RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 SEPT7Q16181 437 aaKnown RBP6.13□□□□□ -1.43
VPS13A-212ENST00000493341 POMZP3Q6PJE2 187 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 C20orf204Q6ZNR8 217 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 C8orf86Q6ZUL3 223 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 BTN2A2Q8WVV5 523 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 HOOK2Q96ED9 719 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 MPHOSPH6Q99547 160 aaKnown RBP6.13□□□□□ -1.43
VPS13A-212ENST00000493341 WHRNQ9P202 907 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 NOB1Q9ULX3 412 aaKnown RBP6.13□□□□□ -1.43
VPS13A-212ENST00000493341 KCNH1O95259 989 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 NPTXRO95502 500 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 POU3F2P20265 443 aaPredicted RBP6.13□□□□□ -1.43
VPS13A-212ENST00000493341 FLT3P36888 993 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 OS9Q13438 667 aaPredicted RBP6.13□□□□□ -1.43
VPS13A-212ENST00000493341 PIN1Q13526 163 aaPredicted RBP6.13□□□□□ -1.43
VPS13A-212ENST00000493341 PRAMEF13Q5VWM6 474 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 MSL1Q68DK7 614 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 SLC4A10Q6U841 1118 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 ZBTB46Q86UZ6 589 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 PASD1Q8IV76 773 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 RNF214Q8ND24 703 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 COG1Q8WTW3 980 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 CYB5D2Q8WUJ1 264 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 BRF1Q92994 677 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 SCLYQ96I15 445 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 TRIM8Q9BZR9 551 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 M0R082 166 aa6.12□□□□□ -1.43
VPS13A-212ENST00000493341 TMPRSS2O15393 492 aa6.12□□□□□ -1.43
VPS13A-212ENST00000493341 DLX3O60479 287 aa6.12□□□□□ -1.43
VPS13A-212ENST00000493341 CD68P34810 354 aaPredicted RBP6.12□□□□□ -1.43
VPS13A-212ENST00000493341 IGFALSP35858 605 aa6.12□□□□□ -1.43
VPS13A-212ENST00000493341 MAP2K3P46734 347 aa6.12□□□□□ -1.43
VPS13A-212ENST00000493341 KCNJ6P48051 423 aa6.12□□□□□ -1.43
VPS13A-212ENST00000493341 EXOSC6Q5RKV6 272 aaKnown RBP6.12□□□□□ -1.43
VPS13A-212ENST00000493341 NOL9Q5SY16 702 aaKnown RBP6.12□□□□□ -1.43
VPS13A-212ENST00000493341 SYCP2LQ5T4T6 812 aa6.12□□□□□ -1.43
VPS13A-212ENST00000493341 TMED8Q6PL24 325 aaPredicted RBP6.12□□□□□ -1.43
VPS13A-212ENST00000493341 SPATS2Q86XZ4 545 aaKnown RBP6.12□□□□□ -1.43
VPS13A-212ENST00000493341 CNTD1Q8N815 330 aa6.12□□□□□ -1.43
VPS13A-212ENST00000493341 GSTCDQ8NEC7 633 aa6.12□□□□□ -1.43
VPS13A-212ENST00000493341 TTC8Q8TAM2 541 aa6.12□□□□□ -1.43
VPS13A-212ENST00000493341 ZNF417Q8TAU3 575 aa6.12□□□□□ -1.43
VPS13A-212ENST00000493341 PI4K2BQ8TCG2 481 aa6.12□□□□□ -1.43
VPS13A-212ENST00000493341 PTPRN2Q92932 1015 aa6.12□□□□□ -1.43
VPS13A-212ENST00000493341 TRIM47Q96LD4 638 aa6.12□□□□□ -1.43
VPS13A-212ENST00000493341 MAGEB10Q96LZ2 347 aaPredicted RBP6.12□□□□□ -1.43
VPS13A-212ENST00000493341 FANCD2OSQ96PS1 177 aa6.12□□□□□ -1.43
VPS13A-212ENST00000493341 ZNF587Q96SQ5 575 aaPredicted RBP6.12□□□□□ -1.43
VPS13A-212ENST00000493341 PCGF6Q9BYE7 350 aa6.12□□□□□ -1.43
VPS13A-212ENST00000493341 IRX2Q9BZI1 471 aaPredicted RBP6.12□□□□□ -1.43
VPS13A-212ENST00000493341 DISC1Q9NRI5 854 aa6.12□□□□□ -1.43
VPS13A-212ENST00000493341 CRIM1Q9NZV1 1036 aa6.12□□□□□ -1.43
VPS13A-212ENST00000493341 TRHDEQ9UKU6 1024 aa6.12□□□□□ -1.43
VPS13A-212ENST00000493341 AP4E1Q9UPM8 1137 aa6.12□□□□□ -1.43
VPS13A-212ENST00000493341 NEMP1O14524 444 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 CAPNS1P04632 268 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 MYL1P05976 194 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 ID4P47928 161 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 HDAC1Q13547 482 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-212ENST00000493341 AUHQ13825 339 aaKnown RBP6.11□□□□□ -1.43
VPS13A-212ENST00000493341 GAS6Q14393 721 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 TTLL4Q14679 1199 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 UBE2R2Q712K3 238 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-212ENST00000493341 TRIM59Q8IWR1 403 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 MRGPRX3Q96LB0 322 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 PUS7LQ9H0K6 701 aaKnown RBP6.11□□□□□ -1.43
VPS13A-212ENST00000493341 CDH19Q9H159 772 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 ARNT2Q9HBZ2 717 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 SSU72Q9NP77 194 aaKnown RBP6.11□□□□□ -1.43
VPS13A-212ENST00000493341 ZNF180Q9UJW8 692 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 EMC9Q9Y3B6 208 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 TM4SF5O14894 197 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 RNGTTO60942 597 aaKnown RBP6.11□□□□□ -1.43
VPS13A-212ENST00000493341 PYGMP11217 842 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 ITGA4P13612 1032 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 SCNN1BP51168 640 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 SLBPQ14493 270 aaKnown RBP eCLIP6.11□□□□□ -1.43
VPS13A-212ENST00000493341 PPP2R5DQ14738 602 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 FOXD4L6Q3SYB3 417 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-212ENST00000493341 ANKRD39Q53RE8 183 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 PIK3R6Q5UE93 754 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 FOXD4L3Q6VB84 417 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-212ENST00000493341 UBE3DQ7Z6J8 389 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 DMRTC2Q8IXT2 367 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-212ENST00000493341 CRACR2BQ8N4Y2 399 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-212ENST00000493341 NANOS1Q8WY41 292 aaKnown RBP6.11□□□□□ -1.43
VPS13A-212ENST00000493341 KCTD13Q8WZ19 329 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 CHMP4CQ96CF2 233 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 WNK4Q96J92 1243 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 IFT22Q9H7X7 185 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 GP6Q9HCN6 339 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 KCNK4Q9NYG8 393 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 TRAF6Q9Y4K3 522 aa6.11□□□□□ -1.43
VPS13A-212ENST00000493341 NRG2O14511 850 aaPredicted RBP6.1□□□□□ -1.43
VPS13A-212ENST00000493341 CREB3O43889 395 aa6.1□□□□□ -1.43
VPS13A-212ENST00000493341 SART3Q15020 963 aaKnown RBP6.1□□□□□ -1.43
VPS13A-212ENST00000493341 BRD3Q15059 726 aa6.1□□□□□ -1.43
VPS13A-212ENST00000493341 SKOR2Q2VWA4 1001 aaPredicted RBP6.1□□□□□ -1.43
VPS13A-212ENST00000493341 NBPF12Q5TAG4 269 aaPredicted RBP6.1□□□□□ -1.43
VPS13A-212ENST00000493341 KSR2Q6VAB6 950 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms