RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 SKOR1P84550 965 aa12.29□□□□□ -0.44
LIMCH1-208ENST00000508501 NR1H3Q13133 447 aa12.29□□□□□ -0.44
LIMCH1-208ENST00000508501 GLE1Q53GS7 698 aaKnown RBP12.29□□□□□ -0.44
LIMCH1-208ENST00000508501 ESCO1Q5FWF5 840 aa12.29□□□□□ -0.44
LIMCH1-208ENST00000508501 H2AFVQ71UI9 128 aa12.29□□□□□ -0.44
LIMCH1-208ENST00000508501 TEX9Q8N6V9 391 aa12.29□□□□□ -0.44
LIMCH1-208ENST00000508501 NBPF3Q9H094 633 aa12.29□□□□□ -0.44
LIMCH1-208ENST00000508501 ZNF277Q9NRM2 450 aaPredicted RBP12.29□□□□□ -0.44
LIMCH1-208ENST00000508501 KIAA1468Q9P260 1216 aa12.29□□□□□ -0.44
LIMCH1-208ENST00000508501 IPO11Q9UI26 975 aaKnown RBP12.29□□□□□ -0.44
LIMCH1-208ENST00000508501 VWA3AA6NCI4 1184 aa12.29□□□□□ -0.44
LIMCH1-208ENST00000508501 KRT75O95678 551 aa12.29□□□□□ -0.44
LIMCH1-208ENST00000508501 INHBAP08476 426 aa12.29□□□□□ -0.44
LIMCH1-208ENST00000508501 RNASE9P60153 205 aaKnown RBP12.29□□□□□ -0.44
LIMCH1-208ENST00000508501 CERS3Q8IU89 383 aa12.29□□□□□ -0.44
LIMCH1-208ENST00000508501 TMEM60Q9H2L4 133 aa12.29□□□□□ -0.44
LIMCH1-208ENST00000508501 ADCY2Q08462 1091 aa12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 FAM133BQ5BKY9 247 aaKnown RBP12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 RAB44Q7Z6P3 723 aaPredicted RBP12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 CDAN1Q8IWY9 1227 aa12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 TEX11Q8IYF3 940 aa12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 OR9Q1Q8NGQ5 310 aa12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 PHKBQ93100 1093 aa12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 TADA3O75528 432 aa12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 TRPA1O75762 1119 aa12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 NR1D1P20393 614 aa12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 METTL14Q9HCE5 456 aaKnown RBP12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 TAB2Q9NYJ8 693 aa12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 STMN3Q9NZ72 180 aa12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 GSTA1P08263 222 aa12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 GSTA2P09210 222 aa12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 MRPS15P82914 257 aaKnown RBP12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 KRT25Q7Z3Z0 450 aa12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 FAM186BQ8IYM0 893 aa12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 SH3GL2Q99962 352 aa12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 KIF9Q9HAQ2 790 aa12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 TRPC5Q9UL62 973 aaPredicted RBP12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 EPN1Q9Y6I3 576 aaPredicted RBP12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 CUL1Q13616 776 aa12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 ATP2B3Q16720 1220 aa12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 NELFBQ8WX92 580 aa12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 LZTS2Q9BRK4 669 aa12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 DBNLQ9UJU6 430 aaKnown RBP12.28□□□□□ -0.44
LIMCH1-208ENST00000508501 CADPSQ9ULU8 1353 aa12.27□□□□□ -0.44
LIMCH1-208ENST00000508501 TMED10P49755 219 aaKnown RBP12.27□□□□□ -0.44
LIMCH1-208ENST00000508501 MAP3K10Q02779 954 aa12.27□□□□□ -0.44
LIMCH1-208ENST00000508501 RNF207Q6ZRF8 634 aa12.27□□□□□ -0.44
LIMCH1-208ENST00000508501 TDRD7Q8NHU6 1098 aaKnown RBP12.27□□□□□ -0.44
LIMCH1-208ENST00000508501 PBKQ96KB5 322 aa12.27□□□□□ -0.44
LIMCH1-208ENST00000508501 NT5C3AQ9H0P0 336 aa12.27□□□□□ -0.44
LIMCH1-208ENST00000508501 PAG1Q9NWQ8 432 aa12.27□□□□□ -0.44
LIMCH1-208ENST00000508501 NDE1Q9NXR1 346 aa12.27□□□□□ -0.44
LIMCH1-208ENST00000508501 TRPC6Q9Y210 931 aa12.27□□□□□ -0.44
LIMCH1-208ENST00000508501 MAP3K2Q9Y2U5 619 aa12.27□□□□□ -0.44
LIMCH1-208ENST00000508501 PRPF6O94906 941 aaKnown RBP12.27□□□□□ -0.45
LIMCH1-208ENST00000508501 CYP7A1P22680 504 aa12.27□□□□□ -0.45
LIMCH1-208ENST00000508501 TNNI2P48788 182 aa12.27□□□□□ -0.45
LIMCH1-208ENST00000508501 BEND3Q5T5X7 828 aa12.27□□□□□ -0.45
LIMCH1-208ENST00000508501 LRRC8BQ6P9F7 803 aa12.27□□□□□ -0.45
LIMCH1-208ENST00000508501 YIPF3Q9GZM5 350 aa12.27□□□□□ -0.45
LIMCH1-208ENST00000508501 MAGEF1Q9HAY2 307 aa12.27□□□□□ -0.45
LIMCH1-208ENST00000508501 BLVRAP53004 296 aa12.27□□□□□ -0.45
LIMCH1-208ENST00000508501 C10orf76Q5T2E6 689 aa12.27□□□□□ -0.45
LIMCH1-208ENST00000508501 TRIM11Q96F44 468 aa12.27□□□□□ -0.45
LIMCH1-208ENST00000508501 TRIM56Q9BRZ2 755 aaKnown RBP12.27□□□□□ -0.45
LIMCH1-208ENST00000508501 TBC1D23Q9NUY8 699 aa12.27□□□□□ -0.45
LIMCH1-208ENST00000508501 POLR2DO15514 142 aaKnown RBP12.27□□□□□ -0.45
LIMCH1-208ENST00000508501 TRPC1P48995 793 aa12.27□□□□□ -0.45
LIMCH1-208ENST00000508501 RRAGAQ7L523 313 aa12.27□□□□□ -0.45
LIMCH1-208ENST00000508501 MMEP08473 750 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 KRT10P13645 584 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 GUCY2DQ02846 1103 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 CEP55Q53EZ4 464 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 TTLL7Q6ZT98 887 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 C2CD5Q86YS7 1000 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 TEX2Q8IWB9 1127 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 TTC16Q8NEE8 873 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 FAM81BQ96LP2 452 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 MTRQ99707 1265 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 ZPR1O75312 459 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 P4HA1P13674 534 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 NNTQ13423 1086 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 PLCB4Q15147 1175 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 NCAPH2Q6IBW4 605 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 LZICQ8WZA0 190 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 KRT82Q9NSB4 513 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 TMOD3Q9NYL9 352 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 WDR97A6NE52 1622 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 EEF1GP26641 437 aaKnown RBP12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 DHX9Q08211 1270 aaKnown RBP12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 GRAMD1BQ3KR37 738 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 ANKLE2Q86XL3 938 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 C17orf53Q8N3J3 647 aaPredicted RBP12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 SSH2Q76I76 1423 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 ARHGDIAP52565 204 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 MDM2Q00987 491 aaPredicted RBP12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 ZC3H18Q86VM9 953 aaKnown RBP12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 PLEKHM2Q8IWE5 1019 aa12.26□□□□□ -0.45
LIMCH1-208ENST00000508501 CALR3Q96L12 384 aaKnown RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms