RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 FITM1A5D6W6 292 aa9.34□□□□□ -0.91
CCDC39-202ENST00000471307 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.34□□□□□ -0.91
CCDC39-202ENST00000471307 SIGLEC6O43699 453 aa9.34□□□□□ -0.91
CCDC39-202ENST00000471307 HDLBPQ00341 1268 aaKnown RBP9.34□□□□□ -0.91
CCDC39-202ENST00000471307 CHRNEQ04844 493 aa9.34□□□□□ -0.91
CCDC39-202ENST00000471307 PAK2Q13177 524 aa9.34□□□□□ -0.91
CCDC39-202ENST00000471307 NT5DC4Q86YG4 428 aa9.34□□□□□ -0.91
CCDC39-202ENST00000471307 MKRN2Q9H000 416 aaKnown RBP9.34□□□□□ -0.91
CCDC39-202ENST00000471307 SUCOQ9UBS9 1254 aaKnown RBP9.34□□□□□ -0.91
CCDC39-202ENST00000471307 SOX9P48436 509 aa9.33□□□□□ -0.92
CCDC39-202ENST00000471307 PCBP3P57721 371 aaKnown RBP9.33□□□□□ -0.92
CCDC39-202ENST00000471307 SPPL2CQ8IUH8 684 aa9.33□□□□□ -0.92
CCDC39-202ENST00000471307 LINC00116Q8NCU8 138 aa9.33□□□□□ -0.92
CCDC39-202ENST00000471307 BHLHE22Q8NFJ8 381 aaPredicted RBP9.33□□□□□ -0.92
CCDC39-202ENST00000471307 SMARCC1Q92922 1105 aaPredicted RBP9.33□□□□□ -0.92
CCDC39-202ENST00000471307 TCTN2Q96GX1 697 aa9.33□□□□□ -0.92
CCDC39-202ENST00000471307 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.33□□□□□ -0.92
CCDC39-202ENST00000471307 PCDHB12Q9Y5F1 795 aa9.33□□□□□ -0.92
CCDC39-202ENST00000471307 UNCXA6NJT0 531 aa9.32□□□□□ -0.92
CCDC39-202ENST00000471307 C8AP07357 584 aa9.32□□□□□ -0.92
CCDC39-202ENST00000471307 ACRP10323 421 aa9.32□□□□□ -0.92
CCDC39-202ENST00000471307 MPZL3Q6UWV2 235 aa9.32□□□□□ -0.92
CCDC39-202ENST00000471307 TMC3Q7Z5M5 1100 aa9.32□□□□□ -0.92
CCDC39-202ENST00000471307 USHBP1Q8N6Y0 703 aa9.32□□□□□ -0.92
CCDC39-202ENST00000471307 ANKS4BQ8N8V4 417 aa9.32□□□□□ -0.92
CCDC39-202ENST00000471307 GPRASP2Q96D09 838 aa9.32□□□□□ -0.92
CCDC39-202ENST00000471307 PRDM14Q9GZV8 571 aa9.32□□□□□ -0.92
CCDC39-202ENST00000471307 PPT2Q9UMR5 302 aa9.32□□□□□ -0.92
CCDC39-202ENST00000471307 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.32□□□□□ -0.92
CCDC39-202ENST00000471307 PRAMEF1O95521 474 aa9.31□□□□□ -0.92
CCDC39-202ENST00000471307 ENDOUP21128 410 aaKnown RBP9.31□□□□□ -0.92
CCDC39-202ENST00000471307 GUCY2CP25092 1073 aa9.31□□□□□ -0.92
CCDC39-202ENST00000471307 GJA8P48165 433 aa9.31□□□□□ -0.92
CCDC39-202ENST00000471307 PMS1P54277 932 aaKnown RBP9.31□□□□□ -0.92
CCDC39-202ENST00000471307 AUHQ13825 339 aaKnown RBP9.31□□□□□ -0.92
CCDC39-202ENST00000471307 LIN37Q96GY3 246 aaPredicted RBP9.31□□□□□ -0.92
CCDC39-202ENST00000471307 ZNF512BQ96KM6 892 aaPredicted RBP9.31□□□□□ -0.92
CCDC39-202ENST00000471307 FAM84AQ96KN4 292 aa9.31□□□□□ -0.92
CCDC39-202ENST00000471307 ERVFC1P60507 584 aa9.3□□□□□ -0.92
CCDC39-202ENST00000471307 SNW1Q13573 536 aaKnown RBP9.3□□□□□ -0.92
CCDC39-202ENST00000471307 MLANAQ16655 118 aa9.3□□□□□ -0.92
CCDC39-202ENST00000471307 LCE3BQ5TA77 95 aa9.3□□□□□ -0.92
CCDC39-202ENST00000471307 FBXW10Q5XX13 1052 aa9.3□□□□□ -0.92
CCDC39-202ENST00000471307 LINC01599Q8WXQ3 324 aa9.3□□□□□ -0.92
CCDC39-202ENST00000471307 SLC38A3Q99624 504 aa9.3□□□□□ -0.92
CCDC39-202ENST00000471307 TGIF2Q9GZN2 237 aa9.3□□□□□ -0.92
CCDC39-202ENST00000471307 SP110Q9HB58 689 aa9.3□□□□□ -0.92
CCDC39-202ENST00000471307 CHST7Q9NS84 486 aa9.3□□□□□ -0.92
CCDC39-202ENST00000471307 GINM1Q9NU53 330 aa9.3□□□□□ -0.92
CCDC39-202ENST00000471307 TCFL5Q9UL49 500 aa9.3□□□□□ -0.92
CCDC39-202ENST00000471307 SSU72P8A0A1W2PR75 194 aa9.29□□□□□ -0.92
CCDC39-202ENST00000471307 MESP2Q0VG99 397 aa9.29□□□□□ -0.92
CCDC39-202ENST00000471307 SNX17Q15036 470 aa9.29□□□□□ -0.92
CCDC39-202ENST00000471307 BBS9Q3SYG4 887 aa9.29□□□□□ -0.92
CCDC39-202ENST00000471307 ANKRD39Q53RE8 183 aa9.29□□□□□ -0.92
CCDC39-202ENST00000471307 LSRQ86X29 649 aaPredicted RBP9.29□□□□□ -0.92
CCDC39-202ENST00000471307 KSR1Q8IVT5 923 aa9.29□□□□□ -0.92
CCDC39-202ENST00000471307 OR6P1Q8NGX9 317 aa9.29□□□□□ -0.92
CCDC39-202ENST00000471307 CRBNQ96SW2 442 aa9.29□□□□□ -0.92
CCDC39-202ENST00000471307 CWC22Q9HCG8 908 aaKnown RBP9.29□□□□□ -0.92
CCDC39-202ENST00000471307 SLC12A7Q9Y666 1083 aa9.29□□□□□ -0.92
CCDC39-202ENST00000471307 PKN1Q16512 942 aa9.28□□□□□ -0.92
CCDC39-202ENST00000471307 ZNF648Q5T619 568 aaPredicted RBP9.28□□□□□ -0.92
CCDC39-202ENST00000471307 C7orf61Q8IZ16 206 aa9.28□□□□□ -0.92
CCDC39-202ENST00000471307 FOXP3Q9BZS1 431 aa9.28□□□□□ -0.92
CCDC39-202ENST00000471307 FBXL21Q9UKT6 434 aa9.28□□□□□ -0.92
CCDC39-202ENST00000471307 EFR3BQ9Y2G0 817 aa9.28□□□□□ -0.92
CCDC39-202ENST00000471307 BMP8BP34820 402 aa9.27□□□□□ -0.93
CCDC39-202ENST00000471307 KIR2DL1P43626 348 aaPredicted RBP9.27□□□□□ -0.93
CCDC39-202ENST00000471307 KIR2DL2P43627 348 aaPredicted RBP9.27□□□□□ -0.93
CCDC39-202ENST00000471307 CCDC144CPQ8IYA2 1237 aa9.27□□□□□ -0.93
CCDC39-202ENST00000471307 C19orf47Q8N9M1 422 aaKnown RBP9.27□□□□□ -0.93
CCDC39-202ENST00000471307 PPP1R16BQ96T49 567 aa9.27□□□□□ -0.93
CCDC39-202ENST00000471307 G6PC3Q9BUM1 346 aa9.27□□□□□ -0.93
CCDC39-202ENST00000471307 SYPP08247 313 aa9.26□□□□□ -0.93
CCDC39-202ENST00000471307 RPL10P27635 214 aaKnown RBP9.26□□□□□ -0.93
CCDC39-202ENST00000471307 EIF6P56537 245 aaKnown RBP9.26□□□□□ -0.93
CCDC39-202ENST00000471307 UNC5AQ6ZN44 842 aa9.26□□□□□ -0.93
CCDC39-202ENST00000471307 WAPLQ7Z5K2 1190 aa9.26□□□□□ -0.93
CCDC39-202ENST00000471307 SEC16BQ96JE7 1060 aa9.26□□□□□ -0.93
CCDC39-202ENST00000471307 RNF32Q9H0A6 362 aa9.26□□□□□ -0.93
CCDC39-202ENST00000471307 TMEM82A0PJX8 343 aa9.25□□□□□ -0.93
CCDC39-202ENST00000471307 C9IYK1 514 aa9.25□□□□□ -0.93
CCDC39-202ENST00000471307 GIPRP48546 466 aa9.25□□□□□ -0.93
CCDC39-202ENST00000471307 C9orf131Q5VYM1 1079 aa9.25□□□□□ -0.93
CCDC39-202ENST00000471307 PRR23BQ6ZRT6 265 aa9.25□□□□□ -0.93
CCDC39-202ENST00000471307 FBXO15Q8NCQ5 510 aaPredicted RBP9.25□□□□□ -0.93
CCDC39-202ENST00000471307 MAP6Q96JE9 813 aa9.25□□□□□ -0.93
CCDC39-202ENST00000471307 SRRTQ9BXP5 876 aaKnown RBP9.25□□□□□ -0.93
CCDC39-202ENST00000471307 SLC6A17Q9H1V8 727 aa9.25□□□□□ -0.93
CCDC39-202ENST00000471307 GFOD1Q9NXC2 390 aa9.25□□□□□ -0.93
CCDC39-202ENST00000471307 ZMYM5Q9UJ78 669 aa9.25□□□□□ -0.93
CCDC39-202ENST00000471307 ZNF214Q9UL59 606 aaPredicted RBP9.25□□□□□ -0.93
CCDC39-202ENST00000471307 SHOXO15266 292 aa9.24□□□□□ -0.93
CCDC39-202ENST00000471307 GSNP06396 782 aa9.24□□□□□ -0.93
CCDC39-202ENST00000471307 CCDC81Q6ZN84 652 aa9.24□□□□□ -0.93
CCDC39-202ENST00000471307 IRF2BP1Q8IU81 584 aa9.24□□□□□ -0.93
CCDC39-202ENST00000471307 KRTAP1-3Q8IUG1 177 aa9.24□□□□□ -0.93
CCDC39-202ENST00000471307 FCRL2Q96LA5 508 aaPredicted RBP9.24□□□□□ -0.93
CCDC39-202ENST00000471307 EPB41L4BQ9H329 900 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms