
TCOF1-213ENST00000514442 ZNF408Q9H9D4 720 aa14.6□□□□□ -0.07
TCOF1-213ENST00000514442 PSD3Q9NYI0 1048 aa14.6□□□□□ -0.07
TCOF1-213ENST00000514442 TRAF5O00463 557 aa14.6□□□□□ -0.07
TCOF1-213ENST00000514442 ATP2B4P23634 1241 aa14.6□□□□□ -0.07
TCOF1-213ENST00000514442 GDAP1L1Q96MZ0 367 aa14.6□□□□□ -0.07
TCOF1-213ENST00000514442 BIN2Q9UBW5 565 aaPredicted RBP14.6□□□□□ -0.07
TCOF1-213ENST00000514442 SCRN1Q12765 414 aa14.6□□□□□ -0.07
TCOF1-213ENST00000514442 CASP8Q14790 479 aa14.6□□□□□ -0.07
TCOF1-213ENST00000514442 NIM1KQ8IY84 436 aa14.6□□□□□ -0.07
TCOF1-213ENST00000514442 IFT81Q8WYA0 676 aa14.6□□□□□ -0.07
TCOF1-213ENST00000514442 TULP4Q9NRJ4 1543 aa14.6□□□□□ -0.07
TCOF1-213ENST00000514442 DYNLL1P63167 89 aaKnown RBP14.6□□□□□ -0.07
TCOF1-213ENST00000514442 LRRC47Q8N1G4 583 aaKnown RBP14.6□□□□□ -0.07
TCOF1-213ENST00000514442 CCDC42Q96M95 316 aa14.6□□□□□ -0.07
TCOF1-213ENST00000514442 BLZF1Q9H2G9 400 aa14.6□□□□□ -0.07
TCOF1-213ENST00000514442 TRIM14Q14142 442 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 CPSF1Q10570 1443 aaKnown RBP14.59□□□□□ -0.07
TCOF1-213ENST00000514442 MYCLP12524 364 aaPredicted RBP14.59□□□□□ -0.07
TCOF1-213ENST00000514442 UBE3CQ15386 1083 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 DYMQ7RTS9 669 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 GPIHBP1Q8IV16 184 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 FANCBQ8NB91 859 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 DNAI2Q9GZS0 605 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 ABCB6Q9NP58 842 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 GPR108Q9NPR9 543 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 CAMSAP1Q5T5Y3 1602 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 CFBP00751 764 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 IGKV5-2P06315 115 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 PDIA3P30101 505 aaKnown RBP14.59□□□□□ -0.07
TCOF1-213ENST00000514442 RBBP5Q15291 538 aaKnown RBP14.59□□□□□ -0.07
TCOF1-213ENST00000514442 CCDC65Q8IXS2 484 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 SUPT20HQ8NEM7 779 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 SNX29Q8TEQ0 813 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 LRWD1Q9UFC0 647 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 PRKAB2O43741 272 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 HPDP32754 393 aaPredicted RBP14.59□□□□□ -0.07
TCOF1-213ENST00000514442 BAG6P46379 1132 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 UBE4AQ14139 1066 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 POLA2Q14181 598 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 SUSD4Q5VX71 490 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 MAEAQ7L5Y9 396 aa14.59□□□□□ -0.07
TCOF1-213ENST00000514442 GPKOWQ92917 476 aaPredicted RBP eCLIP14.59□□□□□ -0.07
TCOF1-213ENST00000514442 PNOCQ13519 176 aa14.58□□□□□ -0.07
TCOF1-213ENST00000514442 KRT25Q7Z3Z0 450 aa14.58□□□□□ -0.07
TCOF1-213ENST00000514442 TSGA10Q9BZW7 698 aa14.58□□□□□ -0.07
TCOF1-213ENST00000514442 FRMD3A2A2Y4 597 aa14.58□□□□□ -0.08
TCOF1-213ENST00000514442 E7EVH7 732 aa14.58□□□□□ -0.08
TCOF1-213ENST00000514442 TRMT44Q8IYL2 757 aaKnown RBP14.58□□□□□ -0.08
TCOF1-213ENST00000514442 PUS7LQ9H0K6 701 aaKnown RBP14.58□□□□□ -0.08
TCOF1-213ENST00000514442 OSBPL5Q9H0X9 879 aaPredicted RBP14.58□□□□□ -0.08
TCOF1-213ENST00000514442 TBC1D7Q9P0N9 293 aa14.58□□□□□ -0.08
TCOF1-213ENST00000514442 LUC7L2Q9Y383 392 aaKnown RBP14.58□□□□□ -0.08
TCOF1-213ENST00000514442 NFE2L3Q9Y4A8 694 aa14.58□□□□□ -0.08
TCOF1-213ENST00000514442 ZMYM6O95789 1325 aa14.58□□□□□ -0.08
TCOF1-213ENST00000514442 PPP2R5BQ15173 497 aa14.58□□□□□ -0.08
TCOF1-213ENST00000514442 SYNE4Q8N205 404 aa14.58□□□□□ -0.08
TCOF1-213ENST00000514442 MLKLQ8NB16 471 aa14.58□□□□□ -0.08
TCOF1-213ENST00000514442 PNMA1Q8ND90 353 aa14.58□□□□□ -0.08
TCOF1-213ENST00000514442 SAMD15Q9P1V8 674 aa14.58□□□□□ -0.08
TCOF1-213ENST00000514442 LRRC7Q96NW7 1537 aa14.58□□□□□ -0.08
TCOF1-213ENST00000514442 CLTCQ00610 1675 aaKnown RBP14.58□□□□□ -0.08
TCOF1-213ENST00000514442 SMCO2A6NFE2 343 aa14.58□□□□□ -0.08
TCOF1-213ENST00000514442 TCP10L2B9ZVM9 353 aa14.58□□□□□ -0.08
TCOF1-213ENST00000514442 SERPINB2P05120 415 aa14.58□□□□□ -0.08
TCOF1-213ENST00000514442 RAPGEF1Q13905 1077 aa14.58□□□□□ -0.08
TCOF1-213ENST00000514442 USP37Q86T82 979 aa14.58□□□□□ -0.08
TCOF1-213ENST00000514442 NAP1L4Q99733 375 aaKnown RBP14.58□□□□□ -0.08
TCOF1-213ENST00000514442 TACO1Q9BSH4 297 aaKnown RBP14.58□□□□□ -0.08
TCOF1-213ENST00000514442 SYNRGQ9UMZ2 1314 aa14.58□□□□□ -0.08
TCOF1-213ENST00000514442 BCS1LQ9Y276 419 aa14.58□□□□□ -0.08
TCOF1-213ENST00000514442 REREQ9P2R6 1566 aa14.57□□□□□ -0.08
TCOF1-213ENST00000514442 PALLDQ8WX93 1383 aa14.57□□□□□ -0.08
TCOF1-213ENST00000514442 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.57□□□□□ -0.08
TCOF1-213ENST00000514442 TMEM110-MUSTN1A8MSY1 372 aa14.57□□□□□ -0.08
TCOF1-213ENST00000514442 LACTBP83111 547 aaPredicted RBP14.57□□□□□ -0.08
TCOF1-213ENST00000514442 OSBP2Q969R2 916 aa14.57□□□□□ -0.08
TCOF1-213ENST00000514442 NOC4LQ9BVI4 516 aaKnown RBP14.57□□□□□ -0.08
TCOF1-213ENST00000514442 BAIAP2L1Q9UHR4 511 aa14.57□□□□□ -0.08
TCOF1-213ENST00000514442 GJC1P36383 396 aa14.57□□□□□ -0.08
TCOF1-213ENST00000514442 POSTNQ15063 836 aa14.57□□□□□ -0.08
TCOF1-213ENST00000514442 SERTAD1Q9UHV2 236 aa14.57□□□□□ -0.08
TCOF1-213ENST00000514442 NSMFQ6X4W1 530 aa14.57□□□□□ -0.08
TCOF1-213ENST00000514442 DPH6Q7L8W6 267 aa14.57□□□□□ -0.08
TCOF1-213ENST00000514442 REXO1Q8N1G1 1221 aaKnown RBP14.57□□□□□ -0.08
TCOF1-213ENST00000514442 KIFC2Q96AC6 838 aa14.57□□□□□ -0.08
TCOF1-213ENST00000514442 SYNCQ9H7C4 482 aa14.57□□□□□ -0.08
TCOF1-213ENST00000514442 RIPOR2Q9Y4F9 1068 aa14.57□□□□□ -0.08
TCOF1-213ENST00000514442 MED23Q9ULK4 1368 aa14.57□□□□□ -0.08
TCOF1-213ENST00000514442 HARSP12081 509 aaKnown RBP14.57□□□□□ -0.08
TCOF1-213ENST00000514442 PLA2G4AP47712 749 aa14.57□□□□□ -0.08
TCOF1-213ENST00000514442 CALCRLQ16602 461 aa14.57□□□□□ -0.08
TCOF1-213ENST00000514442 PI4K2BQ8TCG2 481 aa14.57□□□□□ -0.08
TCOF1-213ENST00000514442 TMOD4Q9NZQ9 345 aa14.57□□□□□ -0.08
TCOF1-213ENST00000514442 SWAP70Q9UH65 585 aa14.57□□□□□ -0.08
TCOF1-213ENST00000514442 TADA3O75528 432 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms