RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 PSMD2Q13200 908 aa7.59□□□□□ -1.19
VPS50-219ENST00000495039 SLC14A2Q15849 920 aa7.59□□□□□ -1.19
VPS50-219ENST00000495039 WAPLQ7Z5K2 1190 aa7.59□□□□□ -1.19
VPS50-219ENST00000495039 HDAC8Q9BY41 377 aa7.59□□□□□ -1.19
VPS50-219ENST00000495039 SIRT5Q9NXA8 310 aa7.59□□□□□ -1.19
VPS50-219ENST00000495039 PARP2Q9UGN5 583 aa7.59□□□□□ -1.19
VPS50-219ENST00000495039 NRDCO43847 1150 aa7.58□□□□□ -1.2
VPS50-219ENST00000495039 SASH1O94885 1247 aa7.58□□□□□ -1.2
VPS50-219ENST00000495039 PF4P02776 101 aa7.58□□□□□ -1.2
VPS50-219ENST00000495039 GBP1P32455 592 aa7.58□□□□□ -1.2
VPS50-219ENST00000495039 RNF4P78317 190 aa7.58□□□□□ -1.2
VPS50-219ENST00000495039 OLFML2BQ68BL8 750 aa7.58□□□□□ -1.2
VPS50-219ENST00000495039 MAP6Q96JE9 813 aa7.58□□□□□ -1.2
VPS50-219ENST00000495039 KIF2CQ99661 725 aa7.58□□□□□ -1.2
VPS50-219ENST00000495039 USP31Q70CQ4 1352 aa7.58□□□□□ -1.2
VPS50-219ENST00000495039 F6X3S4 739 aa7.57□□□□□ -1.2
VPS50-219ENST00000495039 GRIN3BO60391 1043 aa7.57□□□□□ -1.2
VPS50-219ENST00000495039 AFF3P51826 1226 aaKnown RBP7.57□□□□□ -1.2
VPS50-219ENST00000495039 DAB2P98082 770 aa7.57□□□□□ -1.2
VPS50-219ENST00000495039 CEP128Q6ZU80 1094 aa7.57□□□□□ -1.2
VPS50-219ENST00000495039 DAGLBQ8NCG7 672 aa7.57□□□□□ -1.2
VPS50-219ENST00000495039 VWCEQ96DN2 955 aa7.57□□□□□ -1.2
VPS50-219ENST00000495039 JAG2Q9Y219 1238 aa7.57□□□□□ -1.2
VPS50-219ENST00000495039 POLR3KQ9Y2Y1 108 aaPredicted RBP7.57□□□□□ -1.2
VPS50-219ENST00000495039 SSU72P8A0A1W2PR75 194 aa7.56□□□□□ -1.2
VPS50-219ENST00000495039 ANKRD33BA6NCL7 494 aa7.56□□□□□ -1.2
VPS50-219ENST00000495039 PATL2C9JE40 543 aaKnown RBP7.56□□□□□ -1.2
VPS50-219ENST00000495039 EFEMP2O95967 443 aa7.56□□□□□ -1.2
VPS50-219ENST00000495039 PCBP3P57721 371 aaKnown RBP7.56□□□□□ -1.2
VPS50-219ENST00000495039 USHBP1Q8N6Y0 703 aa7.56□□□□□ -1.2
VPS50-219ENST00000495039 CXorf38Q8TB03 319 aa7.56□□□□□ -1.2
VPS50-219ENST00000495039 DACT3Q96B18 629 aaPredicted RBP7.56□□□□□ -1.2
VPS50-219ENST00000495039 RHOVQ96L33 236 aa7.56□□□□□ -1.2
VPS50-219ENST00000495039 FOXP3Q9BZS1 431 aa7.56□□□□□ -1.2
VPS50-219ENST00000495039 TCFL5Q9UL49 500 aa7.56□□□□□ -1.2
VPS50-219ENST00000495039 RGS13O14921 159 aa7.55□□□□□ -1.2
VPS50-219ENST00000495039 N4BP3O15049 544 aa7.55□□□□□ -1.2
VPS50-219ENST00000495039 DNAJA2O60884 412 aa7.55□□□□□ -1.2
VPS50-219ENST00000495039 VIPR1P32241 457 aa7.55□□□□□ -1.2
VPS50-219ENST00000495039 EPHB3P54753 998 aa7.55□□□□□ -1.2
VPS50-219ENST00000495039 MLECQ14165 292 aa7.55□□□□□ -1.2
VPS50-219ENST00000495039 MPP2Q14168 576 aa7.55□□□□□ -1.2
VPS50-219ENST00000495039 ZNF655Q8N720 491 aaPredicted RBP7.55□□□□□ -1.2
VPS50-219ENST00000495039 PANK1Q8TE04 598 aa7.55□□□□□ -1.2
VPS50-219ENST00000495039 TCTN2Q96GX1 697 aa7.55□□□□□ -1.2
VPS50-219ENST00000495039 TMEM74Q96NL1 305 aa7.55□□□□□ -1.2
VPS50-219ENST00000495039 XYLT2Q9H1B5 865 aa7.55□□□□□ -1.2
VPS50-219ENST00000495039 TMEM82A0PJX8 343 aa7.54□□□□□ -1.2
VPS50-219ENST00000495039 ABLIM1O14639 778 aa7.54□□□□□ -1.2
VPS50-219ENST00000495039 CTSHP09668 335 aa7.54□□□□□ -1.2
VPS50-219ENST00000495039 PNLIPP16233 465 aa7.54□□□□□ -1.2
VPS50-219ENST00000495039 GBP2P32456 591 aaPredicted RBP7.54□□□□□ -1.2
VPS50-219ENST00000495039 XPCQ01831 940 aaPredicted RBP7.54□□□□□ -1.2
VPS50-219ENST00000495039 PWP1Q13610 501 aa7.54□□□□□ -1.2
VPS50-219ENST00000495039 SNAP47Q5SQN1 464 aa7.54□□□□□ -1.2
VPS50-219ENST00000495039 DBX2Q6ZNG2 339 aa7.54□□□□□ -1.2
VPS50-219ENST00000495039 REC114Q7Z4M0 266 aa7.54□□□□□ -1.2
VPS50-219ENST00000495039 RELL1Q8IUW5 271 aa7.54□□□□□ -1.2
VPS50-219ENST00000495039 LINC00116Q8NCU8 138 aa7.54□□□□□ -1.2
VPS50-219ENST00000495039 CRELD1Q96HD1 420 aa7.54□□□□□ -1.2
VPS50-219ENST00000495039 HHIPL1Q96JK4 782 aa7.54□□□□□ -1.2
VPS50-219ENST00000495039 CNTD2Q9H8S5 307 aa7.54□□□□□ -1.2
VPS50-219ENST00000495039 SLC22A31A6NKX4 558 aa7.53□□□□□ -1.2
VPS50-219ENST00000495039 ERICH6BQ5W0A0 696 aa7.53□□□□□ -1.2
VPS50-219ENST00000495039 TMC4Q7Z404 712 aa7.53□□□□□ -1.2
VPS50-219ENST00000495039 OTOL1A6NHN0 477 aaPredicted RBP7.52□□□□□ -1.21
VPS50-219ENST00000495039 YBX1P67809 324 aaKnown RBP7.52□□□□□ -1.21
VPS50-219ENST00000495039 RSRP1Q9BUV0 290 aa7.52□□□□□ -1.21
VPS50-219ENST00000495039 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.52□□□□□ -1.21
VPS50-219ENST00000495039 IRS4O14654 1257 aaPredicted RBP7.51□□□□□ -1.21
VPS50-219ENST00000495039 FKTNO75072 461 aa7.51□□□□□ -1.21
VPS50-219ENST00000495039 UBOX5O94941 541 aa7.51□□□□□ -1.21
VPS50-219ENST00000495039 SYPP08247 313 aa7.51□□□□□ -1.21
VPS50-219ENST00000495039 RAG1P15918 1043 aa7.51□□□□□ -1.21
VPS50-219ENST00000495039 RTP1P59025 263 aa7.51□□□□□ -1.21
VPS50-219ENST00000495039 ERVFRD-1P60508 538 aa7.51□□□□□ -1.21
VPS50-219ENST00000495039 FAM160A1Q05DH4 1040 aa7.51□□□□□ -1.21
VPS50-219ENST00000495039 NBPF9Q3BBW0 867 aa7.51□□□□□ -1.21
VPS50-219ENST00000495039 BBS9Q3SYG4 887 aa7.51□□□□□ -1.21
VPS50-219ENST00000495039 TMC3Q7Z5M5 1100 aa7.51□□□□□ -1.21
VPS50-219ENST00000495039 SP8Q8IXZ3 490 aa7.51□□□□□ -1.21
VPS50-219ENST00000495039 GOLM1Q8NBJ4 401 aa7.51□□□□□ -1.21
VPS50-219ENST00000495039 MZB1Q8WU39 189 aa7.51□□□□□ -1.21
VPS50-219ENST00000495039 FCRL2Q96LA5 508 aaPredicted RBP7.51□□□□□ -1.21
VPS50-219ENST00000495039 MPOP05164 745 aa7.5□□□□□ -1.21
VPS50-219ENST00000495039 SDHBP21912 280 aa7.5□□□□□ -1.21
VPS50-219ENST00000495039 ARL4AP40617 200 aa7.5□□□□□ -1.21
VPS50-219ENST00000495039 CDR1P51861 262 aa7.5□□□□□ -1.21
VPS50-219ENST00000495039 TMEM62Q0P6H9 643 aa7.5□□□□□ -1.21
VPS50-219ENST00000495039 ARSHQ5FYA8 562 aa7.5□□□□□ -1.21
VPS50-219ENST00000495039 NBPF12Q5TAG4 269 aaPredicted RBP7.5□□□□□ -1.21
VPS50-219ENST00000495039 GALNT18Q6P9A2 607 aa7.5□□□□□ -1.21
VPS50-219ENST00000495039 CNKSR3Q6P9H4 555 aa7.5□□□□□ -1.21
VPS50-219ENST00000495039 PLCD4Q9BRC7 762 aa7.5□□□□□ -1.21
VPS50-219ENST00000495039 EPB41L4AQ9HCS5 686 aaPredicted RBP7.5□□□□□ -1.21
VPS50-219ENST00000495039 TNFRSF10DQ9UBN6 386 aa7.5□□□□□ -1.21
VPS50-219ENST00000495039 TAF6LQ9Y6J9 622 aa7.5□□□□□ -1.21
VPS50-219ENST00000495039 PRAMEF1O95521 474 aa7.49□□□□□ -1.21
VPS50-219ENST00000495039 CELA3BP08861 270 aa7.49□□□□□ -1.21
VPS50-219ENST00000495039 ENDOUP21128 410 aaKnown RBP7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms