RNA–Protein interactions for RNA: ENST00000498041.1

RIF1-212, Transcript of replication timing regulatory factor 1, human

TSL 3

Gene RIF1, Length 776 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RIF1-212	ENST00000498041	SUCO	Q9UBS9	1254 aa	Known RBP	4.63	□□□□□ -1.67
RIF1-212	ENST00000498041	SLC12A7	Q9Y666	1083 aa		4.63	□□□□□ -1.67
RIF1-212	ENST00000498041	DBX1	A6NMT0	343 aa		4.62	□□□□□ -1.67
RIF1-212	ENST00000498041	TPP2	P29144	1249 aa	Predicted RBP	4.62	□□□□□ -1.67
RIF1-212	ENST00000498041	PMS1	P54277	932 aa	Known RBP	4.62	□□□□□ -1.67
RIF1-212	ENST00000498041	ZP2	Q05996	745 aa		4.62	□□□□□ -1.67
RIF1-212	ENST00000498041	ZYX	Q15942	572 aa	Known RBP	4.62	□□□□□ -1.67
RIF1-212	ENST00000498041	CLEC16A	Q2KHT3	1053 aa		4.62	□□□□□ -1.67
RIF1-212	ENST00000498041	FBLN7	Q53RD9	439 aa		4.62	□□□□□ -1.67
RIF1-212	ENST00000498041	TTC6	Q86TZ1	520 aa		4.62	□□□□□ -1.67
RIF1-212	ENST00000498041	TSPYL5	Q86VY4	417 aa	Predicted RBP	4.62	□□□□□ -1.67
RIF1-212	ENST00000498041	ENOX1	Q8TC92	643 aa	Known RBP	4.62	□□□□□ -1.67
RIF1-212	ENST00000498041	PI4K2B	Q8TCG2	481 aa		4.62	□□□□□ -1.67
RIF1-212	ENST00000498041	SMARCC1	Q92922	1105 aa	Predicted RBP	4.62	□□□□□ -1.67
RIF1-212	ENST00000498041	ANAPC16	Q96DE5	110 aa		4.62	□□□□□ -1.67
RIF1-212	ENST00000498041	ZNF512B	Q96KM6	892 aa	Predicted RBP	4.62	□□□□□ -1.67
RIF1-212	ENST00000498041	SLC38A3	Q99624	504 aa		4.62	□□□□□ -1.67
RIF1-212	ENST00000498041	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	4.62	□□□□□ -1.67
RIF1-212	ENST00000498041	MKRN2	Q9H000	416 aa	Known RBP	4.62	□□□□□ -1.67
RIF1-212	ENST00000498041	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	4.62	□□□□□ -1.67
RIF1-212	ENST00000498041	CARMIL2	Q6F5E8	1435 aa		4.62	□□□□□ -1.67
RIF1-212	ENST00000498041		A0A1W2PQH9	124 aa		4.61	□□□□□ -1.67
RIF1-212	ENST00000498041	DNAJA1	P31689	397 aa	Known RBP	4.61	□□□□□ -1.67
RIF1-212	ENST00000498041	CASP7	P55210	303 aa		4.61	□□□□□ -1.67
RIF1-212	ENST00000498041	NMI	Q13287	307 aa	Predicted RBP	4.61	□□□□□ -1.67
RIF1-212	ENST00000498041	PPP2R5E	Q16537	467 aa		4.61	□□□□□ -1.67
RIF1-212	ENST00000498041	GAB4	Q2WGN9	574 aa		4.61	□□□□□ -1.67
RIF1-212	ENST00000498041	BBS9	Q3SYG4	887 aa		4.61	□□□□□ -1.67
RIF1-212	ENST00000498041	NAALADL2	Q58DX5	795 aa		4.61	□□□□□ -1.67
RIF1-212	ENST00000498041	SLC23A3	Q6PIS1	610 aa		4.61	□□□□□ -1.67
RIF1-212	ENST00000498041	CCDC144CP	Q8IYA2	1237 aa		4.61	□□□□□ -1.67
RIF1-212	ENST00000498041	GML	Q99445	158 aa		4.61	□□□□□ -1.67
RIF1-212	ENST00000498041	PHAX	Q9H814	394 aa	Known RBP	4.61	□□□□□ -1.67
RIF1-212	ENST00000498041	CARS2	Q9HA77	564 aa	Known RBP	4.61	□□□□□ -1.67
RIF1-212	ENST00000498041	ZNF214	Q9UL59	606 aa	Predicted RBP	4.61	□□□□□ -1.67
RIF1-212	ENST00000498041	SHISA3	A0PJX4	238 aa		4.6	□□□□□ -1.67
RIF1-212	ENST00000498041	WASH4P	A8MWX3	477 aa		4.6	□□□□□ -1.67
RIF1-212	ENST00000498041		C9IYK1	514 aa		4.6	□□□□□ -1.67
RIF1-212	ENST00000498041	ESR1	P03372	595 aa		4.6	□□□□□ -1.67
RIF1-212	ENST00000498041	FGR	P09769	529 aa		4.6	□□□□□ -1.67
RIF1-212	ENST00000498041	AUH	Q13825	339 aa	Known RBP	4.6	□□□□□ -1.67
RIF1-212	ENST00000498041	NPM2	Q86SE8	214 aa	Known RBP	4.6	□□□□□ -1.67
RIF1-212	ENST00000498041	MCF2L2	Q86YR7	1114 aa		4.6	□□□□□ -1.67
RIF1-212	ENST00000498041	CREG2	Q8IUH2	290 aa		4.6	□□□□□ -1.67
RIF1-212	ENST00000498041	C7orf61	Q8IZ16	206 aa		4.6	□□□□□ -1.67
RIF1-212	ENST00000498041	FAM169B	Q8N8A8	192 aa		4.6	□□□□□ -1.67
RIF1-212	ENST00000498041	SYTL5	Q8TDW5	730 aa	Predicted RBP	4.6	□□□□□ -1.67
RIF1-212	ENST00000498041	C8orf37	Q96NL8	207 aa		4.6	□□□□□ -1.67
RIF1-212	ENST00000498041	KRTAP4-2	Q9BYR5	136 aa		4.6	□□□□□ -1.67
RIF1-212	ENST00000498041	PRDM14	Q9GZV8	571 aa		4.6	□□□□□ -1.67
RIF1-212	ENST00000498041	DUSP13	Q9UII6	198 aa		4.6	□□□□□ -1.67
RIF1-212	ENST00000498041	FBXL21	Q9UKT6	434 aa		4.6	□□□□□ -1.67
RIF1-212	ENST00000498041	PCDHB12	Q9Y5F1	795 aa		4.6	□□□□□ -1.67
RIF1-212	ENST00000498041	MRVI1	Q9Y6F6	885 aa		4.6	□□□□□ -1.67
RIF1-212	ENST00000498041	LTBP3	Q9NS15	1303 aa		4.6	□□□□□ -1.67
RIF1-212	ENST00000498041	SIGLEC6	O43699	453 aa		4.59	□□□□□ -1.67
RIF1-212	ENST00000498041	TP53	P04637	393 aa	Predicted RBP	4.59	□□□□□ -1.67
RIF1-212	ENST00000498041	RNASE1	P07998	156 aa	Known RBP	4.59	□□□□□ -1.67
RIF1-212	ENST00000498041	LTK	P29376	864 aa		4.59	□□□□□ -1.67
RIF1-212	ENST00000498041	SNW1	Q13573	536 aa	Known RBP	4.59	□□□□□ -1.67
RIF1-212	ENST00000498041	GNPTAB	Q3T906	1256 aa		4.59	□□□□□ -1.67
RIF1-212	ENST00000498041	ANKRD39	Q53RE8	183 aa		4.59	□□□□□ -1.67
RIF1-212	ENST00000498041	TNNI3K	Q59H18	835 aa		4.59	□□□□□ -1.67
RIF1-212	ENST00000498041	TDRD10	Q5VZ19	366 aa	Known RBP	4.59	□□□□□ -1.67
RIF1-212	ENST00000498041	SPOCD1	Q6ZMY3	1216 aa		4.59	□□□□□ -1.67
RIF1-212	ENST00000498041	TMC3	Q7Z5M5	1100 aa		4.59	□□□□□ -1.67
RIF1-212	ENST00000498041	PPFIBP1	Q86W92	1011 aa		4.59	□□□□□ -1.67
RIF1-212	ENST00000498041	ZNF655	Q8N720	491 aa	Predicted RBP	4.59	□□□□□ -1.67
RIF1-212	ENST00000498041	DAGLB	Q8NCG7	672 aa		4.59	□□□□□ -1.67
RIF1-212	ENST00000498041	HDAC8	Q9BY41	377 aa		4.59	□□□□□ -1.67
RIF1-212	ENST00000498041	MBNL3	Q9NUK0	354 aa	Known RBP	4.59	□□□□□ -1.67
RIF1-212	ENST00000498041	PRR13	Q9NZ81	148 aa		4.59	□□□□□ -1.67
RIF1-212	ENST00000498041	PRKAG3	Q9UGI9	489 aa		4.59	□□□□□ -1.67
RIF1-212	ENST00000498041	ADAMTS6	Q9UKP5	1117 aa		4.59	□□□□□ -1.67
RIF1-212	ENST00000498041	SMAD7	O15105	426 aa	Known RBP	4.58	□□□□□ -1.68
RIF1-212	ENST00000498041	PRAMEF1	O95521	474 aa		4.58	□□□□□ -1.68
RIF1-212	ENST00000498041	ETFB	P38117	255 aa		4.58	□□□□□ -1.68
RIF1-212	ENST00000498041	SLC7A5	Q01650	507 aa		4.58	□□□□□ -1.68
RIF1-212	ENST00000498041	EGR3	Q06889	387 aa		4.58	□□□□□ -1.68
RIF1-212	ENST00000498041	AXDND1	Q5T1B0	1012 aa	Predicted RBP	4.58	□□□□□ -1.68
RIF1-212	ENST00000498041	DCAF15	Q66K64	600 aa		4.58	□□□□□ -1.68
RIF1-212	ENST00000498041	CCDC120	Q96HB5	630 aa		4.58	□□□□□ -1.68
RIF1-212	ENST00000498041	ALPK1	Q96QP1	1244 aa		4.58	□□□□□ -1.68
RIF1-212	ENST00000498041	PRDM7	Q9NQW5	492 aa		4.58	□□□□□ -1.68
RIF1-212	ENST00000498041	CHST7	Q9NS84	486 aa		4.58	□□□□□ -1.68
RIF1-212	ENST00000498041	FAM86C1	Q9NVL1	165 aa		4.58	□□□□□ -1.68
RIF1-212	ENST00000498041	GFOD1	Q9NXC2	390 aa		4.58	□□□□□ -1.68
RIF1-212	ENST00000498041	PCDHA11	Q9Y5I1	949 aa		4.58	□□□□□ -1.68
RIF1-212	ENST00000498041	LRRC10B	A6NIK2	292 aa		4.57	□□□□□ -1.68
RIF1-212	ENST00000498041	SHOX	O15266	292 aa		4.57	□□□□□ -1.68
RIF1-212	ENST00000498041	CD247	P20963	164 aa		4.57	□□□□□ -1.68
RIF1-212	ENST00000498041	TCEAL1	Q15170	157 aa		4.57	□□□□□ -1.68
RIF1-212	ENST00000498041	MLANA	Q16655	118 aa		4.57	□□□□□ -1.68
RIF1-212	ENST00000498041	NOL9	Q5SY16	702 aa	Known RBP	4.57	□□□□□ -1.68
RIF1-212	ENST00000498041	VHLL	Q6RSH7	139 aa		4.57	□□□□□ -1.68
RIF1-212	ENST00000498041	RNF111	Q6ZNA4	994 aa		4.57	□□□□□ -1.68
RIF1-212	ENST00000498041	USHBP1	Q8N6Y0	703 aa		4.57	□□□□□ -1.68
RIF1-212	ENST00000498041	LRRN4CL	Q8ND94	238 aa		4.57	□□□□□ -1.68
RIF1-212	ENST00000498041	SYTL4	Q96C24	671 aa	Predicted RBP	4.57	□□□□□ -1.68
RIF1-212	ENST00000498041	TCTN2	Q96GX1	697 aa		4.57	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms